Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_D05-2
(495 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P31939|PUR9_HUMAN Bifunctional purine biosynthesis prote... 30 2.4
sp|Q58347|PUR2_METJA Phosphoribosylamine--glycine ligase (G... 30 2.4
sp|Q01369|GBLP_NEUCR Guanine nucleotide-binding protein bet... 30 3.1
sp|Q94981|ARI1_DROME Ariadne-1 protein (Ari-1) 30 3.1
sp|P54032|RS24_METJA 30S ribosomal protein S24e 29 5.3
sp|P32006|PROF1_STRPU Profilin (SpCoel1) 29 5.3
sp|P27920|R1AB_IBVB Replicase polyprotein 1ab (pp1ab) (ORF1... 29 5.3
sp|Q91QT2|R1AB_IBVBC Replicase polyprotein 1ab (pp1ab) (ORF... 29 5.3
sp|Q12397|STCA_EMENI Putative sterigmatocystin biosynthesis... 28 9.0
sp|Q19020|DYHC_CAEEL Dynein heavy chain, cytosolic (DYHC) 28 9.0
>sp|P31939|PUR9_HUMAN Bifunctional purine biosynthesis protein PURH [Includes:
Phosphoribosylaminoimidazolecarboxamide
formyltransferase (AICAR transformylase); IMP
cyclohydrolase (Inosinicase) (IMP synthetase) (ATIC)]
Length = 592
Score = 30.4 bits (67), Expect = 2.4
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Frame = +1
Query: 16 ILDGYMASGFTEINNITIASS--NGAVCISRSKEGPTPDANEIAALV-KYLTSKQGSGL 183
+ DG +A G+ E +TI S NG C+ + + PD NE+ L +L+ K+ +G+
Sbjct: 337 VSDGIIAPGYEE-EALTILSKKKNGNYCVLQMDQSYKPDENEVRTLFGLHLSQKRNNGV 394
>sp|Q58347|PUR2_METJA Phosphoribosylamine--glycine ligase (GARS) (Glycinamide
ribonucleotide synthetase) (Phosphoribosylglycinamide
synthetase)
Length = 444
Score = 30.4 bits (67), Expect = 2.4
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = -2
Query: 146 NAAISFASGVGPSLLLLMHTAPLEEAIVILLISVKPDAI*PSKIAPQ 6
+A FA V P L ++ APL E +V LL + A+ P K+A Q
Sbjct: 54 DAVKEFAEKVKPDLAVIGPEAPLGEGVVDLLEEMGISAVGPKKLAAQ 100
>sp|Q01369|GBLP_NEUCR Guanine nucleotide-binding protein beta subunit-like protein
(Cross-pathway control WD-repeat protein cpc-2)
Length = 316
Score = 30.0 bits (66), Expect = 3.1
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +1
Query: 52 INNITIASSNGAVCISRSKEGPTP--DANEIAALVKYLTSKQGSGLTYGGHKLMFTREIE 225
IN +TI S +G++C S K+G T D NE L + + L + ++
Sbjct: 195 INAVTI-SPDGSLCASGGKDGTTMLWDLNESKHLYSLNANDEIHALVFSPNRYWLCAATS 253
Query: 226 DSIMIFNIIGASK 264
SI+IF++ SK
Sbjct: 254 SSIIIFDLEKKSK 266
>sp|Q94981|ARI1_DROME Ariadne-1 protein (Ari-1)
Length = 503
Score = 30.0 bits (66), Expect = 3.1
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 273 CIEQNC*HQFCYSCLWSW 326
C QNC ++FC+ CL SW
Sbjct: 309 CKNQNCKNEFCWVCLGSW 326
>sp|P54032|RS24_METJA 30S ribosomal protein S24e
Length = 101
Score = 29.3 bits (64), Expect = 5.3
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = -2
Query: 329 GPAPQARITKLVLAVLLNASAPLLAPIMLKIIIESSISR 213
GP P + KL LA +LNA+ LL I+ KI+ E+ + R
Sbjct: 27 GPTPTFKDVKLKLAAILNANKDLL--IVEKIVEEAGMQR 63
>sp|P32006|PROF1_STRPU Profilin (SpCoel1)
Length = 142
Score = 29.3 bits (64), Expect = 5.3
Identities = 35/127 (27%), Positives = 55/127 (43%), Gaps = 19/127 (14%)
Frame = +1
Query: 4 AWGAILDGYMA-----SGFTEINNITIASSNGAVCISRSKEGPTPDAN--------EIAA 144
