Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_D03
(868 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q920L2|DHSA_RAT Succinate dehydrogenase [ubiquinone] fla... 423 e-118
sp|Q8K2B3|DHSA_MOUSE Succinate dehydrogenase [ubiquinone] f... 422 e-118
sp|P31040|DHSA_HUMAN Succinate dehydrogenase [ubiquinone] f... 421 e-117
sp|Q8HXW3|DHSA_MACFA Succinate dehydrogenase [ubiquinone] f... 419 e-117
sp|P31039|DHSA_BOVIN Succinate dehydrogenase [ubiquinone] f... 418 e-116
sp|Q94523|DHSA_DROME Succinate dehydrogenase [ubiquinone] f... 412 e-115
sp|Q09508|DHSA_CAEEL Succinate dehydrogenase [ubiquinone] f... 405 e-113
sp|O82663|DHSA_ARATH Succinate dehydrogenase [ubiquinone] f... 331 1e-90
sp|Q00711|DHSA_YEAST Succinate dehydrogenase [ubiquinone] f... 328 1e-89
sp|P47052|DHSX_YEAST Probable succinate dehydrogenase [ubiq... 318 9e-87
>sp|Q920L2|DHSA_RAT Succinate dehydrogenase [ubiquinone] flavoprotein subunit,
mitochondrial precursor (Fp) (Flavoprotein subunit of
complex II)
Length = 656
Score = 423 bits (1087), Expect = e-118
Identities = 207/289 (71%), Positives = 241/289 (83%)
Frame = +1
Query: 1 PHKDHIYLQLSHLPPELLKQRLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGIPTNYK 180
P KDH+YLQL HLPPE L RLPGISETAMIFAGVDVT+EPIPVLPTVHYNMGGIPTNYK
Sbjct: 351 PEKDHVYLQLHHLPPEQLATRLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGIPTNYK 410
Query: 181 GQVITYDENTKRDKIVKGLYAAGEAACTSVHGANRLGANSLLDIVVFGRACALTIAEENK 360
GQV+ + +D+IV GLYA GEAAC SVHGANRLGANSLLD+VVFGRACAL+IAE +
Sbjct: 411 GQVLKHVNG--QDQIVPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALSIAESCR 468
Query: 361 PGESQPDLPKNAGEASIANLDKLRNANGSLSTAEVRLKMQKTMQEHAAVFREGSVLKEGC 540
PG+ P + NAGE S+ NLDKLR A+GS+ T+E+RL MQK+MQ HAAVFR GSVL+EGC
Sbjct: 469 PGDKVPPIKANAGEESVMNLDKLRFADGSVRTSELRLSMQKSMQSHAAVFRVGSVLQEGC 528
Query: 541 KKVLDIYQNDMTKLKLFDRSMIWNSDLVEALELQNLMLNSLQTIYGAENRKESRGAHSRE 720
+KV +Y D+ LK FDR M+WN+DLVE LELQNLML +LQTIYGAE RKESRGAH+RE
Sbjct: 529 EKVSQLY-GDLQHLKTFDRGMVWNTDLVETLELQNLMLCALQTIYGAEARKESRGAHARE 587
Query: 721 DFKTRIDEYDYSKPLEGQTKKPIEQHWRKHSLLFQNVETGEVKISYRPV 867
D+K RIDEYDYSKP+EGQ KKP +HWRKH+L + + +TG+V + YRPV
Sbjct: 588 DYKVRIDEYDYSKPIEGQQKKPFAEHWRKHTLSYVDTKTGKVTLDYRPV 636
>sp|Q8K2B3|DHSA_MOUSE Succinate dehydrogenase [ubiquinone] flavoprotein subunit,
mitochondrial precursor (Fp) (Flavoprotein subunit of
complex II)
Length = 664
Score = 422 bits (1086), Expect = e-118
