Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_D19
(715 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q6P8G1|ILF2_XENTR Interleukin enhancer-binding factor 2 ... 186 7e-47
sp|Q9CXY6|ILF2_MOUSE Interleukin enhancer-binding factor 2 ... 182 8e-46
sp|Q6NZ06|ILF2_BRARE Interleukin enhancer-binding factor 2 ... 172 8e-43
sp|Q9VG73|ILF2_DROME Interleukin enhancer-binding factor 2 ... 170 4e-42
sp|Q7TP98|ILF2_RAT Interleukin enhancer-binding factor 2 (L... 148 1e-35
sp|Q9CDW7|RL22_LACLA 50S ribosomal protein L22 33 0.58
sp|O66776|GLYA_AQUAE Serine hydroxymethyltransferase (Serin... 33 0.76
sp|Q8DS19|RL22_STRMU 50S ribosomal protein L22 33 0.99
sp|Q8E2C7|RL22_STRA5 50S ribosomal protein L22 >gi|51316850... 32 1.3
sp|Q6NXA4|ILF3_BRARE Interleukin enhancer-binding factor 3 ... 32 1.7
>sp|Q6P8G1|ILF2_XENTR Interleukin enhancer-binding factor 2 homolog
Length = 388
Score = 186 bits (471), Expect = 7e-47
Identities = 93/186 (50%), Positives = 125/186 (67%)
Frame = +3
Query: 6 ALVTQLSTIMDELIINPAAFEAAQFEELRLVGSYKKGTMLTGQNIADAVIIFKTLPTKEA 185
+LVT+++ ++D LI+ P FE Q EE+R VGSYKKGTM TG N+AD V+I K LPT EA
Sbjct: 75 SLVTKINNVIDNLIVAPGNFEV-QIEEVRQVGSYKKGTMSTGHNVADLVVILKILPTLEA 133
Query: 186 IQAFKDYLVEKMRNSDLANARFLTSDVRTYGFEIMTPGCSLRILVATMPINLKKLDSQLH 365
+ A +VE +R D A LT GFEI + +++IL+ T+P NL+KLD +LH
Sbjct: 134 VSALGIKVVETLRTQDPAEV--LTMLTNETGFEISSADATVKILITTVPPNLRKLDPELH 191
Query: 366 LDTKVIQGSLAAVRHIRWFEDNAGHTSXXXXXXXXXXXXQRYEGFEALSPWIIDLLAHYA 545
LD KV+Q +LAA+RH RWFE+NA H++ R+ GFE L+PWI+DLL HYA
Sbjct: 192 LDIKVLQSALAAIRHARWFEENASHSTVKVLIRLLKDLRSRFPGFEPLTPWILDLLGHYA 251
Query: 546 ILNNPT 563
++NNPT
Sbjct: 252 VMNNPT 257
>sp|Q9CXY6|ILF2_MOUSE Interleukin enhancer-binding factor 2 (Nuclear factor of activated
T-cells 45 kDa)
sp|Q12905|ILF2_HUMAN Interleukin enhancer-binding factor 2 (Nuclear factor of activated
T-cells 45 kDa)
sp|Q5RFJ1|ILF2_PONPY Interleukin enhancer-binding factor 2
Length = 390
Score = 182 bits (462), Expect = 8e-46
Identities = 91/186 (48%), Positives = 125/186 (67%)
Frame = +3
Query: 6 ALVTQLSTIMDELIINPAAFEAAQFEELRLVGSYKKGTMLTGQNIADAVIIFKTLPTKEA 185
+LVT+++ ++D LI+ P FE Q EE+R VGSYKKGTM TG N+AD V+I K LPT EA
Sbjct: 76 SLVTKINNVIDNLIVAPGTFEV-QIEEVRQVGSYKKGTMTTGHNVADLVVILKILPTLEA 134
Query: 186 IQAFKDYLVEKMRNSDLANARFLTSDVRTYGFEIMTPGCSLRILVATMPINLKKLDSQLH 365
+ A + +VE +R D + LT GFEI + +++IL+ T+P NL+KLD +LH
Sbjct: 135 VAALGNKVVESLRAQDPSEV--LTMLTNETGFEISSSDATVKILITTVPPNLRKLDPELH 192
Query: 366 LDTKVIQGSLAAVRHIRWFEDNAGHTSXXXXXXXXXXXXQRYEGFEALSPWIIDLLAHYA 545
LD KV+Q +LAA+RH RWFE+NA ++ R+ GFE L+PWI+DLL HYA