+W + +D +A SG T + I +G+ + PT D + E+A
Sbjct: 2 SWDSYVDNLIAQSKDASGTTHCDKACIIGKDGSAWTTM----PTSDTSNNLKLTPEEMAN 57
Query: 145 LVKYLTSKQ-----GSGLTYGGHKLMFTREIEDSIMIFNIIGASKGALALS-KTASTNFV 306
+ K SK SG+ G K F RE EDS + ++G KG +L+ +++ T V
Sbjct: 58 IAKCFKSKDFAAFMSSGIYVNGTKYQFLRE-EDSKL---VLGKKKGEGSLTLQSSKTAIV 113
Query: 307 ILACGAG 327
I C G
Sbjct: 114 IGHCPEG 120
>sp|P27920|R1AB_IBVB Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein) [Includes:
Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p87;
p195 (Papain-like proteinase) (PL-PRO); Peptide HD2
(p41); 3C-like proteinase (3CL-PRO) (3CLp) (M-PRO)
(p33); p34; p9; p24; p10; Growth factor-like peptide
(GFL) (p16); RNA-directed RNA polymerase (RdRp) (Pol)
(p100); Helicase (Hel) (p68); p58; p39; p35]
Length = 6629
Score = 29.3 bits (64), Expect = 5.3
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 22/93 (23%)
Frame = +1
Query: 7 WGAILDGYMASGFTEINNITIASSNG------------AVCISRSKEGPTPDANEIAALV 150
W AILDG++ F + A +G VC+S +G TP+ N+ L
Sbjct: 330 WSAILDGHLCYVFRSGDRFYAAPLSGNFALSDVHCCERVVCLS---DGVTPEINDGLILA 386
Query: 151 KYLTS----------KQGSGLTYGGHKLMFTRE 219
+S K+G + GHK ++ ++
Sbjct: 387 AIYSSFSVSELVTALKKGEPFKFLGHKFVYAKD 419
>sp|Q91QT2|R1AB_IBVBC Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein) [Includes:
Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p87;
p195 (Papain-like proteinase) (PL-PRO); Peptide HD2
(p41); 3C-like proteinase (3CL-PRO) (3CLp) (M-PRO)
(p33); p34; p9; p24; p10; Growth factor-like peptide
(GFL) (p16); RNA-directed RNA polymerase (RdRp) (Pol)
(p100); Helicase (Hel) (p68); p58; p39; p35]
Length = 6629
Score = 29.3 bits (64), Expect = 5.3
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 22/93 (23%)
Frame = +1
Query: 7 WGAILDGYMASGFTEINNITIASSNG------------AVCISRSKEGPTPDANEIAALV 150
W AILDG++ F + A +G VC+S +G TP+ N+ L
Sbjct: 330 WSAILDGHLCYVFRSGDRFYAAPLSGNFALSDVHCCERVVCLS---DGVTPEINDGLILA 386
Query: 151 KYLTS----------KQGSGLTYGGHKLMFTRE 219
+S K+G + GHK ++ ++
Sbjct: 387 AIYSSFSVSELVTALKKGEPFKFLGHKFVYAKD 419
>sp|Q12397|STCA_EMENI Putative sterigmatocystin biosynthesis polyketide synthase (PKS)
Length = 2181
Score = 28.5 bits (62), Expect = 9.0
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +1
Query: 52 INNITIASSNGAVCISRSKEGPTPDANEIAALVKYLTSKQGSGLTY 189
INN + A N AV + ++ P P+ EIA Q S L+Y
Sbjct: 796 INNFSAAGGNTAVLV---EDAPVPELGEIAGSFGEAAGNQSSELSY 838
>sp|Q19020|DYHC_CAEEL Dynein heavy chain, cytosolic (DYHC)
Length = 4568
Score = 28.5 bits (62), Expect = 9.0
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -1
Query: 462 RIKINIEK*YNPNELFSINANYNDLF 385
R+K +E N NE+FSI + YN LF
Sbjct: 549 RLKSQLESSRNSNEMFSIFSRYNALF 574
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,478,921
Number of Sequences: 369166
Number of extensions: 966458
Number of successful extensions: 2490
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2489
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3069744620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)