Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_C14
(872 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q00400|DTH1_DUGTI Homeobox protein DTH-1 35 0.21
sp|P32908|SMC1_YEAST Structural maintenance of chromosome 1... 35 0.27
sp|Q99N50|SYTL2_MOUSE Synaptotagmin-like protein 2 (Exophil... 34 0.46
sp|Q8DHW6|SYC_SYNEL Cysteinyl-tRNA synthetase (Cysteine--tR... 34 0.61
sp|Q03714|USA1_YEAST U1 SNP1-associating protein 1 33 0.79
sp|Q96YR5|RAD50_SULTO DNA double-strand break repair rad50 ... 33 0.79
sp|P51816|AFF2_HUMAN AF4/FMR2 family member 2 (Fragile X me... 33 1.0
sp|Q9HCH5|SYTL2_HUMAN Synaptotagmin-like protein 2 (Exophil... 33 1.0
sp|Q09958|EBP2_CAEEL Probable rRNA processing protein EBP2 ... 32 1.8
sp|P46954|SIP4_YEAST SIP4 protein 32 2.3
>sp|Q00400|DTH1_DUGTI Homeobox protein DTH-1
Length = 533
Score = 35.4 bits (80), Expect = 0.21
Identities = 51/204 (25%), Positives = 81/204 (39%), Gaps = 19/204 (9%)
Frame = +3
Query: 3 YKLFNVCIKTLSNAKFLNTSVYIYTNRILYRSNILKGTDKNNSEDSNEIINLSNDSMSLN 182
YKL IKT+SN + + L RS N D I NL N
Sbjct: 265 YKLSLPEIKTISNDWIKGSQNVNFNQNQLLRST--------NVSDYTLIKNLPQ-----N 311
Query: 183 IPKVNSVDLQKFDFENESFQVAVNERSTI---DLSSSMHANLPKPPSEAVEINDRPYDSI 353
+P N D NE+ Q N S + S +H N + +VE ND S
Sbjct: 312 LPNPNQTDSIYSSSINENNQPIRNYDSPNPDREDDSEIHENPNPHDTSSVENNDNENSSS 371
Query: 354 VSLGEKYQKNDKFFSEELLD------------AVKKDNITHLQHLLSEERKLWLYFSNE- 494
+G+K ++ F +++L+ A +++++ +L L + K+W F N
Sbjct: 372 GDIGKKRKRRVLFSKKQILELERHFRQKKYLSAPEREHLANLIGLSPTQVKIW--FQNHR 429
Query: 495 ---KRFNIKISADAADLISQRRLN 557
KR + + + + +L RRLN
Sbjct: 430 YKMKRAHHEKALEMGNLAVNRRLN 453
>sp|P32908|SMC1_YEAST Structural maintenance of chromosome 1 (DA-box protein SMC1)
Length = 1225
Score = 35.0 bits (79), Expect = 0.27
Identities = 45/192 (23%), Positives = 79/192 (41%), Gaps = 2/192 (1%)
Frame = +3
Query: 3 YKLFNVCIKTLS--NAKFLNTSVYIYTNRILYRSNILKGTDKNNSEDSNEIINLSNDSMS 176
+KL +KT + + K+L I +I +N DK ++ E N D
Sbjct: 378 FKLNENDLKTYNCLHEKYLTEGGSILEEKIAVLNN-----DKREIQEELERFNKRADISK 432
Query: 177 LNIPKVNSVDLQKFDFENESFQVAVNERSTIDLSSSMHANLPKPPSEAVEINDRPYDSIV 356
I + S+ +K D + +V++NE++ + + +H L K S+ N++ YD
Sbjct: 433 RRITEELSITGEKLDTQLNDLRVSLNEKNALH-TERLH-ELKKLQSDIESANNQEYDLNF 490
Query: 357 SLGEKYQKNDKFFSEELLDAVKKDNITHLQHLLSEERKLWLYFSNEKRFNIKISADAADL 536
L E VK D+++ Q +ERKL + KRF + DL
Sbjct: 491 KLRETL--------------VKIDDLSANQRETMKERKLRENIAMLKRFFPGVKGLVHDL 536