Identities = 204/289 (70%), Positives = 242/289 (83%)
Frame = +1
Query: 1 PHKDHIYLQLSHLPPELLKQRLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGIPTNYK 180
P KDH+YLQL HLPPE L RLPGISETAMIFAGVDVT+EPIPVLPTVHYNMGGIPTNYK
Sbjct: 359 PEKDHVYLQLHHLPPEQLATRLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGIPTNYK 418
Query: 181 GQVITYDENTKRDKIVKGLYAAGEAACTSVHGANRLGANSLLDIVVFGRACALTIAEENK 360
GQV+ + +D+IV GLYA GEAAC SVHGANRLGANSLLD+VVFGRACAL+IAE +
Sbjct: 419 GQVLKHVNG--QDQIVPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALSIAESCR 476
Query: 361 PGESQPDLPKNAGEASIANLDKLRNANGSLSTAEVRLKMQKTMQEHAAVFREGSVLKEGC 540
PG+ P + NAGE S+ NLDKLR A+GS+ T+E+RL MQK+MQ HAAVFR GSVL+EGC
Sbjct: 477 PGDKVPSIKANAGEESVMNLDKLRFADGSIRTSELRLNMQKSMQNHAAVFRVGSVLQEGC 536
Query: 541 KKVLDIYQNDMTKLKLFDRSMIWNSDLVEALELQNLMLNSLQTIYGAENRKESRGAHSRE 720
+K+ +Y D+ LK FDR M+WN+DLVE LELQNLML +LQTIYGAE RKESRGAH+RE
Sbjct: 537 EKISQLY-GDLKHLKTFDRGMVWNTDLVETLELQNLMLCALQTIYGAEARKESRGAHARE 595
Query: 721 DFKTRIDEYDYSKPLEGQTKKPIEQHWRKHSLLFQNVETGEVKISYRPV 867
D+K R+DEYDYSKP++GQ KKP +HWRKH+L + +++TG+V + YRPV
Sbjct: 596 DYKVRVDEYDYSKPIQGQQKKPFGEHWRKHTLSYVDIKTGKVTLEYRPV 644
>sp|P31040|DHSA_HUMAN Succinate dehydrogenase [ubiquinone] flavoprotein subunit,
mitochondrial precursor (Fp) (Flavoprotein subunit of
complex II)
Length = 664
Score = 421 bits (1082), Expect = e-117
Identities = 206/289 (71%), Positives = 240/289 (83%)
Frame = +1
Query: 1 PHKDHIYLQLSHLPPELLKQRLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGIPTNYK 180
P KDH+YLQL HLPPE L RLPGISETAMIFAGVDVT+EPIPVLPTVHYNMGGIPTNYK
Sbjct: 359 PEKDHVYLQLHHLPPEQLATRLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGIPTNYK 418
Query: 181 GQVITYDENTKRDKIVKGLYAAGEAACTSVHGANRLGANSLLDIVVFGRACALTIAEENK 360
GQV+ + +D+IV GLYA GEAAC SVHGANRLGANSLLD+VVFGRACAL+I E +
Sbjct: 419 GQVLRHVNG--QDQIVPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALSIEESCR 476
Query: 361 PGESQPDLPKNAGEASIANLDKLRNANGSLSTAEVRLKMQKTMQEHAAVFREGSVLKEGC 540
PG+ P + NAGE S+ NLDKLR A+GS+ T+E+RL MQK+MQ HAAVFR GSVL+EGC
Sbjct: 477 PGDKVPPIKPNAGEESVMNLDKLRFADGSIRTSELRLSMQKSMQNHAAVFRVGSVLQEGC 536
Query: 541 KKVLDIYQNDMTKLKLFDRSMIWNSDLVEALELQNLMLNSLQTIYGAENRKESRGAHSRE 720
K+ +Y D+ LK FDR M+WN+DLVE LELQNLML +LQTIYGAE RKESRGAH+RE
Sbjct: 537 GKISKLY-GDLKHLKTFDRGMVWNTDLVETLELQNLMLCALQTIYGAEARKESRGAHARE 595
Query: 721 DFKTRIDEYDYSKPLEGQTKKPIEQHWRKHSLLFQNVETGEVKISYRPV 867
D+K RIDEYDYSKP++GQ KKP E+HWRKH+L + +V TG+V + YRPV
