Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_D08
(467 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9V3C0|ABS_DROME DEAD-box protein abstrakt 60 2e-09
sp|Q9UJV9|DDX41_HUMAN Probable ATP-dependent helicase DDX41... 58 1e-08
sp|Q91VN6|DDX41_MOUSE Probable ATP-dependent helicase DDX41... 58 1e-08
sp|Q9D967|MGDP1_MOUSE Magnesium-dependent phosphatase 1 (MD... 55 1e-07
sp|Q86V88|MGDP1_HUMAN Magnesium-dependent phosphatase 1 (MD... 54 2e-07
sp|P40081|YEW4_YEAST Hypothetical 20.4 kDa protein in GLC7-... 41 0.002
sp|P53416|BBS_PHASS Bibenzyl synthase 30 2.7
sp|P00729|CBPY_YEAST Carboxypeptidase Y precursor (Carboxyp... 30 3.5
sp|P31622|GAG_JSRV Gag polyprotein [Contains: Core protein ... 29 4.6
sp|P75600|Y092_MYCPN Very hypothetical mgpC-like protein MP... 29 4.6
>sp|Q9V3C0|ABS_DROME DEAD-box protein abstrakt
Length = 619
Score = 60.5 bits (145), Expect = 2e-09
Identities = 26/42 (61%), Positives = 35/42 (83%), Gaps = 2/42 (4%)
Frame = +2
Query: 218 GCSYCGGLGHRIIMCPKRESLQNRQAHDIGRKE--SHASADY 337
GC+YCGGLGHRI CPK E++QN+QA +IGR++ S+ +ADY
Sbjct: 578 GCTYCGGLGHRITECPKLEAVQNKQASNIGRRDYLSNTAADY 619
>sp|Q9UJV9|DDX41_HUMAN Probable ATP-dependent helicase DDX41 (DEAD-box protein 41)
(DEAD-box protein abstrakt homolog)
Length = 622
Score = 57.8 bits (138), Expect = 1e-08
Identities = 24/45 (53%), Positives = 35/45 (77%), Gaps = 2/45 (4%)
Frame = +2
Query: 209 GDIGCSYCGGLGHRIIMCPKRESLQNRQAHDIGRKE--SHASADY 337
G+ GC++CGGLGHRI CPK E++Q +Q +IGRK+ +H+S D+
Sbjct: 578 GERGCAFCGGLGHRITDCPKLEAMQTKQVSNIGRKDYLAHSSMDF 622
>sp|Q91VN6|DDX41_MOUSE Probable ATP-dependent helicase DDX41 (DEAD-box protein 41)
Length = 622
Score = 57.8 bits (138), Expect = 1e-08
Identities = 24/45 (53%), Positives = 35/45 (77%), Gaps = 2/45 (4%)
Frame = +2
Query: 209 GDIGCSYCGGLGHRIIMCPKRESLQNRQAHDIGRKE--SHASADY 337
G+ GC++CGGLGHRI CPK E++Q +Q +IGRK+ +H+S D+
Sbjct: 578 GERGCAFCGGLGHRITDCPKLEAMQTKQVSNIGRKDYLAHSSMDF 622
>sp|Q9D967|MGDP1_MOUSE Magnesium-dependent phosphatase 1 (MDP-1)
Length = 164
Score = 54.7 bits (130), Expect = 1e-07
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Frame = +1
Query: 19 LLVFDLDMTMWPFHLDMETDPPF-KKTESKIIDSRGRKVSFYPDAEGILQSLKLNPKIRL 195
L VFDLD T+WPF +D DPPF K ++ + D RG+ + YP+ +L L+ + + +
Sbjct: 7 LAVFDLDYTLWPFWVDTHVDPPFHKSSDGTVRDRRGQNIQLYPEVPEVLGRLQ-SLGVPV 65
Query: 196 ACASRRHWMQ 225
A ASR +Q
Sbjct: 66 AAASRTSEIQ 75
>sp|Q86V88|MGDP1_HUMAN Magnesium-dependent phosphatase 1 (MDP-1)
Length = 176
Score = 53.9 bits (128), Expect = 2e-07
Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Frame = +1
