Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_E14
(517 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8BHD0|RB39A_MOUSE Ras-related protein Rab-39A (Rab-39) 183 2e-46
sp|Q8BHC1|RB39B_MOUSE Ras-related protein Rab-39B 181 1e-45
sp|Q96DA2|RB39B_HUMAN Ras-related protein Rab-39B 181 1e-45
sp|Q14964|RB39A_HUMAN Ras-related protein Rab-39A (Rab-39) 180 2e-45
sp|P36409|RAB2_DICDI Ras-related protein Rab2 150 2e-36
sp|Q91V41|RAB14_MOUSE Ras-related protein Rab-14 149 3e-36
sp|P61107|RAB14_RAT Ras-related protein Rab-14 >gi|46577643... 149 3e-36
sp|P53994|RAB2A_MOUSE Ras-related protein Rab-2A 147 2e-35
sp|P61019|RAB2A_HUMAN Ras-related protein Rab-2A >gi|465776... 147 2e-35
sp|Q01971|RAB2A_RABIT Ras-related protein Rab-2A 147 2e-35
>sp|Q8BHD0|RB39A_MOUSE Ras-related protein Rab-39A (Rab-39)
Length = 217
Score = 183 bits (464), Expect = 2e-46
Identities = 96/167 (57%), Positives = 120/167 (71%), Gaps = 4/167 (2%)
Frame = +1
Query: 22 YQFRIILIGDSMVGKSSLVRCFSEGKF----SEVCDPTVGVDFFSRIIELPDKIRIKLQL 189
YQFR+I+IGDS VGKS L+ F++G+F S CDPTVGVDFFSR++E+ RIKLQL
Sbjct: 7 YQFRLIVIGDSTVGKSCLLHRFTQGRFPGLHSPACDPTVGVDFFSRLLEIEPGKRIKLQL 66
Query: 190 WDTAGQEKFRSITKSYYRNSVAAVLVFDITKRNSFDHLLEWYQEAKLCMKCNCPTFVVVG 369
WDTAGQE+FRSIT+SYYRNSV LVFDIT R SF+H+ +W +EAK+ ++ F++VG
Sbjct: 67 WDTAGQERFRSITRSYYRNSVGGFLVFDITNRRSFEHVKDWLEEAKMHVQPFQIVFLLVG 126
Query: 370 HKADMESERQVSTREARHFATDTIGDCIYIETSAVTGQNVENVFSNL 510
HK D+ S+RQVS EA +TD YIETSA NVE F+ L
Sbjct: 127 HKCDLASQRQVSREEAERLSTDC--GMKYIETSAKDATNVEESFTIL 171
>sp|Q8BHC1|RB39B_MOUSE Ras-related protein Rab-39B
Length = 213
Score = 181 bits (458), Expect = 1e-45
Identities = 91/163 (55%), Positives = 121/163 (74%)
Frame = +1
Query: 22 YQFRIILIGDSMVGKSSLVRCFSEGKFSEVCDPTVGVDFFSRIIELPDKIRIKLQLWDTA 201
YQFR+I+IGDS VGKS L+R F+EG+F++V DPTVGVDFFSR++E+ RIKLQ+WDTA
Sbjct: 7 YQFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEPGKRIKLQIWDTA 66
Query: 202 GQEKFRSITKSYYRNSVAAVLVFDITKRNSFDHLLEWYQEAKLCMKCNCPTFVVVGHKAD 381
GQE+FRSIT++YYRNSV +L+FDIT R SF ++ EW +E K+ ++ FV+VGHK D
Sbjct: 67 GQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEWLEETKVHVQPYQIVFVLVGHKCD 126
Query: 382 MESERQVSTREARHFATDTIGDCIYIETSAVTGQNVENVFSNL 510
++++RQV+ EA A YIETSA NVE F++L
Sbjct: 127 LDTQRQVTRHEAEKLA--AAYGMKYIETSARDAINVEKAFTDL 167
>sp|Q96DA2|RB39B_HUMAN Ras-related protein Rab-39B
Length = 213
Score = 181 bits (458), Expect = 1e-45
Identities = 91/163 (55%), Positives = 121/163 (74%)
Frame = +1
Query: 22 YQFRIILIGDSMVGKSSLVRCFSEGKFSEVCDPTVGVDFFSRIIELPDKIRIKLQLWDTA 201
YQFR+I+IGDS VGKS L+R F+EG+F++V DPTVGVDFFSR++E+ RIKLQ+WDTA
Sbjct: 7 YQFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEPGKRIKLQIWDTA 66
Query: 202 GQEKFRSITKSYYRNSVAAVLVFDITKRNSFDHLLEWYQEAKLCMKCNCPTFVVVGHKAD 381
GQE+FRSIT++YYRNSV +L+FDIT R SF ++ EW +E K+ ++ FV+VGHK D
Sbjct: 67 GQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEWLEETKVHVQPYQIVFVLVGHKCD 126
