Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_E01
(474 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q6VY07|PACS1_HUMAN Phosphofurin acidic cluster sorting p... 49 6e-06
sp|Q8K212|PACS1_MOUSE Phosphofurin acidic cluster sorting p... 45 6e-05
sp|O88588|PACS1_RAT Phosphofurin acidic cluster sorting pro... 45 1e-04
sp|Q9PQD7|TRUB_UREPA tRNA pseudouridine synthase B (tRNA ps... 30 2.8
sp|Q10110|YAQB_SCHPO Hypothetical protein C18G6.11c in chro... 30 3.7
sp|P29477|NOS2_MOUSE Nitric oxide synthase, inducible (NOS ... 29 4.8
sp|Q8K9R0|LEP_BUCAP Signal peptidase I (SPase I) (Leader pe... 29 4.8
sp|P07712|AGN5_APLCA Abdominal ganglion neuropeptides L5-67... 29 6.3
sp|Q61809|LRRN1_MOUSE Leucine-rich repeats neuronal protein... 29 6.3
sp|O42790|PLB_NEUCR Lysophospholipase precursor (Phospholip... 29 6.3
>sp|Q6VY07|PACS1_HUMAN Phosphofurin acidic cluster sorting protein 1 (PACS-1)
Length = 963
Score = 48.9 bits (115), Expect = 6e-06
Identities = 41/158 (25%), Positives = 71/158 (44%), Gaps = 1/158 (0%)
Frame = +1
Query: 4 IKICLLGGDCHLSSVLRVFVDQMNLNYSKEIVNCFRFFLIPITGFSLSTANTSNSFVNPG 183
+K+ +GG +LSS+LR FV + N + + + RF +IP+
Sbjct: 624 VKVAAVGGQSYLSSILRFFVKSL-ANKTSDWLGYMRFLIIPLGS---------------- 666
Query: 184 NMIHNSMARRLCSIDSKYASLFAEFIQLENVSSSYSIVERNNKFLFGVHDYLQ-ANGTLQ 360
+ +A+ L S+DSKY+S F + + S S V V Y+ A T Q
Sbjct: 667 ----HPVAKYLGSVDSKYSSSFLDSGWRDLFSRSEPPVSEQLDVAGRVMQYVNGAATTHQ 722
Query: 361 CPIGDCLVACSVRQQNITQDCDSSAESFIPFVCEVRLG 474
P+ + ++ C + + + S + FIPF+ V++G
Sbjct: 723 LPVAEAMLTCRHKFPD-----EDSYQKFIPFIGVVKVG 755
>sp|Q8K212|PACS1_MOUSE Phosphofurin acidic cluster sorting protein 1 (PACS-1)
Length = 961
Score = 45.4 bits (106), Expect = 6e-05
Identities = 38/158 (24%), Positives = 71/158 (44%), Gaps = 1/158 (0%)
Frame = +1
Query: 4 IKICLLGGDCHLSSVLRVFVDQMNLNYSKEIVNCFRFFLIPITGFSLSTANTSNSFVNPG 183
+K+ +G +LSS+LR FV + + + + + RF +IP+
Sbjct: 622 VKVAAVGSQSYLSSILRFFVKSL-ASKTPDWLGYMRFLIIPLGS---------------- 664
Query: 184 NMIHNSMARRLCSIDSKYASLFAEFIQLENVSSSYSIVERNNKFLFGVHDYLQ-ANGTLQ 360
+ +A+ L S+DS+Y+S F + + S S V + V Y+ A T Q
Sbjct: 665 ----HPVAKYLGSVDSRYSSTFLDSAWRDLFSRSEPPVSEPLDVVGRVMQYVNGATTTHQ 720
Query: 361 CPIGDCLVACSVRQQNITQDCDSSAESFIPFVCEVRLG 474
P+ + ++ C + + + S + FIPF+ V++G
Sbjct: 721 LPVAEAMLTCRHKFPD-----EDSYQKFIPFIGVVKVG 753
>sp|O88588|PACS1_RAT Phosphofurin acidic cluster sorting protein 1 (PACS-1)
Length = 961
Score = 44.7 bits (104), Expect = 1e-04
Identities = 37/158 (23%), Positives = 71/158 (44%), Gaps = 1/158 (0%)
Frame = +1
Query: 4 IKICLLGGDCHLSSVLRVFVDQMNLNYSKEIVNCFRFFLIPITGFSLSTANTSNSFVNPG 183
+K+ +G +LSS+LR FV + + + + + RF ++P+
Sbjct: 622 VKVAAVGSQSYLSSILRFFVKSL-ASKTPDWLGHMRFLIVPLGS---------------- 664
Query: 184 NMIHNSMARRLCSIDSKYASLFAEFIQLENVSSSYSIVERNNKFLFGVHDYLQ-ANGTLQ 360
+ +A+ L S+DS+Y+S F + + S S V + V Y+ A T Q
Sbjct: 665 ----HPVAKYLGSVDSRYSSTFLDSAWRDLFSRSEPPVSEPLDVVGRVMQYVNGATTTHQ 720
Query: 361 CPIGDCLVACSVRQQNITQDCDSSAESFIPFVCEVRLG 474
P+ + ++ C + + + S + FIPF+ V++G
Sbjct: 721 LPVAEAMLTCRHKFPD-----EDSYQKFIPFIGVVKVG 753
