Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_E21
(609 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q02978|M2OM_HUMAN Mitochondrial 2-oxoglutarate/malate ca... 286 2e-77
sp|Q9CR62|M2OM_MOUSE Mitochondrial 2-oxoglutarate/malate ca... 285 8e-77
sp|P22292|M2OM_BOVIN Mitochondrial 2-oxoglutarate/malate ca... 282 4e-76
sp|P97700|M2OM_RAT Mitochondrial 2-oxoglutarate/malate carr... 276 2e-74
sp|Q9UBX3|DIC_HUMAN Mitochondrial dicarboxylate carrier 146 5e-35
sp|Q9QZD8|DIC_MOUSE Mitochondrial dicarboxylate carrier 142 5e-34
sp|P14271|UCP1_RABIT Mitochondrial brown fat uncoupling pro... 125 1e-28
sp|P12242|UCP1_MOUSE Mitochondrial brown fat uncoupling pro... 122 9e-28
sp|P04633|UCP1_RAT Mitochondrial brown fat uncoupling prote... 121 1e-27
sp|Q9ER18|UCP1_PHOSU Mitochondrial brown fat uncoupling pro... 120 3e-27
>sp|Q02978|M2OM_HUMAN Mitochondrial 2-oxoglutarate/malate carrier protein (OGCP) (Solute
carrier family 25 member 11)
Length = 314
Score = 286 bits (733), Expect = 2e-77
Identities = 143/203 (70%), Positives = 164/203 (80%), Gaps = 1/203 (0%)
Frame = +2
Query: 2 LFVQPLDLVKNRMQMSGQDGAKKAYKSSFDAIRQITKNEGLLAIYSGLSAGLLRQATYTT 181
+FVQPLDLVKNRMQ+SG+ + YK+SF A+ I K EGL IY+GLSAGLLRQATYTT
Sbjct: 37 VFVQPLDLVKNRMQLSGEGAKTREYKTSFHALTSILKAEGLRGIYTGLSAGLLRQATYTT 96
Query: 182 TRLGVYTCLFEKFSTKD-KPPSFATKAAIGLTAGLVGSFIGTPTEVALIRMTSDGRLPMD 358
TRLG+YT LFE+ + D PP F KA IG+TAG G+F+GTP EVALIRMT+DGRLP D
Sbjct: 97 TRLGIYTVLFERLTGADGTPPGFLLKAVIGMTAGATGAFVGTPAEVALIRMTADGRLPAD 156
Query: 359 QRRNYRNVFHALARIVREEGVLTLWRGCLPTMGRAAVVNLAQLASYSQAKQVILESGYFS 538
QRR Y+NVF+AL RI REEGVLTLWRGC+PTM RA VVN AQLASYSQ+KQ +L+SGYFS
Sbjct: 157 QRRGYKNVFNALIRITREEGVLTLWRGCIPTMARAVVVNAAQLASYSQSKQFLLDSGYFS 216
Query: 539 DGIFVHFGASMISGFITTVASMP 607
D I HF ASMISG +TT ASMP
Sbjct: 217 DNILCHFCASMISGLVTTAASMP 239
Score = 53.5 bits (127), Expect = 4e-07
Identities = 44/181 (24%), Positives = 82/181 (45%), Gaps = 9/181 (4%)
Frame = +2
Query: 14 PLDLVKNRMQMSGQDGA--KKAYKSSFDAIRQITKNEGLLAIYSGLSAGLLRQATYTTTR 187
P ++ RM G+ A ++ YK+ F+A+ +IT+ EG+L ++ G + R +
Sbjct: 139 PAEVALIRMTADGRLPADQRRGYKNVFNALIRITREEGVLTLWRGCIPTMARAVVVNAAQ 198
Query: 188 LGVYT----CLFEKFSTKDKPPSFATKAAIGLTAGLVGSFIGTPTEVALIRMTSDGRLPM 355
L Y+ L + D + + +GLV + P ++A R+ + +