Sbjct: 193 LDIKVLQSALAAIRHARWFEENASQSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYA 252
Query: 546 ILNNPT 563
++NNPT
Sbjct: 253 VMNNPT 258
>sp|Q6NZ06|ILF2_BRARE Interleukin enhancer-binding factor 2 homolog
Length = 387
Score = 172 bits (436), Expect = 8e-43
Identities = 87/187 (46%), Positives = 125/187 (66%), Gaps = 1/187 (0%)
Frame = +3
Query: 6 ALVTQLSTIMDELIINPAAFEAAQFEELRLVGSYKKGTMLTGQNIADAVIIFKTLPTKEA 185
+LVT+++ ++D LI+ P FE Q EE+R VGSYKKGTM G N+AD V+I K LPT EA
Sbjct: 76 SLVTKINNVIDNLIVAPGNFEV-QIEEVRQVGSYKKGTMTAGHNVADLVVILKILPTLEA 134
Query: 186 IQAFKDYLVEKMRNSDLANA-RFLTSDVRTYGFEIMTPGCSLRILVATMPINLKKLDSQL 362
+ A + +VE +R D + LT++ GFEI + +++IL+ T+P NL+KLD +L
Sbjct: 135 VAALGNKVVETLRTQDPSEVLSMLTNET---GFEISSADATVKILITTVPPNLRKLDPEL 191
Query: 363 HLDTKVIQGSLAAVRHIRWFEDNAGHTSXXXXXXXXXXXXQRYEGFEALSPWIIDLLAHY 542
HLD KV+Q +LAA+RH RWFE+NA ++ R+ GFE L+PWI+DLL H
Sbjct: 192 HLDIKVLQSALAAIRHARWFEENASQSTVKVLIRLLKDIRVRFPGFEPLTPWILDLLGHS 251
Query: 543 AILNNPT 563
A++N+P+
Sbjct: 252 AVMNHPS 258
>sp|Q9VG73|ILF2_DROME Interleukin enhancer-binding factor 2 homolog
Length = 396
Score = 170 bits (430), Expect = 4e-42
Identities = 84/192 (43%), Positives = 119/192 (61%), Gaps = 4/192 (2%)
Frame = +3
Query: 9 LVTQLSTIMDELIINPAAFEAAQFEELRLVGSYKKGTMLTGQNIADAVIIFKTLPTKEAI 188
LVT++ ++D L++ P Q EE+R VGS+KKGT+LTG N+AD V+I KTLPTKEA+
Sbjct: 77 LVTKVQAVLDNLVVAPGDLTTCQLEEVRQVGSFKKGTILTGNNVADVVVILKTLPTKEAV 136
Query: 189 QAFKDY----LVEKMRNSDLANARFLTSDVRTYGFEIMTPGCSLRILVATMPINLKKLDS 356
A L M+ L T + GF+I +RIL+AT+P NL+KL+
Sbjct: 137 DALAKKVEADLKASMKTEVLTKGDQHTVQIHERGFDIANVHAKVRILIATLPQNLRKLEP 196
Query: 357 QLHLDTKVIQGSLAAVRHIRWFEDNAGHTSXXXXXXXXXXXXQRYEGFEALSPWIIDLLA 536
++HLD K++Q LAA+RH RWFE+NA H+S +R++ F LS W++DL+A
Sbjct: 197 EIHLDHKLMQSHLAAIRHTRWFEENAHHSSIKVLIRILKDLTRRFDAFSPLSAWMLDLIA 256
Query: 537 HYAILNNPTNNA 572
H AI+NNP+ A
Sbjct: 257 HLAIMNNPSRQA 268
>sp|Q7TP98|ILF2_RAT Interleukin enhancer-binding factor 2 (Liver regeneration-related
protein LRRG031)
Length = 463
Score = 148 bits (374), Expect = 1e-35
Identities = 76/163 (46%), Positives = 98/163 (60%)
Frame = +3
Query: 75 QFEELRLVGSYKKGTMLTGQNIADAVIIFKTLPTKEAIQAFKDYLVEKMRNSDLANARFL 254
Q EE+R VGSYKKGTM TG N+AD V+I K LPT FL
Sbjct: 193 QIEEVRQVGSYKKGTMTTGHNVADLVVILKILPT------------------------FL 228
Query: 255 TSDVRTYGFEIMTPGCSLRILVATMPINLKKLDSQLHLDTKVIQGSLAAVRHIRWFEDNA 434
T GFEI + +++IL+ T+P NL+KLD +LHLD KV+Q +LAA+RH RWFE+NA
Sbjct: 229 TMLTNETGFEISSSDATVKILITTVPPNLRKLDPELHLDIKVLQSALAAIRHARWFEENA 288
Query: 435 GHTSXXXXXXXXXXXXQRYEGFEALSPWIIDLLAHYAILNNPT 563
++ R+ GFE L+PWI+DLL HYA++NNPT