Sbjct: 596 DYKVRIDEYDYSKPIQGQQKKPFEEHWRKHTLSYVDVGTGKVTLEYRPV 644
>sp|Q8HXW3|DHSA_MACFA Succinate dehydrogenase [ubiquinone] flavoprotein subunit,
mitochondrial precursor (Fp) (Flavoprotein subunit of
complex II)
Length = 664
Score = 419 bits (1078), Expect = e-117
Identities = 205/289 (70%), Positives = 239/289 (82%)
Frame = +1
Query: 1 PHKDHIYLQLSHLPPELLKQRLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGIPTNYK 180
P KDH+YLQL HLPPE L RLPGISETAMIFAGVDVT+EPIPVLPTVHYNMGGIPTNYK
Sbjct: 359 PEKDHVYLQLHHLPPEQLATRLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGIPTNYK 418
Query: 181 GQVITYDENTKRDKIVKGLYAAGEAACTSVHGANRLGANSLLDIVVFGRACALTIAEENK 360
GQV+ + +D+IV GLYA GEAAC SVHGANRLGANSL D+VVFGRACAL+I E +
Sbjct: 419 GQVLRHVNG--QDQIVPGLYACGEAACASVHGANRLGANSLWDLVVFGRACALSIEESCR 476
Query: 361 PGESQPDLPKNAGEASIANLDKLRNANGSLSTAEVRLKMQKTMQEHAAVFREGSVLKEGC 540
PG+ P + NAGE S+ NLDKLR A+GS+ T+E+RL MQK+MQ HAAVFR GSVL+EGC
Sbjct: 477 PGDKVPPIKPNAGEESVMNLDKLRFADGSIRTSELRLSMQKSMQNHAAVFRVGSVLQEGC 536
Query: 541 KKVLDIYQNDMTKLKLFDRSMIWNSDLVEALELQNLMLNSLQTIYGAENRKESRGAHSRE 720
K+ +Y D+ LK FDR M+WN+DLVE LELQNLML +LQTIYGAE RKESRGAH+RE
Sbjct: 537 GKISKLY-GDLKHLKTFDRGMVWNTDLVETLELQNLMLCALQTIYGAEARKESRGAHARE 595
Query: 721 DFKTRIDEYDYSKPLEGQTKKPIEQHWRKHSLLFQNVETGEVKISYRPV 867
D+K RIDEYDYSKP++GQ KKP E+HWRKH+L + +V TG+V + YRPV
Sbjct: 596 DYKARIDEYDYSKPIQGQQKKPFEEHWRKHTLSYVDVSTGKVTLEYRPV 644
>sp|P31039|DHSA_BOVIN Succinate dehydrogenase [ubiquinone] flavoprotein subunit,
mitochondrial precursor (Fp) (Flavoprotein subunit of
complex II)
Length = 665
Score = 418 bits (1074), Expect = e-116
Identities = 204/289 (70%), Positives = 238/289 (82%)
Frame = +1
Query: 1 PHKDHIYLQLSHLPPELLKQRLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGIPTNYK 180
P KDH+YLQL HLPP L RLPGISETAMIFAGVDVT+EPIPVLPTVHYNMGGIPTNYK
Sbjct: 360 PEKDHVYLQLHHLPPAQLAMRLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGIPTNYK 419
Query: 181 GQVITYDENTKRDKIVKGLYAAGEAACTSVHGANRLGANSLLDIVVFGRACALTIAEENK 360
GQV+ + +D+ V GLYA GEAAC SVHGANRLGANSLLD+VVFGRACAL+IAE +
Sbjct: 420 GQVLRHVNG--QDQGVPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALSIAESCR 477
Query: 361 PGESQPDLPKNAGEASIANLDKLRNANGSLSTAEVRLKMQKTMQEHAAVFREGSVLKEGC 540
PG+ P + NAGE S+ NLDKLR ANGS+ T+E+RL MQK+MQ HAAVFR GSVL+EGC
Sbjct: 478 PGDKVPSIKPNAGEESVMNLDKLRFANGSIRTSELRLNMQKSMQSHAAVFRVGSVLQEGC 537
Query: 541 KKVLDIYQNDMTKLKLFDRSMIWNSDLVEALELQNLMLNSLQTIYGAENRKESRGAHSRE 720