Sbjct: 199 LASYSQSKQFLLDSGYFSD---NILCHFCASMISGLVTTAASMPVDIAKTRIQNMRMI-- 253
Query: 356 DQRRNYRNVFHALARIVREEGVLTLWRGCLP---TMGRAAVVNLAQLASYSQAKQVILES 526
D + Y+N L ++VR EG +LW+G P +G V+ L ++A + + S
Sbjct: 254 DGKPEYKNGLDVLFKVVRYEGFFSLWKGFTPYYARLGPHTVLTFIFLEQMNKAYKRLFLS 313
Query: 527 G 529
G
Sbjct: 314 G 314
>sp|Q9CR62|M2OM_MOUSE Mitochondrial 2-oxoglutarate/malate carrier protein (OGCP) (Solute
carrier family 25 member 11)
Length = 314
Score = 285 bits (728), Expect = 8e-77
Identities = 142/203 (69%), Positives = 163/203 (80%), Gaps = 1/203 (0%)
Frame = +2
Query: 2 LFVQPLDLVKNRMQMSGQDGAKKAYKSSFDAIRQITKNEGLLAIYSGLSAGLLRQATYTT 181
+FVQPLDLVKNRMQ+SG+ + YK+SF A+ I K EGL IY+GLSAGLLRQATYTT
Sbjct: 37 VFVQPLDLVKNRMQLSGEGAKTREYKTSFHALTSILKTEGLKGIYTGLSAGLLRQATYTT 96
Query: 182 TRLGVYTCLFEKFSTKD-KPPSFATKAAIGLTAGLVGSFIGTPTEVALIRMTSDGRLPMD 358
TRLG+YT LFE+ + D PP F KA IG+TAG G+F+GTP EVALIRMT+DGRLP D
Sbjct: 97 TRLGIYTVLFERLTGADGTPPGFLLKALIGMTAGATGAFVGTPAEVALIRMTADGRLPAD 156
Query: 359 QRRNYRNVFHALARIVREEGVLTLWRGCLPTMGRAAVVNLAQLASYSQAKQVILESGYFS 538
QRR Y+NVF+AL RI REEGV TLWRGC+PTM RA VVN AQLASYSQ+KQ +L+SGYFS
Sbjct: 157 QRRGYKNVFNALVRIAREEGVPTLWRGCIPTMARAVVVNAAQLASYSQSKQFLLDSGYFS 216
Query: 539 DGIFVHFGASMISGFITTVASMP 607
D I HF ASMISG +TT ASMP
Sbjct: 217 DNILCHFCASMISGLVTTAASMP 239
Score = 47.8 bits (112), Expect = 2e-05
Identities = 41/181 (22%), Positives = 79/181 (43%), Gaps = 9/181 (4%)
Frame = +2
Query: 14 PLDLVKNRMQMSGQDGA--KKAYKSSFDAIRQITKNEGLLAIYSGLSAGLLRQATYTTTR 187
P ++ RM G+ A ++ YK+ F+A+ +I + EG+ ++ G + R +
Sbjct: 139 PAEVALIRMTADGRLPADQRRGYKNVFNALVRIAREEGVPTLWRGCIPTMARAVVVNAAQ 198
Query: 188 LGVYT----CLFEKFSTKDKPPSFATKAAIGLTAGLVGSFIGTPTEVALIRMTSDGRLPM 355
L Y+ L + D + + +GLV + P ++ R+ + +
Sbjct: 199 LASYSQSKQFLLDSGYFSD---NILCHFCASMISGLVTTAASMPVDIVKTRIQNMRMI-- 253
Query: 356 DQRRNYRNVFHALARIVREEGVLTLWRGCLP---TMGRAAVVNLAQLASYSQAKQVILES 526
D + Y+N L ++VR EG +LW+G P +G V+ L ++A + + S
Sbjct: 254 DGKPEYKNGLDVLLKVVRYEGFFSLWKGFTPYYARLGPHTVLTFIFLEQMNKAYKRLFLS 313
Query: 527 G 529
G
Sbjct: 314 G 314
>sp|P22292|M2OM_BOVIN Mitochondrial 2-oxoglutarate/malate carrier protein (OGCP)
Length = 314
Score = 282 bits (722), Expect = 4e-76
Identities = 141/203 (69%), Positives = 165/203 (81%), Gaps = 1/203 (0%)