Sbjct: 289 SQSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMNNPT 331
>sp|Q9CDW7|RL22_LACLA 50S ribosomal protein L22
Length = 115
Score = 33.5 bits (75), Expect = 0.58
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = +3
Query: 120 MLTGQNIADAVIIFKTLPTKEAIQAFKDYLVEKMRNSDLANA 245
++ G+ +ADA+ I K PTK A++ VE + NS +ANA
Sbjct: 27 LIRGKRVADAIAILKFTPTKAAVE------VENVLNSAIANA 62
>sp|O66776|GLYA_AQUAE Serine hydroxymethyltransferase (Serine methylase) (SHMT)
Length = 428
Score = 33.1 bits (74), Expect = 0.76
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +3
Query: 150 VIIFKTLPTKEAI-QAFKDYLVEKMRNSDLANARFLTSDVRTYGFEIMTPGCSLRILVAT 326
VI K + KEA+ + FK+Y + + N AR L +++ YGF+I+T G I++
Sbjct: 262 VIAAKAVAFKEAMSEEFKEYAKQVVEN-----ARVLAEELKKYGFKIVTGGTDSHIVLVD 316
Query: 327 M 329
+
Sbjct: 317 L 317
>sp|Q8DS19|RL22_STRMU 50S ribosomal protein L22
Length = 114
Score = 32.7 bits (73), Expect = 0.99
Identities = 18/42 (42%), Positives = 25/42 (59%)
Frame = +3
Query: 120 MLTGQNIADAVIIFKTLPTKEAIQAFKDYLVEKMRNSDLANA 245
++ G+N+ADA+ I K P K A +VEK NS +ANA
Sbjct: 27 LIRGKNVADAIAILKFTPNKAA------RIVEKTLNSAVANA 62
>sp|Q8E2C7|RL22_STRA5 50S ribosomal protein L22
sp|Q8E7T4|RL22_STRA3 50S ribosomal protein L22
Length = 114
Score = 32.3 bits (72), Expect = 1.3
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +3
Query: 120 MLTGQNIADAVIIFKTLPTKEAIQAFKDYLVEKMRNSDLANA 245
++ G+N+ADA+ I K P K A ++EK NS +ANA
Sbjct: 27 LIRGKNVADAIAILKFTPNKAA------RVIEKTLNSAIANA 62
>sp|Q6NXA4|ILF3_BRARE Interleukin enhancer-binding factor 3 homolog
Length = 833
Score = 32.0 bits (71), Expect = 1.7
Identities = 41/186 (22%), Positives = 73/186 (39%), Gaps = 17/186 (9%)
Frame = +3
Query: 96 VGSYKKGTMLTGQNIADAVIIFKTLPTKEAIQAFKDYLVEKMRNSDLANARFLTSDVRTY 275
VG KG +L G + V++ K PT ++ D L +++ + +R
Sbjct: 96 VGLVAKGLLLKGDLDLELVLLCKEKPTITLLKKVSDNLAVQLKQLVTEEKYDVKPCIRDA 155
Query: 276 GFEIMT---PGCSLRILVATMPINLKKLDSQLH------------LDTKVIQGSLAAVRH 410
I P +L I + T P+ ++++ Q LD + +LA++RH
Sbjct: 156 TIVIKNAKEPPLTLTIHL-TSPLVREEVEKQAAGETLSVIDPPDVLDRQKCLTALASLRH 214
Query: 411 IRWFEDNA-GHTSXXXXXXXXXXXXQRYEGFEALSPWIIDLLAHYAI-LNNPTNNAYQSI 584
+WF+ A G S R + L W ++LL AI N A +++
Sbjct: 215 AKWFQARANGLRSCVIVIRILRDLCARVPTWSPLRGWPLELLCEKAIGTGNRPMGAGEAL 274
Query: 585 KHLNAC 602
+ + C
Sbjct: 275 RRVLEC 280
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,256,707
Number of Sequences: 369166
Number of extensions: 1347391
Number of successful extensions: 2849
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2844
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6316483550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)