+K+ +Y D+ LK FDR M+WN+DLVE LELQNLML +LQTIYGAE RKESRG RE
Sbjct: 538 EKISSLY-GDLRHLKTFDRGMVWNTDLVETLELQNLMLCALQTIYGAEARKESRGGPRRE 596
Query: 721 DFKTRIDEYDYSKPLEGQTKKPIEQHWRKHSLLFQNVETGEVKISYRPV 867
DFK R+DEYDYSKP++GQ KKP EQHWRKH+L + +++TG+V + YRPV
Sbjct: 597 DFKERVDEYDYSKPIQGQQKKPFEQHWRKHTLSYVDIKTGKVTLEYRPV 645
>sp|Q94523|DHSA_DROME Succinate dehydrogenase [ubiquinone] flavoprotein subunit,
mitochondrial precursor (FP) (Flavoprotein subunit of
complex II)
Length = 661
Score = 412 bits (1059), Expect = e-115
Identities = 203/289 (70%), Positives = 242/289 (83%)
Frame = +1
Query: 1 PHKDHIYLQLSHLPPELLKQRLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGIPTNYK 180
P KDH+YLQL HLPP+ L +RLPGISETAMIFAGVDVTREPIPVLPTVHYNMGG+PTNY+
Sbjct: 356 PEKDHVYLQLHHLPPKQLAERLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGVPTNYR 415
Query: 181 GQVITYDENTKRDKIVKGLYAAGEAACTSVHGANRLGANSLLDIVVFGRACALTIAEENK 360
GQVIT D++ K D IV GLYAAGEAA +SVHGANRLGANSLLD+VVFGRACA TIAE NK
Sbjct: 416 GQVITIDKDGK-DVIVPGLYAAGEAASSSVHGANRLGANSLLDLVVFGRACAKTIAELNK 474
Query: 361 PGESQPDLPKNAGEASIANLDKLRNANGSLSTAEVRLKMQKTMQEHAAVFREGSVLKEGC 540
PG P L +NAGEAS+ANLDKLR+ANG ++TA++RLKMQKTMQ HAAVFR+G +L++G
Sbjct: 475 PGAPAPTLKENAGEASVANLDKLRHANGQITTADLRLKMQKTMQHHAAVFRDGPILQDGV 534
Query: 541 KKVLDIYQNDMTKLKLFDRSMIWNSDLVEALELQNLMLNSLQTIYGAENRKESRGAHSRE 720
K+ +IY+ +K+ DRS+IWNSDLVE LELQNL+ N+ TI AE RKESRGAH+RE
Sbjct: 535 NKMKEIYK-QFKDIKVVDRSLIWNSDLVETLELQNLLANAQMTIVSAEARKESRGAHARE 593
Query: 721 DFKTRIDEYDYSKPLEGQTKKPIEQHWRKHSLLFQNVETGEVKISYRPV 867
DFK R DEYD+SKPL+GQ KKP++QHWRKH+L + + G++ + YR V
Sbjct: 594 DFKVREDEYDFSKPLDGQQKKPMDQHWRKHTLSWVCNDNGDITLDYRNV 642
>sp|Q09508|DHSA_CAEEL Succinate dehydrogenase [ubiquinone] flavoprotein subunit,
mitochondrial precursor (FP) (Flavoprotein subunit of
complex II)
Length = 646
Score = 405 bits (1042), Expect = e-113
Identities = 194/289 (67%), Positives = 234/289 (80%)
Frame = +1
Query: 1 PHKDHIYLQLSHLPPELLKQRLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGIPTNYK 180
P KDHIYLQL HLP E L+QRLPGISETAMIFAGVDVT+EPIPV+PTVHYNMGG+PTNYK
Sbjct: 340 PDKDHIYLQLHHLPAEQLQQRLPGISETAMIFAGVDVTKEPIPVIPTVHYNMGGVPTNYK 399
Query: 181 GQVITYDENTKRDKIVKGLYAAGEAACTSVHGANRLGANSLLDIVVFGRACALTIAEENK 360
GQV+ Y K D++V GLYAAGE SVHGANRLGANSLLD+V+FGRACA+ I +
Sbjct: 400 GQVLNYTPK-KGDEVVPGLYAAGECGAHSVHGANRLGANSLLDLVIFGRACAIDILKNTS 458
