Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_C11
(841 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P51644|ARF4_XENLA ADP-ribosylation factor 4 317 3e-86
sp|P51823|ARF_ORYSA ADP-ribosylation factor 315 1e-85
sp|P36397|ARF1_ARATH ADP-ribosylation factor 1 312 8e-85
sp|Q9SRC3|ARF2_ARATH ADP-ribosylation factor 1-like 311 1e-84
sp|P51821|ARF1_CHLRE ADP-ribosylation factor 1 311 1e-84
sp|P84083|ARF5_RAT ADP-ribosylation factor 5 >gi|51316989|s... 311 2e-84
sp|O48920|ARF_VIGUN ADP-ribosylation factor 311 2e-84
sp|O48649|ARF1_SALBA ADP-ribosylation factor 1 310 2e-84
sp|P51822|ARF1_DAUCA ADP-ribosylation factor 1 310 3e-84
sp|P51824|ARF1_SOLTU ADP-ribosylation factor 1 310 4e-84
>sp|P51644|ARF4_XENLA ADP-ribosylation factor 4
Length = 180
Score = 317 bits (811), Expect = 3e-86
Identities = 152/180 (84%), Positives = 166/180 (92%)
Frame = -2
Query: 606 MGLTMSSLFNRLFGKKSMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 427
MGLT+SSLF+RLFGKK MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 426 ISFTVWDVGGQDKIRPLWRHYFQNTQGVIFVIDSNDRERISEAADELHKMLEEDDLRDAV 247
I FTVWDVGGQDKIRPLWRHYFQNTQG+IFV+DSNDRERI EAA+EL KML+ED+LRDAV
Sbjct: 61 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEAAEELQKMLQEDELRDAV 120
Query: 246 ILVFANKQDLPNAMSAAEITDKLRLHNLRGRTWYIQQSCAASGAGLYEGLDWLSNELGKK 67
+LVFANKQDLPNAM+ +E+TDKL L LR RTWY+Q +CA G GLYEGLDWLSNEL K+
Sbjct: 121 LLVFANKQDLPNAMAISEMTDKLTLQTLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 180
>sp|P51823|ARF_ORYSA ADP-ribosylation factor
Length = 181
Score = 315 bits (807), Expect = 1e-85
Identities = 152/180 (84%), Positives = 164/180 (91%)
Frame = -2
Query: 606 MGLTMSSLFNRLFGKKSMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 427
MGLT + LF+RLF KK MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 426 ISFTVWDVGGQDKIRPLWRHYFQNTQGVIFVIDSNDRERISEAADELHKMLEEDDLRDAV 247
ISFTVWDVGGQDKIRPLWRHYFQNTQG+IFV+DSNDRER+ EA DELH+ML ED+LRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAV 120
Query: 246 ILVFANKQDLPNAMSAAEITDKLRLHNLRGRTWYIQQSCAASGAGLYEGLDWLSNELGKK 67
+LVFANKQDLPNAM+AAEITDKL LH+LR R WYIQ +CA SG GLYEGLDWLSN + K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
>sp|P36397|ARF1_ARATH ADP-ribosylation factor 1
Length = 181
Score = 312 bits (799), Expect = 8e-85
Identities = 150/180 (83%), Positives = 163/180 (90%)
Frame = -2
Query: 606 MGLTMSSLFNRLFGKKSMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 427
MGL+ LF+RLF KK MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLSFGKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 426 ISFTVWDVGGQDKIRPLWRHYFQNTQGVIFVIDSNDRERISEAADELHKMLEEDDLRDAV 247
ISFTVWDVGGQDKIRPLWRHYFQNTQG+IFV+DSNDR+R+ EA DELH+ML ED+LRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 246 ILVFANKQDLPNAMSAAEITDKLRLHNLRGRTWYIQQSCAASGAGLYEGLDWLSNELGKK 67
+LVFANKQDLPNAM+AAEITDKL LH+LR R WYIQ +CA SG GLYEGLDWLSN + K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
>sp|Q9SRC3|ARF2_ARATH ADP-ribosylation factor 1-like
Length = 181
Score = 311 bits (798), Expect = 1e-84
Identities = 150/180 (83%), Positives = 164/180 (91%)
Frame = -2
Query: 606 MGLTMSSLFNRLFGKKSMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 427
MGL+ + LF+RLF KK MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLSFAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 426 ISFTVWDVGGQDKIRPLWRHYFQNTQGVIFVIDSNDRERISEAADELHKMLEEDDLRDAV 247
ISFTVWDVGGQDKIRPLWRHYFQNTQG+IFV+DSNDR+R+ EA DELH+ML ED+LRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 246 ILVFANKQDLPNAMSAAEITDKLRLHNLRGRTWYIQQSCAASGAGLYEGLDWLSNELGKK 67
+LVFANKQDLPNAM+AAEITDKL LH+LR R WYIQ +CA SG GLYEGLDWLSN + K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAGK 180
>sp|P51821|ARF1_CHLRE ADP-ribosylation factor 1
Length = 181
Score = 311 bits (798), Expect = 1e-84
Identities = 151/180 (83%), Positives = 162/180 (90%)
Frame = -2
Query: 606 MGLTMSSLFNRLFGKKSMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 427
MGL + +RLFGKK MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLRFTKALSRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 426 ISFTVWDVGGQDKIRPLWRHYFQNTQGVIFVIDSNDRERISEAADELHKMLEEDDLRDAV 247
ISFTVWDVGGQDKIRPLWRHYFQNTQG+IFV+DSNDRER+ EA DELH+ML ED+LRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAV 120
Query: 246 ILVFANKQDLPNAMSAAEITDKLRLHNLRGRTWYIQQSCAASGAGLYEGLDWLSNELGKK 67
