Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_C15
(647 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P41750|PGLRB_ASPFL Polygalacturonase B precursor (Pectin... 36 0.098
sp|Q9HBT6|CAD20_HUMAN Cadherin-20 precursor 33 0.83
sp|O14188|RNG2_SCHPO Ras GTPase-activating-like protein rng... 32 1.1
sp|Q8CGK7|GNAL_MOUSE Guanine nucleotide-binding protein G(o... 31 3.2
sp|P38405|GNAL_HUMAN Guanine nucleotide-binding protein G(o... 31 3.2
sp|P0A257|PLSC_SALTY 1-acyl-sn-glycerol-3-phosphate acyltra... 31 3.2
sp|P26647|PLSC_ECOLI 1-acyl-sn-glycerol-3-phosphate acyltra... 31 3.2
sp|P38406|GNAL_RAT Guanine nucleotide-binding protein G(olf... 31 3.2
sp|Q89AP0|UPPS_BUCBP Undecaprenyl pyrophosphate synthetase ... 31 3.2
sp|Q24451|MAN2_DROME Alpha-mannosidase II (Mannosyl-oligosa... 30 4.1
>sp|P41750|PGLRB_ASPFL Polygalacturonase B precursor (Pectinase) (PGL) (P1/P3)
Length = 366
Score = 35.8 bits (81), Expect = 0.098
Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 12/80 (15%)
Frame = +1
Query: 187 KRKPRYLTYWPNMRLRKNPIT---VNNYAVDT-SIQNNPVHV--------DGDNGGRHRV 330
K KP+++ Y +L IT V N V S+Q N VH+ DGDN G H
Sbjct: 127 KTKPKFIQY---PQLESPTITGLHVKNSPVQVFSVQGNDVHLTDITIDNSDGDNNGGHNT 183
Query: 331 VSFDVTSEPTVAISGQGHAN 390
+FDV+ V I+G N
Sbjct: 184 DAFDVSESNGVYITGANVKN 203
>sp|Q9HBT6|CAD20_HUMAN Cadherin-20 precursor
Length = 801
Score = 32.7 bits (73), Expect = 0.83
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Frame = +1
Query: 139 VVVMGCIFVIIYYIVVKRKPRYLTYWPNMRLRKNPITVNNYAVDTSIQNNPVHVDGDNGG 318
+ ++ CIFV++ +++ R R RK P +++ + +I N V D + GG
Sbjct: 623 IAILACIFVLLVLVLLILSMR--------RHRKQPYIIDD---EENIHENIVRYDDEGGG 671
Query: 319 RHRVVSFDVTS--EPTVAISGQG 381
+FD+ + P A +G G
Sbjct: 672 EEDTEAFDIAAMWNpreAQAGAG 694
>sp|O14188|RNG2_SCHPO Ras GTPase-activating-like protein rng2 (Ring assembly protein 2)
Length = 1489
Score = 32.3 bits (72), Expect = 1.1
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = -2
Query: 622 LFVNSHLLLKSKSDAGKSSHKIISTITNVYQYSPIFPTPNSNKKNKTLRLKFIKNREHN 446
LF S +L++S + + H I++ + N+Y Y P+F N+ LR +N N
Sbjct: 447 LFTPSFVLIQSSALGFLTRHAIVNMLDNLYNYIPLF-----NRMQSILRANMFRNEWSN 500
>sp|Q8CGK7|GNAL_MOUSE Guanine nucleotide-binding protein G(olf), alpha subunit (Adenylate
cyclase-stimulating G alpha protein, olfactory type)
Length = 381
Score = 30.8 bits (68), Expect = 3.2
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = -2
Query: 646 WVRPLEFFLFVNSHLLLKSKSDAGKSSHKIISTITNVYQYS-PIFPTPNSNKKNKTLRLK 470
W+R + LF+N +L K AGKS KI Y+ P TP++ + K R K
Sbjct: 268 WLRTISIILFLNKQDMLAEKVLAGKS--KIEDYFPEYANYTVPEDATPDAGEDPKVTRAK 325
Query: 469 F 467
F
Sbjct: 326 F 326
>sp|P38405|GNAL_HUMAN Guanine nucleotide-binding protein G(olf), alpha subunit (Adenylate
cyclase-stimulating G alpha protein, olfactory type)
Length = 381
Score = 30.8 bits (68), Expect = 3.2
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = -2
Query: 646 WVRPLEFFLFVNSHLLLKSKSDAGKSSHKIISTITNVYQYS-PIFPTPNSNKKNKTLRLK 470
W+R + LF+N +L K AGKS KI Y+ P TP++ + K R K
Sbjct: 268 WLRTISIILFLNKQDMLAEKVLAGKS--KIEDYFPEYANYTVPEDATPDAGEDPKVTRAK 325
Query: 469 F 467
F
Sbjct: 326 F 326
>sp|P0A257|PLSC_SALTY 1-acyl-sn-glycerol-3-phosphate acyltransferase (1-AGP
