Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_D24
(761 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P55209|NP1L1_HUMAN Nucleosome assembly protein 1-like 1 ... 196 6e-50
sp|P28656|NP1L1_MOUSE Nucleosome assembly protein 1-like 1 ... 195 1e-49
sp|Q9Z2G8|NP1L1_RAT Nucleosome assembly protein 1-like 1 (N... 187 3e-47
sp|Q99733|NP1L4_HUMAN Nucleosome assembly protein 1-like 4 ... 184 2e-46
sp|P51860|NP1L2_MOUSE Nucleosome assembly protein 1-like 2 ... 145 2e-34
sp|Q9ULW6|NP1L2_HUMAN Nucleosome assembly protein 1-like 2 ... 142 1e-33
sp|O59797|YCO6_SCHPO Putative nucleosome assembly protein C... 126 7e-29
sp|P78920|YB31_SCHPO Putative nucleosome assembly protein C... 124 2e-28
sp|P25293|NAP1_YEAST Nucleosome assembly protein 115 1e-25
sp|Q99457|NP1L3_HUMAN Nucleosome assembly protein 1-like 3 115 2e-25
>sp|P55209|NP1L1_HUMAN Nucleosome assembly protein 1-like 1 (NAP-1 related protein) (hNRP)
Length = 391
Score = 196 bits (498), Expect = 6e-50
Identities = 96/186 (51%), Positives = 126/186 (67%), Gaps = 1/186 (0%)
Frame = +1
Query: 13 DNNDVRGVPEFWLTVLENSELIRYNIQEHDKPILKHLIDMKCVLKNEDEH-GFVLEFYFS 189
+ D +G+PEFWLTV +N +L+ +QEHD+PILKHL D+K + + FVLEF+F
Sbjct: 160 EKEDPKGIPEFWLTVFKNVDLLSDMVQEHDEPILKHLKDIKVKFSDAGQPMSFVLEFHFE 219
Query: 190 PNEFFSDEKLTKEYFVHVNAPTECPFEYEGPEIVRTVGCNIHWLPGKNVTVKLVKKVQKC 369
PNE+F++E LTK Y + PF ++GPEI+ GC I W GKNVT+K +KK QK
Sbjct: 220 PNEYFTNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCTGCQIDWKKGKNVTLKTIKKKQKH 279
Query: 370 KNRSEKRTVTKVVKNDSFFNFFEPPTESLDGEDDIPSEIESLLESDFEMGQYIRERIIPR 549
K R RTVTK V NDSFFNFF PP G D+ + E++L +DFE+G ++RERIIPR
Sbjct: 280 KGRGTVRTVTKTVSNDSFFNFFAPPEVPESG--DLDDDAEAILAADFEIGHFLRERIIPR 337
Query: 550 AVLYFT 567
+VLYFT
Sbjct: 338 SVLYFT 343
>sp|P28656|NP1L1_MOUSE Nucleosome assembly protein 1-like 1 (NAP-1 related protein) (Brain
protein DN38)
Length = 391
Score = 195 bits (496), Expect = 1e-49
Identities = 95/186 (51%), Positives = 127/186 (68%), Gaps = 1/186 (0%)
Frame = +1
Query: 13 DNNDVRGVPEFWLTVLENSELIRYNIQEHDKPILKHLIDMKCVLKNEDEH-GFVLEFYFS 189
+ D +G+PEFWLTV +N +L+ +QEHD+PILKHL D+K + + FVLEF+F
Sbjct: 160 EKEDPKGIPEFWLTVFKNVDLLSDMVQEHDEPILKHLKDIKVKFSDAGQPMSFVLEFHFE 219
Query: 190 PNEFFSDEKLTKEYFVHVNAPTECPFEYEGPEIVRTVGCNIHWLPGKNVTVKLVKKVQKC 369
PN++F++E LTK Y + PF ++GPEI+ GC I W GKNVT+K +KK QK
Sbjct: 220 PNDYFTNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCTGCQIDWKKGKNVTLKTIKKKQKH 279
Query: 370 KNRSEKRTVTKVVKNDSFFNFFEPPTESLDGEDDIPSEIESLLESDFEMGQYIRERIIPR 549