Query: 382 MESERQVSTREARHFATDTIGDCIYIETSAVTGQNVENVFSNL 510
++++RQV+ EA A YIETSA NVE F++L
Sbjct: 127 LDTQRQVTRHEAEKLA--AAYGMKYIETSARDAINVEKAFTDL 167
>sp|Q14964|RB39A_HUMAN Ras-related protein Rab-39A (Rab-39)
Length = 217
Score = 180 bits (456), Expect = 2e-45
Identities = 94/167 (56%), Positives = 119/167 (71%), Gaps = 4/167 (2%)
Frame = +1
Query: 22 YQFRIILIGDSMVGKSSLVRCFSEGKF----SEVCDPTVGVDFFSRIIELPDKIRIKLQL 189
YQFR+I+IGDS VGKS L+ F++G+F S CDPTVGVDFFSR++E+ RIKLQL
Sbjct: 7 YQFRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEPGKRIKLQL 66
Query: 190 WDTAGQEKFRSITKSYYRNSVAAVLVFDITKRNSFDHLLEWYQEAKLCMKCNCPTFVVVG 369
WDTAGQE+FRSIT+SYYRNSV LVFDIT R SF+H+ +W +EAK+ ++ F++VG
Sbjct: 67 WDTAGQERFRSITRSYYRNSVGGFLVFDITNRRSFEHVKDWLEEAKMYVQPFRIVFLLVG 126
Query: 370 HKADMESERQVSTREARHFATDTIGDCIYIETSAVTGQNVENVFSNL 510
HK D+ S+RQV+ EA + D YIETSA NVE F+ L
Sbjct: 127 HKCDLASQRQVTREEAEKLSADC--GMKYIETSAKDATNVEESFTIL 171
>sp|P36409|RAB2_DICDI Ras-related protein Rab2
Length = 199
Score = 150 bits (379), Expect = 2e-36
Identities = 80/160 (50%), Positives = 113/160 (70%)
Frame = +1
Query: 37 ILIGDSMVGKSSLVRCFSEGKFSEVCDPTVGVDFFSRIIELPDKIRIKLQLWDTAGQEKF 216
I+IGD+ VGKS L+ F++ +F V D T+GV+F +R+I + +K IKLQ+WDTAGQE F
Sbjct: 1 IIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKA-IKLQIWDTAGQESF 59
Query: 217 RSITKSYYRNSVAAVLVFDITKRNSFDHLLEWYQEAKLCMKCNCPTFVVVGHKADMESER 396
RSIT+SYYR S A+LV+DIT+R++F+HL W ++A+ N T +++G+K+DMES+R
Sbjct: 60 RSITRSYYRGSAGALLVYDITRRDTFNHLTCWLKDARSYANSNM-TIILIGNKSDMESKR 118
Query: 397 QVSTREARHFATDTIGDCIYIETSAVTGQNVENVFSNLAN 516
VS E R FA + I++ETSA T NVE F N A+
Sbjct: 119 AVSYEEGRQFADE--NGLIFLETSAKTASNVEEAFVNTAS 156
>sp|Q91V41|RAB14_MOUSE Ras-related protein Rab-14
Length = 215
Score = 149 bits (377), Expect = 3e-36
Identities = 74/166 (44%), Positives = 116/166 (69%)
Frame = +1
Query: 16 FHYQFRIILIGDSMVGKSSLVRCFSEGKFSEVCDPTVGVDFFSRIIELPDKIRIKLQLWD 195
+ Y F+ I+IGD VGKS L+ F+E KF C T+GV+F +RIIE+ + +IKLQ+WD
Sbjct: 8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQ-KIKLQIWD 66
Query: 196 TAGQEKFRSITKSYYRNSVAAVLVFDITKRNSFDHLLEWYQEAKLCMKCNCPTFVVVGHK 375
TAGQE+FR++T+SYYR + A++V+DIT+R++++HL W +A+ N +++G+K
Sbjct: 67 TAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN-TVIILIGNK 125
Query: 376 ADMESERQVSTREARHFATDTIGDCIYIETSAVTGQNVENVFSNLA 513
AD+E++R V+ EA+ FA + +++E SA TG+NVE+ F A
Sbjct: 126 ADLEAQRDVTYEEAKQFAEE--NGLLFLEASAKTGENVEDAFLEAA 169
>sp|P61107|RAB14_RAT Ras-related protein Rab-14
sp|P61106|RAB14_HUMAN Ras-related protein Rab-14
Length = 215
Score = 149 bits (377), Expect = 3e-36
Identities = 74/166 (44%), Positives = 116/166 (69%)
Frame = +1
Query: 16 FHYQFRIILIGDSMVGKSSLVRCFSEGKFSEVCDPTVGVDFFSRIIELPDKIRIKLQLWD 195
+ Y F+ I+IGD VGKS L+ F+E KF C T+GV+F +RIIE+ + +IKLQ+WD
Sbjct: 8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQ-KIKLQIWD 66
Query: 196 TAGQEKFRSITKSYYRNSVAAVLVFDITKRNSFDHLLEWYQEAKLCMKCNCPTFVVVGHK 375