Frame = +2
Query: 2 LFVQPLDLVKNRMQMSGQDGAKKAYKSSFDAIRQITKNEGLLAIYSGLSAGLLRQATYTT 181
+FVQPLDLVKNRMQ+SG+ + YK+SF A+ I + EGL IY+GLSAGLLRQATYTT
Sbjct: 37 VFVQPLDLVKNRMQLSGEGAKTREYKTSFHALISILRAEGLRGIYTGLSAGLLRQATYTT 96
Query: 182 TRLGVYTCLFEKFSTKD-KPPSFATKAAIGLTAGLVGSFIGTPTEVALIRMTSDGRLPMD 358
TRLG+YT LFE+ + D PP F KA IG+TAG G+F+GTP EVALIRMT+DGRLP+D
Sbjct: 97 TRLGIYTVLFERLTGADGTPPGFLLKAVIGMTAGATGAFVGTPAEVALIRMTADGRLPVD 156
Query: 359 QRRNYRNVFHALARIVREEGVLTLWRGCLPTMGRAAVVNLAQLASYSQAKQVILESGYFS 538
QRR Y+NVF+AL RIV+EEGV TLWRGC+PTM RA VVN AQLASYSQ+KQ +L+SGYFS
Sbjct: 157 QRRGYKNVFNALFRIVQEEGVPTLWRGCIPTMARAVVVNAAQLASYSQSKQFLLDSGYFS 216
Query: 539 DGIFVHFGASMISGFITTVASMP 607
D I HF ASMISG +TT ASMP
Sbjct: 217 DNILCHFCASMISGLVTTAASMP 239
Score = 46.6 bits (109), Expect = 5e-05
Identities = 40/181 (22%), Positives = 78/181 (43%), Gaps = 9/181 (4%)
Frame = +2
Query: 14 PLDLVKNRMQMSGQ--DGAKKAYKSSFDAIRQITKNEGLLAIYSGLSAGLLRQATYTTTR 187
P ++ RM G+ ++ YK+ F+A+ +I + EG+ ++ G + R +
Sbjct: 139 PAEVALIRMTADGRLPVDQRRGYKNVFNALFRIVQEEGVPTLWRGCIPTMARAVVVNAAQ 198
Query: 188 LGVYT----CLFEKFSTKDKPPSFATKAAIGLTAGLVGSFIGTPTEVALIRMTSDGRLPM 355
L Y+ L + D + + +GLV + P ++ R+ + +
Sbjct: 199 LASYSQSKQFLLDSGYFSD---NILCHFCASMISGLVTTAASMPVDIVKTRIQNMRMI-- 253
Query: 356 DQRRNYRNVFHALARIVREEGVLTLWRGCLP---TMGRAAVVNLAQLASYSQAKQVILES 526
D + Y+N L ++VR EG +LW+G P +G V+ L ++A + + S
Sbjct: 254 DGKPEYKNGLDVLVKVVRYEGFFSLWKGFTPYYARLGPHTVLTFIFLEQMNKAYKRLFLS 313
Query: 527 G 529
G
Sbjct: 314 G 314
>sp|P97700|M2OM_RAT Mitochondrial 2-oxoglutarate/malate carrier protein (OGCP) (Solute
carrier family 25 member 11)
Length = 314
Score = 276 bits (707), Expect = 2e-74
Identities = 139/203 (68%), Positives = 160/203 (78%), Gaps = 1/203 (0%)
Frame = +2
Query: 2 LFVQPLDLVKNRMQMSGQDGAKKAYKSSFDAIRQITKNEGLLAIYSGLSAGLLRQATYTT 181
+FVQPLDLV NRMQ+SG+ + YK+SF A+ I K EGL IY+GLSAGLLRQATYTT
Sbjct: 37 VFVQPLDLVXNRMQLSGEGAKTREYKTSFHALTSILKAEGLRGIYTGLSAGLLRQATYTT 96
Query: 182 TRLGVYTCLFEKFSTKD-KPPSFATKAAIGLTAGLVGSFIGTPTEVALIRMTSDGRLPMD 358
TRLG+YT LFE+ + D PP F KA IG+TAG G+F+G P EVALIRMT+DGRLP D
Sbjct: 97 TRLGIYTVLFERLTGADGTPPGFLLKALIGMTAGATGAFVGPPAEVALIRMTADGRLPAD 156
Query: 359 QRRNYRNVFHALARIVREEGVLTLWRGCLPTMGRAAVVNLAQLASYSQAKQVILESGYFS 538