K R RTVTK V NDSFFNFF PP +G D+ + E++L +DFE+G ++RERIIPR
Sbjct: 280 KGRGTVRTVTKTVSNDSFFNFFAPPEVPENG--DLDDDAEAILAADFEIGHFLRERIIPR 337
Query: 550 AVLYFT 567
+VLYFT
Sbjct: 338 SVLYFT 343
>sp|Q9Z2G8|NP1L1_RAT Nucleosome assembly protein 1-like 1 (NAP-1 related protein)
Length = 390
Score = 187 bits (475), Expect = 3e-47
Identities = 93/186 (50%), Positives = 125/186 (67%), Gaps = 1/186 (0%)
Frame = +1
Query: 13 DNNDVRGVPEFWLTVLENSELIRYNIQEHDKPILKHLIDMKCVLKNEDEH-GFVLEFYFS 189
+ D +G+PEFWLTV +N +L+ +QEHD+PILKHL D+K + + F+LEF+F
Sbjct: 160 EKEDPKGIPEFWLTVFKN-DLLSDMVQEHDEPILKHLKDIKVKFSDAGQPMSFILEFHFE 218
Query: 190 PNEFFSDEKLTKEYFVHVNAPTECPFEYEGPEIVRTVGCNIHWLPGKNVTVKLVKKVQKC 369
PNE+F++E LTK Y + PF ++GPEI+ GC I W GKNVT+K +KK QK
Sbjct: 219 PNEYFTNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCTGCQIDWKKGKNVTLKTIKKKQKH 278
Query: 370 KNRSEKRTVTKVVKNDSFFNFFEPPTESLDGEDDIPSEIESLLESDFEMGQYIRERIIPR 549
K R RTVTK V SFFNFF PP +G D+ + E++L +DFE+G ++RERIIPR
Sbjct: 279 KGRGTVRTVTKTVSKTSFFNFFAPPEVPENG--DLDDDXEAILAADFEIGHFLRERIIPR 336
Query: 550 AVLYFT 567
+VLYFT
Sbjct: 337 SVLYFT 342
>sp|Q99733|NP1L4_HUMAN Nucleosome assembly protein 1-like 4 (Nucleosome assembly protein
2) (NAP2)
Length = 375
Score = 184 bits (468), Expect = 2e-46
Identities = 93/183 (50%), Positives = 120/183 (65%), Gaps = 1/183 (0%)
Frame = +1
Query: 22 DVRGVPEFWLTVLENSELIRYNIQEHDKPILKHLIDMKCVLKNEDEH-GFVLEFYFSPNE 198
D +G+PEFW T+ N +++ +QE+D+PILKHL D+K + + FVLEF+F PN+
Sbjct: 155 DPKGIPEFWFTIFRNVDMLSELVQEYDEPILKHLQDIKVKFSDPGQPMSFVLEFHFEPND 214
Query: 199 FFSDEKLTKEYFVHVNAPTECPFEYEGPEIVRTVGCNIHWLPGKNVTVKLVKKVQKCKNR 378
+F++ LTK Y + PF +EGPEIV GC I W GKNVTVK +KK QK K R
Sbjct: 215 YFTNSVLTKTYKMKSEPDKADPFSFEGPEIVDCDGCTIDWKKGKNVTVKTIKKKQKHKGR 274
Query: 379 SEKRTVTKVVKNDSFFNFFEPPTESLDGEDDIPSEIESLLESDFEMGQYIRERIIPRAVL 558
RT+TK V N+SFFNFF P S DGE + + E L SDFE+G + RERI+PRAVL
Sbjct: 275 GTVRTITKQVPNESFFNFFNPLKASGDGE-SLDEDSEFTLASDFEIGHFFRERIVPRAVL 333
Query: 559 YFT 567
YFT
Sbjct: 334 YFT 336
>sp|P51860|NP1L2_MOUSE Nucleosome assembly protein 1-like 2 (Brain-specific protein,
X-linked)
Length = 460
Score = 145 bits (365), Expect = 2e-34
Identities = 79/189 (41%), Positives = 111/189 (58%), Gaps = 1/189 (0%)
Frame = +1
Query: 4 EQIDNNDVRGVPEFWLTVLENSELIRYNIQEHDKPILKHLIDMKCVLKNEDEH-GFVLEF 180
E+++ D +G+P+FWLTVL+N E + I+++D+PILK L D+K L + E F LEF
Sbjct: 230 EEVNEEDPKGIPDFWLTVLKNVEALTPMIKKYDEPILKLLTDIKVKLSDPGEPLSFTLEF 289
Query: 181 YFSPNEFFSDEKLTKEYFVHVNAPTECPFEYEGPEIVRTVGCNIHWLPGKNVTVKLVKKV 360
