Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_D05-1
(309 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P17126|ACT_HYDAT Actin, non-muscle 6.2 133 1e-31
sp|Q00215|ACTC_STYPL Actin, cytoplasmic 133 1e-31
sp|P53474|ACTE_STRPU Actin, cytoskeletal IIIA 133 1e-31
sp|P53470|ACT1_SCHMA Actin-1 133 1e-31
sp|P53458|ACT5_DIPDE Actin-5 133 1e-31
sp|P41113|ACT3_PODCA Actin-3 132 2e-31
sp|P41112|ACT1_PODCA Actin-1/2 132 2e-31
sp|P92179|ACTC_BIOGL Actin, cytoplasmic 132 2e-31
sp|P92176|ACT2_LUMTE Actin-2 132 2e-31
sp|P69005|ACTD_STRPU Actin, cytoskeletal IIB >gi|67462096|s... 132 2e-31
>sp|P17126|ACT_HYDAT Actin, non-muscle 6.2
Length = 376
Score = 133 bits (335), Expect = 1e-31
Identities = 63/65 (96%), Positives = 64/65 (98%)
Frame = -2
Query: 287 DRMQKEISALAPPTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIV 108
DRMQKEISALAPPTMKIKI+APPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP IV
Sbjct: 312 DRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIV 371
Query: 107 HRKCF 93
HRKCF
Sbjct: 372 HRKCF 376
>sp|Q00215|ACTC_STYPL Actin, cytoplasmic
Length = 375
Score = 133 bits (335), Expect = 1e-31
Identities = 63/65 (96%), Positives = 64/65 (98%)
Frame = -2
Query: 287 DRMQKEISALAPPTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIV 108
DRMQKEISALAPPTMKIKI+APPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP IV
Sbjct: 311 DRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIV 370
Query: 107 HRKCF 93
HRKCF
Sbjct: 371 HRKCF 375
>sp|P53474|ACTE_STRPU Actin, cytoskeletal IIIA
Length = 376
Score = 133 bits (335), Expect = 1e-31
Identities = 63/65 (96%), Positives = 64/65 (98%)
Frame = -2
Query: 287 DRMQKEISALAPPTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIV 108
DRMQKEISALAPPTMKIKI+APPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP IV
Sbjct: 312 DRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIV 371
Query: 107 HRKCF 93
HRKCF
Sbjct: 372 HRKCF 376
>sp|P53470|ACT1_SCHMA Actin-1
Length = 376
Score = 133 bits (334), Expect = 1e-31
Identities = 64/65 (98%), Positives = 64/65 (98%)
Frame = -2
Query: 287 DRMQKEISALAPPTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIV 108
DRMQKEISALAP TMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIV
Sbjct: 312 DRMQKEISALAPSTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIV 371
Query: 107 HRKCF 93
HRKCF
Sbjct: 372 HRKCF 376
>sp|P53458|ACT5_DIPDE Actin-5
Length = 371
Score = 133 bits (334), Expect = 1e-31
Identities = 64/65 (98%), Positives = 64/65 (98%)
Frame = -2
Query: 287 DRMQKEISALAPPTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIV 108
DRMQKEISALAP TMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIV
Sbjct: 307 DRMQKEISALAPSTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIV 366
Query: 107 HRKCF 93
HRKCF
Sbjct: 367 HRKCF 371
>sp|P41113|ACT3_PODCA Actin-3
Length = 376
Score = 132 bits (332), Expect = 2e-31
Identities = 62/65 (95%), Positives = 64/65 (98%)
Frame = -2
Query: 287 DRMQKEISALAPPTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIV 108
DRMQKEIS+LAPPTMKIKI+APPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP IV
Sbjct: 312 DRMQKEISSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIV 371
Query: 107 HRKCF 93
HRKCF
Sbjct: 372 HRKCF 376
>sp|P41112|ACT1_PODCA Actin-1/2
Length = 376
Score = 132 bits (332), Expect = 2e-31
Identities = 62/65 (95%), Positives = 64/65 (98%)
Frame = -2
Query: 287 DRMQKEISALAPPTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIV 108
DRMQKEIS+LAPPTMKIKI+APPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP IV
Sbjct: 312 DRMQKEISSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIV 371
Query: 107 HRKCF 93
HRKCF
Sbjct: 372 HRKCF 376
>sp|P92179|ACTC_BIOGL Actin, cytoplasmic
Length = 376
Score = 132 bits (332), Expect = 2e-31
Identities = 62/65 (95%), Positives = 64/65 (98%)
Frame = -2
Query: 287 DRMQKEISALAPPTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIV 108
DRMQKEI+ALAPPTMKIKI+APPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP IV
Sbjct: 312 DRMQKEITALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIV 371
Query: 107 HRKCF 93
HRKCF
Sbjct: 372 HRKCF 376
>sp|P92176|ACT2_LUMTE Actin-2
Length = 376
Score = 132 bits (332), Expect = 2e-31
Identities = 62/65 (95%), Positives = 64/65 (98%)
Frame = -2
Query: 287 DRMQKEISALAPPTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIV 108
DRMQKEI+ALAPPTMKIKI+APPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP IV
Sbjct: 312 DRMQKEITALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIV 371
Query: 107 HRKCF 93
HRKCF
Sbjct: 372 HRKCF 376
>sp|P69005|ACTD_STRPU Actin, cytoskeletal IIB
sp|P69004|ACT2_STRFN Actin-15B
Length = 376
Score = 132 bits (332), Expect = 2e-31
Identities = 62/65 (95%), Positives = 64/65 (98%)
Frame = -2
Query: 287 DRMQKEISALAPPTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIV 108
DRMQKEI+ALAPPTMKIKI+APPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP IV
Sbjct: 312 DRMQKEITALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIV 371
Query: 107 HRKCF 93
HRKCF
Sbjct: 372 HRKCF 376
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,913,160
Number of Sequences: 369166
Number of extensions: 721420
Number of successful extensions: 2046
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2028
length of database: 68,354,980
effective HSP length: 71
effective length of database: 55,238,795
effective search space used: 1712402645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)