QRR Y+NVF+AL RI REEGV TLWRGC+PTM RA VVN AQLASYSQ+KQ +L+SGYFS
Sbjct: 157 QRRGYKNVFNALIRIAREEGVPTLWRGCIPTMARAVVVNAAQLASYSQSKQFLLDSGYFS 216
Query: 539 DGIFVHFGASMISGFITTVASMP 607
D I HF A MISG +TT ASMP
Sbjct: 217 DNILCHFCAIMISGLVTTAASMP 239
Score = 47.8 bits (112), Expect = 2e-05
Identities = 41/181 (22%), Positives = 80/181 (44%), Gaps = 9/181 (4%)
Frame = +2
Query: 14 PLDLVKNRMQMSGQDGA--KKAYKSSFDAIRQITKNEGLLAIYSGLSAGLLRQATYTTTR 187
P ++ RM G+ A ++ YK+ F+A+ +I + EG+ ++ G + R +
Sbjct: 139 PAEVALIRMTADGRLPADQRRGYKNVFNALIRIAREEGVPTLWRGCIPTMARAVVVNAAQ 198
Query: 188 LGVYT----CLFEKFSTKDKPPSFATKAAIGLTAGLVGSFIGTPTEVALIRMTSDGRLPM 355
L Y+ L + D + + +GLV + P ++ R+ + +
Sbjct: 199 LASYSQSKQFLLDSGYFSD---NILCHFCAIMISGLVTTAASMPVDIVKTRIQNMRMI-- 253
Query: 356 DQRRNYRNVFHALARIVREEGVLTLWRGCLP---TMGRAAVVNLAQLASYSQAKQVILES 526
D++ Y+N L ++VR EG +LW+G P +G V+ L ++A + + S
Sbjct: 254 DEKPEYKNGLDVLLKVVRYEGFFSLWKGFTPYYARLGPHTVLTFIFLEQMNKAYKRLFLS 313
Query: 527 G 529
G
Sbjct: 314 G 314
>sp|Q9UBX3|DIC_HUMAN Mitochondrial dicarboxylate carrier
Length = 287
Score = 146 bits (368), Expect = 5e-35
Identities = 79/199 (39%), Positives = 116/199 (58%), Gaps = 1/199 (0%)
Frame = +2
Query: 14 PLDLVKNRMQMSGQDGAKKAYKSSFDAIRQITKNEGLLAIYSGLSAGLLRQATYTTTRLG 193
PLDL+K +Q + + + A+R + + +G+LA+YSGLSA L RQ TY+ TR
Sbjct: 26 PLDLLKVHLQTQQE----VKLRMTGMALR-VVRTDGILALYSGLSASLCRQMTYSLTRFA 80
Query: 194 VYTCLFEKFSTKDKPP-SFATKAAIGLTAGLVGSFIGTPTEVALIRMTSDGRLPMDQRRN 370
+Y + ++ + + P F K +G +GL G F+GTP ++ +RM +D +LP QRRN
Sbjct: 81 IYETVRDRVAKGSQGPLPFHEKVLLGSVSGLAGGFVGTPADLVNVRMQNDVKLPQGQRRN 140
Query: 371 YRNVFHALARIVREEGVLTLWRGCLPTMGRAAVVNLAQLASYSQAKQVILESGYFSDGIF 550
Y + L R+ REEG+ L+ G R A+V + QL+ Y QAKQ++L +GY SD IF
Sbjct: 141 YAHALDGLYRVAREEGLRRLFSGATMASSRGALVTVGQLSCYDQAKQLVLSTGYLSDNIF 200
Query: 551 VHFGASMISGFITTVASMP 607
HF AS I+G T P
Sbjct: 201 THFVASFIAGGCATFLCQP 219
>sp|Q9QZD8|DIC_MOUSE Mitochondrial dicarboxylate carrier
Length = 287
Score = 142 bits (359), Expect = 5e-34
Identities = 78/200 (39%), Positives = 113/200 (56%), Gaps = 2/200 (1%)
Frame = +2
Query: 14 PLDLVKNRMQMSGQDGAKKAYKSSFDAIRQITKNEGLLAIYSGLSAGLLRQATYTTTRLG 193
PLDL+K +Q + + + Q+ + +G LA+Y+GLSA L RQ TY+ TR
Sbjct: 25 PLDLLKVHLQTQQEVKLRMTGMAL-----QVVRTDGFLALYNGLSASLCRQMTYSLTRFA 79