Query: 361 PGESQPDLPKNAGEASIANLDKLRNANGSLSTAEVRLKMQKTMQEHAAVFREGSVLKEGC 540
G P+LPKNAGEAS+AN+DKLR+ G +STAE+RL MQK+MQ HAAVFR G +LKEG
Sbjct: 459 AGVGVPELPKNAGEASVANIDKLRHNKGDISTAELRLTMQKSMQNHAAVFRRGDILKEGV 518
Query: 541 KKVLDIYQNDMTKLKLFDRSMIWNSDLVEALELQNLMLNSLQTIYGAENRKESRGAHSRE 720
K + +Y+ D L + D+ ++WNSDL+E LELQNL++N+ QTI AENR+ESRGAH+R+
Sbjct: 519 KVLSKLYK-DQAHLNVADKGLVWNSDLIETLELQNLLINATQTIVAAENREESRGAHARD 577
Query: 721 DFKTRIDEYDYSKPLEGQTKKPIEQHWRKHSLLFQNVETGEVKISYRPV 867
DF R+DE DYSKPLEGQTKK ++ HWRKHS++ N+ETGEV + YRPV
Sbjct: 578 DFPDRLDELDYSKPLEGQTKKELKDHWRKHSIIRSNIETGEVSLDYRPV 626
>sp|O82663|DHSA_ARATH Succinate dehydrogenase [ubiquinone] flavoprotein subunit,
mitochondrial (FP) (Flavoprotein subunit of complex II)
Length = 634
Score = 331 bits (849), Expect = 1e-90
Identities = 174/289 (60%), Positives = 213/289 (73%)
Frame = +1
Query: 1 PHKDHIYLQLSHLPPELLKQRLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGIPTNYK 180
PHKDHIYL L+HLPPE+LK+RLPGISETA IFAGVDVT+EPIPVLPTVHYNMGGIPTNY
Sbjct: 348 PHKDHIYLHLNHLPPEVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNYH 407
Query: 181 GQVITYDENTKRDKIVKGLYAAGEAACTSVHGANRLGANSLLDIVVFGRACALTIAEENK 360
G+V+T + D ++ GL AAGEAAC SVHGANRLGANSLLDIVVFGRACA +AE +K
Sbjct: 408 GEVVTI-KGDDPDAVIPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEISK 466
Query: 361 PGESQPDLPKNAGEASIANLDKLRNANGSLSTAEVRLKMQKTMQEHAAVFREGSVLKEGC 540
PGE Q L K+AGE +IA LD+LRN+NGSL T+ +RL MQ+ MQ +AAVFR L+EGC
Sbjct: 467 PGEKQKPLEKDAGEKTIAWLDRLRNSNGSLPTSTIRLNMQRIMQNNAAVFRTQETLEEGC 526
Query: 541 KKVLDIYQNDMTKLKLFDRSMIWNSDLVEALELQNLMLNSLQTIYGAENRKESRGAHSRE 720
+++D +++ DRSMIWNSDL+E LEL+NL++N+ T++ AE RKESRGAH+RE
Sbjct: 527 -QLIDKAWESFGDVQVKDRSMIWNSDLIETLELENLLINASITMHSAEARKESRGAHARE 585
Query: 721 DFKTRIDEYDYSKPLEGQTKKPIEQHWRKHSLLFQNVETGEVKISYRPV 867
DF R D W KH+L + E +V++ YRPV
Sbjct: 586 DFTKRED-----------------GEWMKHTLGYW--EDEKVRLDYRPV 615
>sp|Q00711|DHSA_YEAST Succinate dehydrogenase [ubiquinone] flavoprotein subunit,
mitochondrial precursor (FP) (Flavoprotein subunit of
complex II)
Length = 640
Score = 328 bits (841), Expect = 1e-89
Identities = 169/287 (58%), Positives = 204/287 (71%)
Frame = +1
Query: 7 KDHIYLQLSHLPPELLKQRLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGIPTNYKGQ 186
KDH+YLQLSHLPPE+LK+RLPGISETA IFAGVDVT+EPIP++PTVHYNMGGIPT + G+
Sbjct: 352 KDHMYLQLSHLPPEVLKERLPGISETAAIFAGVDVTKEPIPIIPTVHYNMGGIPTKWNGE 411
Query: 187 VITYDENTKRDKIVKGLYAAGEAACTSVHGANRLGANSLLDIVVFGRACALTIAEENKPG 366
