Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_D06
(227 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P49154|RS2_URECA 40S ribosomal protein S2 87 2e-17
sp|P51403|RS2_CAEEL 40S ribosomal protein S2 82 4e-16
sp|P31009|RS2_DROME 40S ribosomal protein S2 (Strings of pe... 82 5e-16
sp|P15880|RS2_HUMAN 40S ribosomal protein S2 (S4) (LLRep3 p... 79 3e-15
sp|P27952|RS2_RAT 40S ribosomal protein S2 >gi|46397787|sp|... 79 3e-15
sp|Q90YS3|RS2_ICTPU 40S ribosomal protein S2 79 3e-15
sp|O18789|RS2_BOVIN 40S ribosomal protein S2 79 3e-15
sp|P46791|RS2_CRIGR 40S ribosomal protein S2 72 4e-13
sp|O43992|RS2_LEIAM 40S ribosomal protein S2 71 7e-13
sp|P49688|RS2_ARATH 40S ribosomal protein S2 71 9e-13
>sp|P49154|RS2_URECA 40S ribosomal protein S2
Length = 278
Score = 86.7 bits (213), Expect = 2e-17
Identities = 41/63 (65%), Positives = 48/63 (76%)
Frame = +2
Query: 2 KKLLSMAGIQDVYTSANGQTATLENFAKATYMAIRRTYEYLSPDLWNATPNTQNPFDEHA 181
KKLL+MAGI D YTSA GQTATL NFAKATY AI TY YL+PDLW T T++P+ E+
Sbjct: 197 KKLLAMAGIDDCYTSARGQTATLGNFAKATYAAIAATYSYLTPDLWRETVFTKSPYQEYT 256
Query: 182 KFL 190
+L
Sbjct: 257 DYL 259
>sp|P51403|RS2_CAEEL 40S ribosomal protein S2
Length = 272
Score = 82.0 bits (201), Expect = 4e-16
Identities = 37/63 (58%), Positives = 47/63 (74%)
Frame = +2
Query: 2 KKLLSMAGIQDVYTSANGQTATLENFAKATYMAIRRTYEYLSPDLWNATPNTQNPFDEHA 181
KKLL MAGI+D YT+A G TATL NFAKATY A++RTY YL+PDLW ++P+ H
Sbjct: 207 KKLLHMAGIEDCYTAAKGSTATLGNFAKATYAALQRTYSYLTPDLWKEEALEKSPYQRHH 266
Query: 182 KFL 190
++L
Sbjct: 267 EYL 269
>sp|P31009|RS2_DROME 40S ribosomal protein S2 (Strings of pearls protein)
Length = 267
Score = 81.6 bits (200), Expect = 5e-16
Identities = 38/63 (60%), Positives = 45/63 (71%)
Frame = +2
Query: 2 KKLLSMAGIQDVYTSANGQTATLENFAKATYMAIRRTYEYLSPDLWNATPNTQNPFDEHA 181
KKLL+MAGI+D YTSA G T TL NFAKATY AI +TY YL+PDLW P P+ ++
Sbjct: 194 KKLLTMAGIEDCYTSARGSTGTLGNFAKATYAAIAKTYAYLTPDLWKEMPLGSTPYQAYS 253
Query: 182 KFL 190
FL
Sbjct: 254 DFL 256
>sp|P15880|RS2_HUMAN 40S ribosomal protein S2 (S4) (LLRep3 protein)
Length = 293
Score = 79.0 bits (193), Expect = 3e-15
Identities = 39/63 (61%), Positives = 45/63 (71%)
Frame = +2
Query: 2 KKLLSMAGIQDVYTSANGQTATLENFAKATYMAIRRTYEYLSPDLWNATPNTQNPFDEHA 181
KKLL MAGI D YTSA G TATL NFAKAT+ AI +TY YL+PDLW T T++P+ E
Sbjct: 211 KKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFT 270
Query: 182 KFL 190
L
Sbjct: 271 DHL 273
>sp|P27952|RS2_RAT 40S ribosomal protein S2
sp|P25444|RS2_MOUSE 40S ribosomal protein S2 (S4) (LLRep3 protein)
Length = 293
Score = 79.0 bits (193), Expect = 3e-15
Identities = 39/63 (61%), Positives = 45/63 (71%)