Query: 194 VYTCLFEKFSTKDK--PPSFATKAAIGLTAGLVGSFIGTPTEVALIRMTSDGRLPMDQRR 367
+Y + + + TKD P F K +G +GL G F+GTP ++ +RM +D +LP QRR
Sbjct: 80 IYETMRD-YMTKDSQGPLPFYNKVLLGGISGLTGGFVGTPADLVNVRMQNDMKLPPSQRR 138
Query: 368 NYRNVFHALARIVREEGVLTLWRGCLPTMGRAAVVNLAQLASYSQAKQVILESGYFSDGI 547
NY + L R+ REE + L+ G R A+V + QL+ Y QAKQ++L +GY SD I
Sbjct: 139 NYSHALDGLYRVAREESLRKLFSGATMASSRGALVTVGQLSCYDQAKQLVLSTGYLSDNI 198
Query: 548 FVHFGASMISGFITTVASMP 607
F HF +S I+G T P
Sbjct: 199 FTHFVSSFIAGGCATFLCQP 218
>sp|P14271|UCP1_RABIT Mitochondrial brown fat uncoupling protein 1 (UCP 1) (Thermogenin)
Length = 306
Score = 125 bits (313), Expect = 1e-28
Identities = 68/200 (34%), Positives = 108/200 (54%), Gaps = 2/200 (1%)
Frame = +2
Query: 14 PLDLVKNRMQMSGQDGAKKA--YKSSFDAIRQITKNEGLLAIYSGLSAGLLRQATYTTTR 187
PLD K R Q+ G+ YK I + K EG L +YSGL AGL RQ ++ + R
Sbjct: 33 PLDTAKVRQQIQGEFPITSGIRYKGVLGTITTLAKTEGPLKLYSGLPAGLQRQISFASLR 92
Query: 188 LGVYTCLFEKFSTKDKPPSFATKAAIGLTAGLVGSFIGTPTEVALIRMTSDGRLPMDQRR 367
+G+Y + E F++ ++ PS +K + GLT G V FIG PTEV +R+ + L +
Sbjct: 93 IGLYDTVQEFFTSGEETPSLGSKISAGLTTGGVAVFIGQPTEVVKVRLQAQSHL-HGLKP 151
Query: 368 NYRNVFHALARIVREEGVLTLWRGCLPTMGRAAVVNLAQLASYSQAKQVILESGYFSDGI 547
Y ++A I E + +LW+G P + R ++N +L +Y K ++ + +D +
Sbjct: 152 RYTGTYNAYRIIATTESLTSLWKGTTPNLLRNVIINCTELVTYDLMKGALVRNEILADDV 211
Query: 548 FVHFGASMISGFITTVASMP 607
HF +++I+GF TT+ S P
Sbjct: 212 PCHFVSALIAGFCTTLLSSP 231
>sp|P12242|UCP1_MOUSE Mitochondrial brown fat uncoupling protein 1 (UCP 1) (Thermogenin)
Length = 307
Score = 122 bits (305), Expect = 9e-28
Identities = 68/201 (33%), Positives = 108/201 (53%), Gaps = 3/201 (1%)
Frame = +2
Query: 14 PLDLVKNRMQMSGQDGAKKA--YKSSFDAIRQITKNEGLLAIYSGLSAGLLRQATYTTTR 187
PLD K R+Q+ G+ A YK I + K EGL +YSGL AG+ RQ ++ + R
Sbjct: 33 PLDTAKVRLQIQGEGQASSTIRYKGVLGTITTLAKTEGLPKLYSGLPAGIQRQISFASLR 92
Query: 188 LGVYTCLFEKFST-KDKPPSFATKAAIGLTAGLVGSFIGTPTEVALIRMTSDGRLPMDQR 364
+G+Y + E FS+ ++ P S K + GL G V FIG PTEV +RM + L +
Sbjct: 93 IGLYDSVQEYFSSGRETPASLGNKISAGLMTGGVAVFIGQPTEVVKVRMQAQSHLHGIKP 152
Query: 365 RNYRNVFHALARIVREEGVLTLWRGCLPTMGRAAVVNLAQLASYSQAKQVILESGYFSDG 544
R Y ++A I E + TLW+G P + R ++N +L +Y K ++ + +D
Sbjct: 153 R-YTGTYNAYRVIATTESLSTLWKGTTPNLMRNVIINCTELVTYDLMKGALVNNKILADD 211
Query: 545 IFVHFGASMISGFITTVASMP 607