+LVFANKQDLPNAM+AAEITDKL LH+LR R WYIQ +CA SG GLYEGLDWLSN L K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNLANK 180
>sp|P84083|ARF5_RAT ADP-ribosylation factor 5
sp|P84084|ARF5_MOUSE ADP-ribosylation factor 5
sp|P84085|ARF5_HUMAN ADP-ribosylation factor 5
Length = 180
Score = 311 bits (796), Expect = 2e-84
Identities = 146/180 (81%), Positives = 166/180 (92%)
Frame = -2
Query: 606 MGLTMSSLFNRLFGKKSMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 427
MGLT+S+LF+R+FGKK MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 426 ISFTVWDVGGQDKIRPLWRHYFQNTQGVIFVIDSNDRERISEAADELHKMLEEDDLRDAV 247
I FTVWDVGGQDKIRPLWRHYFQNTQG+IFV+DSNDRER+ E+ADEL KML+ED+LRDAV
Sbjct: 61 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAV 120
Query: 246 ILVFANKQDLPNAMSAAEITDKLRLHNLRGRTWYIQQSCAASGAGLYEGLDWLSNELGKK 67
+LVFANKQD+PNAM +E+TDKL L +LR RTWY+Q +CA G GLY+GLDWLS+EL K+
Sbjct: 121 LLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR 180
>sp|O48920|ARF_VIGUN ADP-ribosylation factor
Length = 181
Score = 311 bits (796), Expect = 2e-84
Identities = 149/180 (82%), Positives = 164/180 (91%)
Frame = -2
Query: 606 MGLTMSSLFNRLFGKKSMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 427
MGL+ + LF+RLF KK MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 426 ISFTVWDVGGQDKIRPLWRHYFQNTQGVIFVIDSNDRERISEAADELHKMLEEDDLRDAV 247
ISFTVWDVGGQDKIRPLWRHYFQNTQG+IFV+DSNDR+R+ EA DELH+ML ED+LRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 246 ILVFANKQDLPNAMSAAEITDKLRLHNLRGRTWYIQQSCAASGAGLYEGLDWLSNELGKK 67
+LVFANKQDLPNAM+AAEITDKL LH+LR R WYIQ +CA SG GLYEGL+WLSN + K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLEWLSNNIASK 180
>sp|O48649|ARF1_SALBA ADP-ribosylation factor 1
Length = 181
Score = 310 bits (795), Expect = 2e-84
Identities = 149/180 (82%), Positives = 162/180 (90%)
Frame = -2
Query: 606 MGLTMSSLFNRLFGKKSMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 427
MGL+ + L RLF KK MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLSFTKLLGRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 426 ISFTVWDVGGQDKIRPLWRHYFQNTQGVIFVIDSNDRERISEAADELHKMLEEDDLRDAV 247
ISFTVWDVGGQDKIRPLWRHYFQNTQG+IFV+DSNDR+R+ EA DELH+ML ED+LRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVGEARDELHRMLNEDELRDAV 120
Query: 246 ILVFANKQDLPNAMSAAEITDKLRLHNLRGRTWYIQQSCAASGAGLYEGLDWLSNELGKK 67
+LVFANKQDLPNAM+AAEITDKL LH+LR R WYIQ +CA SG GLYEGLDWLSN + K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNISSK 180
>sp|P51822|ARF1_DAUCA ADP-ribosylation factor 1
Length = 181
Score = 310 bits (794), Expect = 3e-84
Identities = 149/180 (82%), Positives = 163/180 (90%)
Frame = -2
Query: 606 MGLTMSSLFNRLFGKKSMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 427
MGL+ + LF+RLF KK MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 426 ISFTVWDVGGQDKIRPLWRHYFQNTQGVIFVIDSNDRERISEAADELHKMLEEDDLRDAV 247
ISFTVWDVGGQDKIRPLWRHYFQNTQG+IFV+DSNDR+R+ EA DELH+ML ED+LRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 246 ILVFANKQDLPNAMSAAEITDKLRLHNLRGRTWYIQQSCAASGAGLYEGLDWLSNELGKK 67
+LVFANKQDLPNAM+AAEI DKL LH+LR R WYIQ +CA SG GLYEGLDWLSN + K
Sbjct: 121 LLVFANKQDLPNAMNAAEIIDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
>sp|P51824|ARF1_SOLTU ADP-ribosylation factor 1
Length = 197
Score = 310 bits (793), Expect = 4e-84
Identities = 149/177 (84%), Positives = 165/177 (93%)
Frame = -2
Query: 606 MGLTMSSLFNRLFGKKSMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 427
MGLT+S LF+RLF KK MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLTISKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 426 ISFTVWDVGGQDKIRPLWRHYFQNTQGVIFVIDSNDRERISEAADELHKMLEEDDLRDAV 247
ISFTVWDVGGQDKIRPLWRHYFQNTQG+IFV+DSNDR+R++EA +EL +ML ED+LRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVNEAREELMRMLAEDELRDAV 120
Query: 246 ILVFANKQDLPNAMSAAEITDKLRLHNLRGRTWYIQQSCAASGAGLYEGLDWLSNEL 76
+LVFANKQDLPNAM+AAEITDKL LH+LR R WYIQ +CA SG GLYEGLDWLSN++
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNQI 177
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,707,743
Number of Sequences: 369166
Number of extensions: 1746173
Number of successful extensions: 6515
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6445
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8197207050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)