+T DE T DK++ GL A GEAAC SVHGANRLGANSLLD+VVFGRA A T+A+ +PG
Sbjct: 412 ALTIDEETGEDKVIPGLMACGEAACVSVHGANRLGANSLLDLVVFGRAVAHTVADTLQPG 471
Query: 367 ESQPDLPKNAGEASIANLDKLRNANGSLSTAEVRLKMQKTMQEHAAVFREGSVLKEGCKK 546
LP + G+ SIANLDKLRNANGS STAE+R+ M++TMQ+ +VFR S L EG +
Sbjct: 472 LPHKPLPSDLGKESIANLDKLRNANGSRSTAEIRMNMKQTMQKDVSVFRTQSSLDEGVRN 531
Query: 547 VLDIYQNDMTKLKLFDRSMIWNSDLVEALELQNLMLNSLQTIYGAENRKESRGAHSREDF 726
+ + + +K DRSMIWNSDLVE LELQNL+ + QT A NRKESRGAH+RED+
Sbjct: 532 ITAV-EKTFDDVKTTDRSMIWNSDLVETLELQNLLTCASQTAVSAANRKESRGAHAREDY 590
Query: 727 KTRIDEYDYSKPLEGQTKKPIEQHWRKHSLLFQNVETGEVKISYRPV 867
R DE HW KH+L +Q V + YR V
Sbjct: 591 PNRDDE-----------------HWMKHTLSWQKDVAAPVTLKYRRV 620
>sp|P47052|DHSX_YEAST Probable succinate dehydrogenase [ubiquinone] flavoprotein subunit 2,
mitochondrial precursor (FP) (Flavoprotein subunit of
complex II)
Length = 634
Score = 318 bits (816), Expect = 9e-87
Identities = 166/288 (57%), Positives = 201/288 (69%)
Frame = +1
Query: 4 HKDHIYLQLSHLPPELLKQRLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGIPTNYKG 183
+KDHI LQLSHLPPE+LK+RLPGISETA +FAGVDVT+EPIPVLPTVHYNMGGIPT + G
Sbjct: 345 NKDHILLQLSHLPPEVLKERLPGISETAAVFAGVDVTQEPIPVLPTVHYNMGGIPTKWTG 404
Query: 184 QVITYDENTKRDKIVKGLYAAGEAACTSVHGANRLGANSLLDIVVFGRACALTIAEENKP 363
+ +T DE T DK++ GL A GEAAC SVHGANRLGANSLLD+VVFGRA A TIA+ +P
Sbjct: 405 EALTIDEETGEDKVIPGLMACGEAACVSVHGANRLGANSLLDLVVFGRAVANTIADTLQP 464
Query: 364 GESQPDLPKNAGEASIANLDKLRNANGSLSTAEVRLKMQKTMQEHAAVFREGSVLKEGCK 543
G L N G SIANLDK+RNA GSL T+++RL MQ+TMQ+ +VFR L EG +
Sbjct: 465 GLPHKPLASNIGHESIANLDKVRNARGSLKTSQIRLNMQRTMQKDVSVFRTQDTLDEGVR 524
Query: 544 KVLDIYQNDMTKLKLFDRSMIWNSDLVEALELQNLMLNSLQTIYGAENRKESRGAHSRED 723
+ ++ + + D+SMIWNSDLVE LELQNL+ + QT A RKESRGAH+RED
Sbjct: 525 NITEV-DKTFEDVHVSDKSMIWNSDLVETLELQNLLTCATQTAVSASKRKESRGAHARED 583
Query: 724 FKTRIDEYDYSKPLEGQTKKPIEQHWRKHSLLFQNVETGEVKISYRPV 867
+ R D +WRKH+L +Q + VKI YR V
Sbjct: 584 YAKRDD-----------------VNWRKHTLSWQKGTSTPVKIKYRNV 614
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.315 0.133 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,164,767
Number of Sequences: 369166
Number of extensions: 2083209
Number of successful extensions: 4338
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4206
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8550075140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)