+ H +++++GF TT+ + P
Sbjct: 212 VPCHLLSALVAGFCTTLLASP 232
>sp|P04633|UCP1_RAT Mitochondrial brown fat uncoupling protein 1 (UCP 1) (Thermogenin)
Length = 307
Score = 121 bits (304), Expect = 1e-27
Identities = 68/201 (33%), Positives = 108/201 (53%), Gaps = 3/201 (1%)
Frame = +2
Query: 14 PLDLVKNRMQMSGQDGAKKA--YKSSFDAIRQITKNEGLLAIYSGLSAGLLRQATYTTTR 187
PLD K R+Q+ G+ A YK I + K EGL +YSGL AG+ RQ ++ + R
Sbjct: 33 PLDTAKVRLQIQGEGQASSTIRYKGVLGTITTLAKTEGLPKLYSGLPAGIQRQISFASLR 92
Query: 188 LGVYTCLFEKFST-KDKPPSFATKAAIGLTAGLVGSFIGTPTEVALIRMTSDGRLPMDQR 364
+G+Y + E FS+ ++ P S +K + GL G V FIG PTEV +RM + L +
Sbjct: 93 IGLYDTVQEYFSSGRETPASLGSKISAGLMTGGVAVFIGQPTEVVKVRMQAQSHLHGIKP 152
Query: 365 RNYRNVFHALARIVREEGVLTLWRGCLPTMGRAAVVNLAQLASYSQAKQVILESGYFSDG 544
R Y ++A I E + TLW+G P + R ++N +L +Y K ++ +D
Sbjct: 153 R-YTGTYNAYRVIATTESLSTLWKGTTPNLMRNVIINCTELVTYDLMKGALVNHHILADD 211
Query: 545 IFVHFGASMISGFITTVASMP 607
+ H +++++GF TT+ + P
Sbjct: 212 VPCHLLSALVAGFCTTLLASP 232
>sp|Q9ER18|UCP1_PHOSU Mitochondrial brown fat uncoupling protein 1 (UCP 1) (Thermogenin)
Length = 307
Score = 120 bits (301), Expect = 3e-27
Identities = 67/201 (33%), Positives = 108/201 (53%), Gaps = 3/201 (1%)
Frame = +2
Query: 14 PLDLVKNRMQMSG--QDGAKKAYKSSFDAIRQITKNEGLLAIYSGLSAGLLRQATYTTTR 187
PLD K R+Q+ G Q + YK I + K EGL +YSGL AG+ RQ ++ + R
Sbjct: 33 PLDTAKVRLQIQGEGQTSSTIRYKGVLGTITTLAKTEGLPKLYSGLPAGIQRQISFASLR 92
Query: 188 LGVYTCLFEKFST-KDKPPSFATKAAIGLTAGLVGSFIGTPTEVALIRMTSDGRLPMDQR 364
+G+Y + E FS+ K+ PP+ + + GL G V FIG PTEV +R+ + L +
Sbjct: 93 IGLYDTVQEYFSSGKETPPTLVNRISAGLMTGGVAVFIGQPTEVVKVRLQAQSHLHGIKP 152
Query: 365 RNYRNVFHALARIVREEGVLTLWRGCLPTMGRAAVVNLAQLASYSQAKQVILESGYFSDG 544
R Y ++A I E + TLW+G P + R ++N +L +Y K ++ + +D
Sbjct: 153 R-YTGTYNAYRIIATTESLSTLWKGTTPNLLRNVIINCTELVTYDLMKGALVNNQILADD 211
Query: 545 IFVHFGASMISGFITTVASMP 607
+ H +++++GF TT + P
Sbjct: 212 VPCHLLSALVAGFCTTFLASP 232
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,982,429
Number of Sequences: 369166
Number of extensions: 1517354
Number of successful extensions: 4476
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4272
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4748907085
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)