TAGQE+FR++T+SYYR + A++V+DIT+R++++HL W +A+ N +++G+K
Sbjct: 67 TAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN-TVIILIGNK 125
Query: 376 ADMESERQVSTREARHFATDTIGDCIYIETSAVTGQNVENVFSNLA 513
AD+E++R V+ EA+ FA + +++E SA TG+NVE+ F A
Sbjct: 126 ADLEAQRDVTYEEAKQFAEE--NGLLFLEASAKTGENVEDAFLEAA 169
>sp|P53994|RAB2A_MOUSE Ras-related protein Rab-2A
Length = 212
Score = 147 bits (370), Expect = 2e-35
Identities = 77/166 (46%), Positives = 113/166 (68%)
Frame = +1
Query: 16 FHYQFRIILIGDSMVGKSSLVRCFSEGKFSEVCDPTVGVDFFSRIIELPDKIRIKLQLWD 195
+ Y F+ I+IGD+ VGKS L+ F++ +F V D T+GV+F +R+I + K +IKLQ+WD
Sbjct: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGK-QIKLQIWD 61
Query: 196 TAGQEKFRSITKSYYRNSVAAVLVFDITKRNSFDHLLEWYQEAKLCMKCNCPTFVVVGHK 375
TAGQE FRSIT+SYYR + A+LV+DIT+R++F+HL W ++A+ N +++G+K
Sbjct: 62 TAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNM-VIMLIGNK 120
Query: 376 ADMESERQVSTREARHFATDTIGDCIYIETSAVTGQNVENVFSNLA 513
+D+ES R+V E FA + I++ETSA T NVE F N A
Sbjct: 121 SDLESRREVKKEEGEAFARE--HGLIFMETSAKTASNVEEAFINTA 164
>sp|P61019|RAB2A_HUMAN Ras-related protein Rab-2A
sp|P61105|RAB2A_CANFA Ras-related protein Rab-2A
Length = 212
Score = 147 bits (370), Expect = 2e-35
Identities = 77/166 (46%), Positives = 113/166 (68%)
Frame = +1
Query: 16 FHYQFRIILIGDSMVGKSSLVRCFSEGKFSEVCDPTVGVDFFSRIIELPDKIRIKLQLWD 195
+ Y F+ I+IGD+ VGKS L+ F++ +F V D T+GV+F +R+I + K +IKLQ+WD
Sbjct: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGK-QIKLQIWD 61
Query: 196 TAGQEKFRSITKSYYRNSVAAVLVFDITKRNSFDHLLEWYQEAKLCMKCNCPTFVVVGHK 375
TAGQE FRSIT+SYYR + A+LV+DIT+R++F+HL W ++A+ N +++G+K
Sbjct: 62 TAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNM-VIMLIGNK 120
Query: 376 ADMESERQVSTREARHFATDTIGDCIYIETSAVTGQNVENVFSNLA 513
+D+ES R+V E FA + I++ETSA T NVE F N A
Sbjct: 121 SDLESRREVKKEEGEAFARE--HGLIFMETSAKTASNVEEAFINTA 164
>sp|Q01971|RAB2A_RABIT Ras-related protein Rab-2A
Length = 212
Score = 147 bits (370), Expect = 2e-35
Identities = 77/166 (46%), Positives = 113/166 (68%)
Frame = +1
Query: 16 FHYQFRIILIGDSMVGKSSLVRCFSEGKFSEVCDPTVGVDFFSRIIELPDKIRIKLQLWD 195
+ Y F+ I+IGD+ VGKS L+ F++ +F V D T+GV+F +R+I + K +IKLQ+WD
Sbjct: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGK-QIKLQIWD 61
Query: 196 TAGQEKFRSITKSYYRNSVAAVLVFDITKRNSFDHLLEWYQEAKLCMKCNCPTFVVVGHK 375
TAGQE FRSIT+SYYR + A+LV+DIT+R++F+HL W ++A+ N +++G+K
Sbjct: 62 TAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNM-VIMLIGNK 120
Query: 376 ADMESERQVSTREARHFATDTIGDCIYIETSAVTGQNVENVFSNLA 513
+D+ES R+V E FA + I++ETSA T NVE F N A
Sbjct: 121 SDLESRREVKKEEGEAFARE--HGLIFMETSAKTASNVEEAFINTA 164
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,746,222
Number of Sequences: 369166
Number of extensions: 1043871
Number of successful extensions: 4700
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3848
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3354254700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)