+F PNE+F +E LTK Y + P Y G I GC+I W GKNVT++ +KK
Sbjct: 290 HFKPNEYFKNELLTKTYVLKSKLACYDPHPYRGTAIEYATGCDIDWNEGKNVTLRTIKKK 349
Query: 361 QKCKNRSEKRTVTKVVKNDSFFNFFEPPTESLDGEDDIPSEIESLLESDFEMGQYIRERI 540
Q+ + RTVT+ DSFFNFF P SL+G + DF +G +R I
Sbjct: 350 QRHRVWGTVRTVTEDFPKDSFFNFFSPHGISLNG---------GVENDDFLLGHNLRTYI 400
Query: 541 IPRAVLYFT 567
IPR+VL+F+
Sbjct: 401 IPRSVLFFS 409
>sp|Q9ULW6|NP1L2_HUMAN Nucleosome assembly protein 1-like 2 (Brain-specific protein,
X-linked)
Length = 460
Score = 142 bits (358), Expect = 1e-33
Identities = 79/190 (41%), Positives = 109/190 (57%), Gaps = 1/190 (0%)
Frame = +1
Query: 1 DEQIDNNDVRGVPEFWLTVLENSELIRYNIQEHDKPILKHLIDMKCVLKNEDEH-GFVLE 177
+E + D +G+P+FWLTVL+N + + I+++D+PILK L D+K L + E F LE
Sbjct: 229 EENKEEEDPKGIPDFWLTVLKNVDTLTPLIKKYDEPILKLLTDIKVKLSDPGEPLSFTLE 288
Query: 178 FYFSPNEFFSDEKLTKEYFVHVNAPTECPFEYEGPEIVRTVGCNIHWLPGKNVTVKLVKK 357
F+F PNE+F +E LTK Y + P Y G I + GC I W GKNVT+K +KK
Sbjct: 289 FHFKPNEYFKNELLTKTYVLKSKLAYYDPHPYRGTAIEYSTGCEIDWNEGKNVTLKTIKK 348
Query: 358 VQKCKNRSEKRTVTKVVKNDSFFNFFEPPTESLDGEDDIPSEIESLLESDFEMGQYIRER 537
QK + RTVT+ DSFFNFF P + +G D DF +G +R
Sbjct: 349 KQKHRIWGTIRTVTEDFPKDSFFNFFSPHGITSNGRDG---------NDDFLLGHNLRTY 399
Query: 538 IIPRAVLYFT 567
IIPR+VL+F+
Sbjct: 400 IIPRSVLFFS 409
>sp|O59797|YCO6_SCHPO Putative nucleosome assembly protein C364.06
Length = 393
Score = 126 bits (316), Expect = 7e-29
Identities = 70/189 (37%), Positives = 109/189 (57%), Gaps = 1/189 (0%)
Frame = +1
Query: 4 EQIDNNDVRGVPEFWLTVLENSELIRYNIQEHDKPILKHLIDMKCVLKNEDEHGFVLEFY 183
+Q +D +G+PEFWLT ++N + I D+ L HL+D++ + ++ GF LEF
Sbjct: 154 KQEGGDDTKGIPEFWLTAMKNVLSLSEMITPEDEGALSHLVDIR--ISYMEKPGFKLEFE 211
Query: 184 FSPNEFFSDEKLTKEYFVHVNAPTECPFEYEGPEIVRTVGCNIHWLPGKNVTVKLVKKVQ 363
F+ N FF+++ LTK Y+ + F Y+ E G + W ++TV+ V K Q
Sbjct: 212 FAENPFFTNKILTKTYYYMEESGPSNVFLYDHAE-----GDKVDWKENADLTVRTVTKKQ 266
Query: 364 KCKNRSEKRTVTKVVKNDSFFNFFEPPT-ESLDGEDDIPSEIESLLESDFEMGQYIRERI 540
+ KN + R V V DSFFNFF PPT S + E+ E++ LLE D+++G+ +E++
Sbjct: 267 RNKNTKQTRVVKVSVPRDSFFNFFNPPTPPSEEDEESESPELDELLELDYQIGEDFKEKL 326
Query: 541 IPRAVLYFT 567
IPRAV +FT
Sbjct: 327 IPRAVEWFT 335
>sp|P78920|YB31_SCHPO Putative nucleosome assembly protein C2D10.11C
Length = 379
Score = 124 bits (312), Expect = 2e-28
Identities = 70/188 (37%), Positives = 107/188 (56%), Gaps = 3/188 (1%)
Frame = +1
Query: 1 DEQIDNN--DVRGVPEFWLTVLENSELIRYNIQEHDKPILKHLIDMKCVLKNEDEHGFVL 174
+E NN D +G+PEFWLT L N L+ I D+ +L+ L D++ + D HG+ L
Sbjct: 153 EEIFQNNLPDPKGIPEFWLTCLHNVFLVGEMITPEDENVLRSLSDIRFTNLSGDVHGYKL 212