acyltransferase) (1-AGPAT) (Lysophosphatidic acid
acyltransferase) (LPAAT)
sp|P0A258|PLSC_SALTI 1-acyl-sn-glycerol-3-phosphate acyltransferase (1-AGP
acyltransferase) (1-AGPAT) (Lysophosphatidic acid
acyltransferase) (LPAAT)
Length = 245
Score = 30.8 bits (68), Expect = 3.2
Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 4/91 (4%)
Frame = +1
Query: 109 YIIFLIVLSAVVVMGCIFVIIYYIVVKRKPRYLTYWPNMRLRKNPI----TVNNYAVDTS 276
YI LIV ++ C+F IY + R P+++ + +M R P+ D
Sbjct: 3 YIFRLIVTVIYSILVCVFGSIYCLFSPRNPKHVATFGHMFGRLAPLFGLKVECRKPADAE 62
Query: 277 IQNNPVHVDGDNGGRHRVVSFDVTSEPTVAI 369
N +++ V + ++ PTV +
Sbjct: 63 NYGNAIYIANHQNNYDMVTAANIVQPPTVTV 93
>sp|P26647|PLSC_ECOLI 1-acyl-sn-glycerol-3-phosphate acyltransferase (1-AGP
acyltransferase) (1-AGPAT) (Lysophosphatidic acid
acyltransferase) (LPAAT)
Length = 245
Score = 30.8 bits (68), Expect = 3.2
Identities = 19/91 (20%), Positives = 37/91 (40%), Gaps = 4/91 (4%)
Frame = +1
Query: 109 YIIFLIVLSAVVVMGCIFVIIYYIVVKRKPRYLTYWPNMRLRKNPI----TVNNYAVDTS 276
YI LI+ ++ C+F IY + R P+++ + +M R P+ D
Sbjct: 3 YIFRLIITVIYSILVCVFGSIYCLFSPRNPKHVATFGHMFGRLAPLFGLKVECRKPTDAE 62
Query: 277 IQNNPVHVDGDNGGRHRVVSFDVTSEPTVAI 369
N +++ V + ++ PTV +
Sbjct: 63 SYGNAIYIANHQNNYDMVTASNIVQPPTVTV 93
>sp|P38406|GNAL_RAT Guanine nucleotide-binding protein G(olf), alpha subunit (Adenylate
cyclase-stimulating G alpha protein, olfactory type)
Length = 381
Score = 30.8 bits (68), Expect = 3.2
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = -2
Query: 646 WVRPLEFFLFVNSHLLLKSKSDAGKSSHKIISTITNVYQYS-PIFPTPNSNKKNKTLRLK 470
W+R + LF+N +L K AGKS KI Y+ P TP++ + K R K
Sbjct: 268 WLRTISIILFLNKQDMLAEKVLAGKS--KIEDYFPEYANYTVPEDATPDAGEDPKVTRAK 325
Query: 469 F 467
F
Sbjct: 326 F 326
>sp|Q89AP0|UPPS_BUCBP Undecaprenyl pyrophosphate synthetase (UPP synthetase)
(Di-trans,poly-cis-decaprenylcistransferase)
(Undecaprenyl diphosphate synthase) (UDS)
Length = 251
Score = 30.8 bits (68), Expect = 3.2
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Frame = -2
Query: 640 RPLEFFLFVNSHLLL--KSKSDAGKSSHKIISTITNVYQYSPIFPTPNSNKKNKTLRLKF 467
R + F LF +L SD S + I + ++ Y+ T N NK N +RLK
Sbjct: 55 RAISFALFHKLKILTLYAFSSDNWNRSpreIKVLMELFFYALSNETNNLNKYN--IRLKV 112
Query: 466 IKNREHNKRIIKNNLH*ILKYDMR 395
I N+E ++KN + + K ++
Sbjct: 113 IGNKEKFNTVLKNKIRVVEKETLK 136
>sp|Q24451|MAN2_DROME Alpha-mannosidase II (Mannosyl-oligosaccharide
1,3-1,6-alpha-mannosidase) (MAN II) (Golgi
alpha-mannosidase II) (AMAN II)
Length = 1108
Score = 30.4 bits (67), Expect = 4.1
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +1
Query: 193 KPRYLTYWPNMRLRKNP--ITVNNYAVDTSIQNNPVHVDGDNGGRHRVVSFDVTSEPTVA 366
KP + +Y N+ LRKNP + + Y D G R +S V + PT+A
Sbjct: 703 KPEHTSYASNLLLRKNPTSLPLGQYPEDVKF------------GDpreISLRVGNGPTLA 750
Query: 367 ISGQG 381
S QG
Sbjct: 751 FSEQG 755
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,623,392
Number of Sequences: 369166
Number of extensions: 1331952
Number of successful extensions: 3677
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3674
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5316264630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)