>sp|Q9PQD7|TRUB_UREPA tRNA pseudouridine synthase B (tRNA pseudouridine 55 synthase)
(Psi55 synthase) (tRNA-uridine isomerase) (tRNA
pseudouridylate synthase)
Length = 227
Score = 30.0 bits (66), Expect = 2.8
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +2
Query: 116 FLYQSLDFLYLRQILRIHLLTQEI*YIIVWLVDYVPLIRNM 238
F YQ +DF Y +QIL+I L + Y+ + VD I N+
Sbjct: 151 FKYQIMDFNYEKQILKISLHVSKGFYVRSFAVDLATKINNL 191
>sp|Q10110|YAQB_SCHPO Hypothetical protein C18G6.11c in chromosome I
Length = 599
Score = 29.6 bits (65), Expect = 3.7
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Frame = +1
Query: 76 LNYSKEIVNCFRFFLIPITGFSLSTANTSNSFVNPGNMIHNSMARRLCSIDSKYAS---- 243
+N S + CFR+ + ++ S S N ++ ++H S+ RL + +Y S
Sbjct: 454 INQSIFYIFCFRWRELCVSDESESMEPRPNEWIPGLEILHRSVLSRLNPL--RYCSPNIV 511
Query: 244 -LFAEFIQLENVSSSYSIVERNNKFLF 321
FA+ N YSI+E+N K +F
Sbjct: 512 LQFAKVANHLNFMYVYSIIEQNRKGIF 538
>sp|P29477|NOS2_MOUSE Nitric oxide synthase, inducible (NOS type II) (Inducible NOS)
(iNOS) (Macrophage NOS) (MAC-NOS)
Length = 1144
Score = 29.3 bits (64), Expect = 4.8
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = -1
Query: 414 SNILLPNTACHQTVSDWTL*SAICLEIIMNPK 319
S +L +T H+ SD+T S CL IMNPK
Sbjct: 86 SGEILHDTLHHKATSDFTCKSKSCLGSIMNPK 117
>sp|Q8K9R0|LEP_BUCAP Signal peptidase I (SPase I) (Leader peptidase I)
Length = 312
Score = 29.3 bits (64), Expect = 4.8
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +2
Query: 146 LRQILRIHLLTQEI*YIIVWLVDYVPLIRN 235
+R IL I LLT I+W++D++ LI+N
Sbjct: 1 MRNILTIFLLTSTFFTGILWIIDHILLIKN 30
>sp|P07712|AGN5_APLCA Abdominal ganglion neuropeptides L5-67 precursor [Contains: Luqin;
Luqin-B; Luqin-C; Proline-rich mature peptide (PRMP)]
Length = 112
Score = 28.9 bits (63), Expect = 6.3
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 121 IPITGFSLSTANTSNSFVNPGNMIHNSMARRLCSI 225
+P GFS A F NP +++H+ RLCS+
Sbjct: 50 LPDFGFSHLPALPLELFYNPRDLVHSGFRPRLCSV 84
>sp|Q61809|LRRN1_MOUSE Leucine-rich repeats neuronal protein 1 precursor (NLRR-1)
Length = 716
Score = 28.9 bits (63), Expect = 6.3
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Frame = -3
Query: 382 PNSLRLDI-----VKCHLLGDNHEPQKEIYYFVPLSNTMTTHFLTE 260
PN L +DI + C + EP+ EIY+ P+ N +T L++
Sbjct: 432 PNHLNMDIGTTLFLDCRAMA---EPEPEIYWVTPIGNKITVETLSD 474
>sp|O42790|PLB_NEUCR Lysophospholipase precursor (Phospholipase B)
Length = 653
Score = 28.9 bits (63), Expect = 6.3
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Frame = +1
Query: 250 AEFIQLENVSS---SYSIVERNNKFLFGVHDYLQANGTLQCPIGDCLVACSVRQQNI 411
A + L NVS+ SY++ +RN+ G + Q NGTL C VAC+V +++
Sbjct: 526 APYTALSNVSTFDPSYTMSQRNDIIGNGWNSATQGNGTLDSEWPTC-VACAVISRSL 581
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,203,325
Number of Sequences: 369166
Number of extensions: 1139848
Number of successful extensions: 2603
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2599
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2783017720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)