Query: 537 ISQRRLNAGIAL 572
++ G+A+
Sbjct: 537 CHPKKEKYGLAV 548
>sp|Q99N50|SYTL2_MOUSE Synaptotagmin-like protein 2 (Exophilin-4)
Length = 950
Score = 34.3 bits (77), Expect = 0.46
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Frame = +3
Query: 408 LDAVKKDNITHLQHLLSEERKL------WLYFSNEKRFNIKISADAADLI--SQRRLNAG 563
L +++ + HL + ++++L W Y + KR KI AD+I S RR
Sbjct: 25 LKRAEEERVRHLPEKIKDDQQLKNMSGQWFYEAKAKRHRDKIHG--ADIIRASMRRKKLP 82
Query: 564 IALEYQYDIMKQVTEYWLNNI 626
A E D + E W+NN+
Sbjct: 83 AAAEQNKDTAMRAKESWVNNV 103
>sp|Q8DHW6|SYC_SYNEL Cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) (CysRS)
Length = 486
Score = 33.9 bits (76), Expect = 0.61
Identities = 28/126 (22%), Positives = 51/126 (40%)
Frame = +3
Query: 165 DSMSLNIPKVNSVDLQKFDFENESFQVAVNERSTIDLSSSMHANLPKPPSEAVEINDRPY 344
D M+L + + + + DF E+ A T+ + +H +P PP +A E+ P
Sbjct: 294 DPMALRLLVLQAQYRKPLDFTPEALTAAAKGWQTLGEALHLHQQIPLPPIDAAEVRSHP- 352
Query: 345 DSIVSLGEKYQKNDKFFSEELLDAVKKDNITHLQHLLSEERKLWLYFSNEKRFNIKISAD 524
K + + E+L A I L L+ E+ +L+ R ++S D
Sbjct: 353 --------KTEAFCQAMDEDLNTAAALAVIFELAKTLNREQHRYLHGGGWGRSPAEVSRD 404
Query: 525 AADLIS 542
L++
Sbjct: 405 WHTLVT 410
>sp|Q03714|USA1_YEAST U1 SNP1-associating protein 1
Length = 838
Score = 33.5 bits (75), Expect = 0.79
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Frame = +3
Query: 51 LNTSVYIYTNRILYRSNILKGTDKNNSEDSNEIINLSNDSMSLNIPKVNSVDLQKFDFEN 230
+NT Y R L + +LK ++ DSN I L + + P ++ DL+ +D E
Sbjct: 74 INTYFLSYEGRELSATCLLKDITSSSHPDSNHFIRLQLEKRT--SPSGSAFDLE-YDMEG 130
Query: 231 E----SFQVAVNERSTIDLSSSMHANLP 302
E + Q +N S+ + +SM NLP
Sbjct: 131 EFNSMNIQFEINTLSSQRIFNSMEPNLP 158
>sp|Q96YR5|RAD50_SULTO DNA double-strand break repair rad50 ATPase
Length = 879
Score = 33.5 bits (75), Expect = 0.79
Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 2/126 (1%)
Frame = +3
Query: 102 ILKGTDKNNSEDSNEIINLSNDSMSLNIPKVNSVDLQKFDFENESFQVAVNERSTIDLSS 281
ILK DSN I D ++ I ++ S++ K + EN+ Q E+ ++
Sbjct: 156 ILKIDKIEKLRDSNGPIKEVMDKINNKIIELQSLEKYKNESENQKIQ---KEKELENIKR 212
Query: 282 SMHANLPKPPSEAVEINDRPYDSIVSLGEKYQKNDKFFSE--ELLDAVKKDNITHLQHLL 455
+ K E + Y+ IV L E+ +K +K + E LL+ + KD+I+ L+ +
Sbjct: 213 ELEDLNIKEEKER-----KKYEDIVKLNEEEEKKEKRYVELISLLNKL-KDDISELREEV 266
Query: 456 SEERKL 473
+E +L
Sbjct: 267 KDENRL 272
>sp|P51816|AFF2_HUMAN AF4/FMR2 family member 2 (Fragile X mental retardation 2 protein)
(Protein FMR-2) (FMR2P) (Ox19 protein) (Fragile X E