Query: 19 LLVFDLDMTMWPFHLDMETDPPF-KKTESKIIDSRGRKVSFYPDAEGILQSLK 174
L VFDLD T+WPF +D DPPF K ++ + D RG+ V YP+ +L+ L+
Sbjct: 7 LAVFDLDYTLWPFWVDTHVDPPFHKSSDGTVRDRRGQDVRLYPEVPEVLKRLQ 59
>sp|P40081|YEW4_YEAST Hypothetical 20.4 kDa protein in GLC7-GDI1 intergenic region
Length = 178
Score = 40.8 bits (94), Expect = 0.002
Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Frame = +1
Query: 28 FDLDMTMWPFHLDMETDPPFKKTESK------IIDSRGRKVSFYPDAEGILQSLKLNPKI 189
FDLD T+WP + D PFK +S II G +++ Y D IL LK N +
Sbjct: 10 FDLDYTIWPCYCDTHLHGPFKPVKSSNGEVLTIICRDGYELTIYKDIPRILGDLKDN-GV 68
Query: 190 RLACASRRHWMQLLWRTGAQNYHVSQAGV 276
+L ASR W + + + + V AGV
Sbjct: 69 KLMTASRT-WAPEIAQEILKIFKVKYAGV 96
>sp|P53416|BBS_PHASS Bibenzyl synthase
Length = 390
Score = 30.0 bits (66), Expect = 2.7
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = +3
Query: 171 KIKSKNQVGLCIEETLDAVIVEDWGTELSCVPSGSHCRIDKLMILVAKSPMLLQITEFIL 350
+I SKN VG C+EE + DW + G +D++ V P L ++ +L
Sbjct: 274 QIVSKN-VGKCLEEAFTPFGISDWNSIFWVPHPGGRAILDQVEERVGLKPEKLSVSRHVL 332
Query: 351 A 353
A
Sbjct: 333 A 333
>sp|P00729|CBPY_YEAST Carboxypeptidase Y precursor (Carboxypeptidase YSCY)
Length = 532
Score = 29.6 bits (65), Expect = 3.5
Identities = 16/69 (23%), Positives = 34/69 (49%)
Frame = +1
Query: 55 FHLDMETDPPFKKTESKIIDSRGRKVSFYPDAEGILQSLKLNPKIRLACASRRHWMQLLW 234
F LD++ D K+ +S ++D+ + YP+ L++ PK A +++ W ++
Sbjct: 41 FGLDLDLDHLLKELDSNVLDAWAQIEHLYPNQVMSLET-STKPKFPEAIKTKKDWDFVVK 99
Query: 235 RTGAQNYHV 261
+NY +
Sbjct: 100 NDAIENYQL 108
>sp|P31622|GAG_JSRV Gag polyprotein [Contains: Core protein p10; Core protein p18; Core
protein p12; Core protein p27; Core protein p14; Core
protein p4]
Length = 612
Score = 29.3 bits (64), Expect = 4.6
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 209 GDIGCSYCGGLGHRIIMCPKR 271
G+ GC CG GHR +CP++
Sbjct: 505 GNSGCFVCGQPGHRAAVCPQK 525
>sp|P75600|Y092_MYCPN Very hypothetical mgpC-like protein MPN092 (R02_orf173)
Length = 173
Score = 29.3 bits (64), Expect = 4.6
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 215 IGCSYCGGLGHRIIMCPKRESLQNRQAHDIGRK 313
+GC G+G R +M P R L +RQA + RK
Sbjct: 137 LGCRGGPGIGSRNLMSPHRAQLGHRQAEAVCRK 169
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,285,232
Number of Sequences: 369166
Number of extensions: 1048646
Number of successful extensions: 2744
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2742
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2683624230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)