Frame = +2
Query: 2 KKLLSMAGIQDVYTSANGQTATLENFAKATYMAIRRTYEYLSPDLWNATPNTQNPFDEHA 181
KKLL MAGI D YTSA G TATL NFAKAT+ AI +TY YL+PDLW T T++P+ E
Sbjct: 211 KKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFT 270
Query: 182 KFL 190
L
Sbjct: 271 DHL 273
>sp|Q90YS3|RS2_ICTPU 40S ribosomal protein S2
Length = 277
Score = 79.0 bits (193), Expect = 3e-15
Identities = 39/63 (61%), Positives = 45/63 (71%)
Frame = +2
Query: 2 KKLLSMAGIQDVYTSANGQTATLENFAKATYMAIRRTYEYLSPDLWNATPNTQNPFDEHA 181
KKLL MAGI D YTSA G TATL NFAKAT+ AI +TY YL+PDLW T T++P+ E
Sbjct: 196 KKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFT 255
Query: 182 KFL 190
L
Sbjct: 256 DHL 258
>sp|O18789|RS2_BOVIN 40S ribosomal protein S2
Length = 286
Score = 79.0 bits (193), Expect = 3e-15
Identities = 39/63 (61%), Positives = 45/63 (71%)
Frame = +2
Query: 2 KKLLSMAGIQDVYTSANGQTATLENFAKATYMAIRRTYEYLSPDLWNATPNTQNPFDEHA 181
KKLL MAGI D YTSA G TATL NFAKAT+ AI +TY YL+PDLW T T++P+ E
Sbjct: 204 KKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFT 263
Query: 182 KFL 190
L
Sbjct: 264 DHL 266
>sp|P46791|RS2_CRIGR 40S ribosomal protein S2
Length = 202
Score = 72.0 bits (175), Expect = 4e-13
Identities = 35/49 (71%), Positives = 38/49 (77%)
Frame = +2
Query: 2 KKLLSMAGIQDVYTSANGQTATLENFAKATYMAIRRTYEYLSPDLWNAT 148
KKLL MAGI D YTSA G TATL NFAKAT+ AI +TY YL+PDLW T
Sbjct: 151 KKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKET 199
>sp|O43992|RS2_LEIAM 40S ribosomal protein S2
Length = 265
Score = 71.2 bits (173), Expect = 7e-13
Identities = 31/63 (49%), Positives = 45/63 (71%)
Frame = +2
Query: 2 KKLLSMAGIQDVYTSANGQTATLENFAKATYMAIRRTYEYLSPDLWNATPNTQNPFDEHA 181
KK+L AG++DVYTS+ G+T T N AT+ A+R+TY +L+PDLW T +++P DEH
Sbjct: 197 KKILEFAGVEDVYTSSRGKTRTHGNLIMATFYALRKTYGFLTPDLWADTEPSRDPTDEHG 256
Query: 182 KFL 190
+ L
Sbjct: 257 ELL 259
>sp|P49688|RS2_ARATH 40S ribosomal protein S2
Length = 285
Score = 70.9 bits (172), Expect = 9e-13
Identities = 30/63 (47%), Positives = 44/63 (69%)
Frame = +2
Query: 2 KKLLSMAGIQDVYTSANGQTATLENFAKATYMAIRRTYEYLSPDLWNATPNTQNPFDEHA 181
KK+L AGI DV+TS+ G T TL NF KAT+ +++TY +L+P+ W T +++P+ EH
Sbjct: 205 KKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQEHT 264
Query: 182 KFL 190
FL
Sbjct: 265 DFL 267
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,137,667
Number of Sequences: 369166
Number of extensions: 423169
Number of successful extensions: 935
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 68,354,980
effective HSP length: 47
effective length of database: 59,672,435
effective search space used: 1670828180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)