mental retardation syndrome protein)
Length = 1311
Score = 33.1 bits (74), Expect = 1.0
Identities = 26/87 (29%), Positives = 37/87 (42%)
Frame = +3
Query: 72 YTNRILYRSNILKGTDKNNSEDSNEIINLSNDSMSLNIPKVNSVDLQKFDFENESFQVAV 251
YTN+ +N ++ T N E N + N SN + + IPK NSV + SF
Sbjct: 60 YTNKGDALANRVQNTLGNYDEMKNLLTNHSNQNHLVGIPK-NSVPQNPNNKNEPSFFPEQ 118
Query: 252 NERSTIDLSSSMHANLPKPPSEAVEIN 332
R + H + P PP V +N
Sbjct: 119 KNRIIPPHQDNTHPSAPMPPPSVVILN 145
>sp|Q9HCH5|SYTL2_HUMAN Synaptotagmin-like protein 2 (Exophilin-4)
Length = 895
Score = 33.1 bits (74), Expect = 1.0
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Frame = +3
Query: 408 LDAVKKDNITHLQHLLSEERKL------WLYFSNEKRFNIKISADAADLI--SQRRLNAG 563
L +++ + HL + ++++L W Y + KR KI AD+I S R+
Sbjct: 10 LKRAEEERVRHLPEKIKDDQQLKNMSGQWFYEAKAKRHRDKIHG--ADIIRASMRKKRPQ 67
Query: 564 IALEYQYDIMKQVTEYWLNNI 626
IA E D E W+NN+
Sbjct: 68 IAAEQSKDRENGAKESWVNNV 88
>sp|Q09958|EBP2_CAEEL Probable rRNA processing protein EBP2 homolog
Length = 340
Score = 32.3 bits (72), Expect = 1.8
Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 9/120 (7%)
Frame = +3
Query: 294 NLPKPPSEAVEINDRPYDSIVSLGEKYQKNDKFFSEELLDAVKKDNITHLQHL------- 452
N K +AV+I Y +++LG K + +++E K D TH+Q +
Sbjct: 132 NFYKQAEKAVQI---AYPRLLNLGIKVLRPTDYYAE----MAKSD--THMQKVRKRLLGI 182
Query: 453 --LSEERKLWLYFSNEKRFNIKISADAADLISQRRLNAGIALEYQYDIMKQVTEYWLNNI 626
+ E ++ + EK+F +K+ + + + N A++ MKQ E LNN+
Sbjct: 183 QEMKERQEAFRRIREEKKFAVKVQKEVLAAKNTEKKNLAEAVKKHKKGMKQQLEDMLNNV 242
>sp|P46954|SIP4_YEAST SIP4 protein
Length = 829
Score = 32.0 bits (71), Expect = 2.3
Identities = 31/115 (26%), Positives = 60/115 (52%), Gaps = 5/115 (4%)
Frame = +3
Query: 15 NVCIKTLSNAKFLNTSVYIYTNRILYRS--NILKGTDKNNSEDSNEIINLSNDSMSLNIP 188
N+ + SN+ FL+ S Y + N+I + N TD+ +ED +E + S++S+ L IP
Sbjct: 685 NLLQHSSSNSNFLDASPYDF-NKIFMNNFENYDYETDEGYAEDDDEEDSDSDNSLPLEIP 743
Query: 189 KVNSVDLQKFDFENESFQVAVNER---STIDLSSSMHANLPKPPSEAVEINDRPY 344
S + K + S ++++ E +++D ++ + NL P S +V + + Y
Sbjct: 744 FKKSKNKCKNRNKELSQRLSLFENRDSNSVDFNTDTNLNL-NPDSPSVTSSKKKY 797
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,432,106
Number of Sequences: 369166
Number of extensions: 1332481
Number of successful extensions: 4412
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4410
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8646143400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)