Query: 175 EFYFSPNEFFSDEKLTKEYFVHVNAPTECPFEYEGPEIVRTVGCNIHWL-PGKNVTVKLV 351
EF F N++F+++ LTK Y+ + F Y+ E G I+W+ P KN+TV++
Sbjct: 213 EFEFDSNDYFTNKILTKTYYYKDDLSPSGEFLYDHAE-----GDKINWIKPEKNLTVRVE 267
Query: 352 KKVQKCKNRSEKRTVTKVVKNDSFFNFFEPPTESLDGEDDIPSEIESLLESDFEMGQYIR 531
K Q+ + ++ R V V NDSFFNFF PP D DD + LLE D+++G+ +
Sbjct: 268 TKKQRNRKTNQTRLVRTTVPNDSFFNFFSPPQLDDDESDDGLDDKTELLELDYQLGEVFK 327
Query: 532 ERIIPRAV 555
++IIP A+
Sbjct: 328 DQIIPLAI 335
>sp|P25293|NAP1_YEAST Nucleosome assembly protein
Length = 417
Score = 115 bits (288), Expect = 1e-25
Identities = 65/189 (34%), Positives = 104/189 (55%), Gaps = 4/189 (2%)
Frame = +1
Query: 13 DNNDVRGVPEFWLTVLENSELIRYNIQEHDKPILKHLIDMKCVLKNEDEHGFVLEFYF-- 186
+ V+G+P FWLT LEN ++ I + D +L++L D+ + GF L F F
Sbjct: 178 EEEQVKGIPSFWLTALENLPIVCDTITDRDAEVLEYLQDIGLEYLTDGRPGFKLLFRFDS 237
Query: 187 SPNEFFSDEKLTKEYFVHVNAPTECPFEYEGPEIVRTVGCNIHWLP-GKNVTVKLVKKVQ 363
S N FF+++ L K YF F Y+ E GC I W NVTV L + Q
Sbjct: 238 SANPFFTNDILCKTYFYQKELGYSGDFIYDHAE-----GCEISWKDNAHNVTVDLEMRKQ 292
Query: 364 KCKNRSEKRTVTKVVKNDSFFNFFEPP-TESLDGEDDIPSEIESLLESDFEMGQYIRERI 540
+ K + RT+ K+ +SFFNFF+PP ++ D ++++ ++E L D+ +G+ +++++
Sbjct: 293 RNKTTKQVRTIEKITPIESFFNFFDPPKIQNEDQDEELEEDLEERLALDYSIGEQLKDKL 352
Query: 541 IPRAVLYFT 567
IPRAV +FT
Sbjct: 353 IPRAVDWFT 361
>sp|Q99457|NP1L3_HUMAN Nucleosome assembly protein 1-like 3
Length = 506
Score = 115 bits (287), Expect = 2e-25
Identities = 65/183 (35%), Positives = 101/183 (55%), Gaps = 1/183 (0%)
Frame = +1
Query: 22 DVRGVPEFWLTVLENSELIRYNIQEHDKPILKHLIDMKCVLKNEDEH-GFVLEFYFSPNE 198
D +G+P++WL VL+N + + IQ++D+PILK L D+ + + EF+F PN
Sbjct: 307 DPKGIPDYWLIVLKNVDKLGPMIQKYDEPILKFLSDVSLKFSKPGQPVSYTFEFHFLPNP 366
Query: 199 FFSDEKLTKEYFVHVNAPTECPFEYEGPEIVRTVGCNIHWLPGKNVTVKLVKKVQKCKNR 378
+F +E L K Y + PF G EI GC I W GK+VTV + +
Sbjct: 367 YFRNEVLVKTYIIKAKPDHNDPFFSWGWEIEDCKGCKIDWRRGKDVTVTTTQ--SRTTAT 424
Query: 379 SEKRTVTKVVKNDSFFNFFEPPTESLDGEDDIPSEIESLLESDFEMGQYIRERIIPRAVL 558
E +VV N SFFNFF PP + G+ + P E +++L+ DFE+GQ + + +I +++
Sbjct: 425 GEIEIQPRVVPNASFFNFFSPPEIPMIGKLE-pre-DAILDEDFEIGQILHDNVILKSIY 482
Query: 559 YFT 567
Y+T
Sbjct: 483 YYT 485
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,482,537
Number of Sequences: 369166
Number of extensions: 1464137
Number of successful extensions: 4069
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4045
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7018522000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)