Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_C05
(428 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P47530|Y288_MYCGE Hypothetical protein MG288 30 2.1
sp|Q5HKP7|ICAC_STAEQ Biofilm PIA synthesis protein icaC (In... 30 2.8
sp|Q6FMP5|PFA5_CANGA Palmitoyltransferase PFA5 (Protein fat... 29 3.6
sp|P59206|LYTB_STRR6 Putative endo-beta-N-acetylglucosamini... 28 6.2
sp|P59205|LYTB_STRPN Putative endo-beta-N-acetylglucosamini... 28 6.2
sp|P52225|CCMF_PSEFL Cytochrome c-type biogenesis protein cycK 28 6.2
sp|Q80930|VE2_HPV50 Regulatory protein E2 28 8.1
>sp|P47530|Y288_MYCGE Hypothetical protein MG288
Length = 414
Score = 30.0 bits (66), Expect = 2.1
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 11/93 (11%)
Frame = +2
Query: 158 DYIRNFNIIR*KFSRKSKIEISIDYINDF----IWNNFAYFQ-----WN--LDILWFISM 304
D+ N R + K K EI I Y + +++ FA F WN +D+ + +
Sbjct: 277 DWKNNGIEFRQHYPYKFKFEIDIKYQGGYKLTGLFSWFAPFSGIPSSWNGEMDVKFIVDG 336
Query: 305 DLDSLLFNCSHCSDWCCNSLFQINNQQLLFDLN 403
DLD +N +D+ SLFQ + QLLF L+
Sbjct: 337 DLD---YNLVQNTDYP-GSLFQFKDNQLLFTLH 365
>sp|Q5HKP7|ICAC_STAEQ Biofilm PIA synthesis protein icaC (Intercellular adhesion protein
C)
sp|P69518|ICAC_STAEP Biofilm PIA synthesis protein icaC (Intercellular adhesion protein
C)
Length = 355
Score = 29.6 bits (65), Expect = 2.8
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Frame = +3
Query: 216 KFLSIILMILSGITLL---ISSGIWISYGSFPWTLTACSLTVATVLIGVVTHF 365
K+L I++M+ G +L +S + + SF +TLT + + +L+GV HF
Sbjct: 214 KYLIIVIMLTLGAYVLFIAVSGSDYWNVTSFTYTLTLYNSVMFFLLLGVCMHF 266
>sp|Q6FMP5|PFA5_CANGA Palmitoyltransferase PFA5 (Protein fatty acyltransferase 5)
Length = 352
Score = 29.3 bits (64), Expect = 3.6
Identities = 13/31 (41%), Positives = 23/31 (74%)
Frame = +3
Query: 198 QENQKLKFLSIILMILSGITLLISSGIWISY 290
Q + +L I+L+I+SGI L++SG+++SY
Sbjct: 186 QYHARLNANLIVLLIISGIGWLMTSGLFVSY 216
>sp|P59206|LYTB_STRR6 Putative endo-beta-N-acetylglucosaminidase precursor (Murein
hydrolase)
Length = 702
Score = 28.5 bits (62), Expect = 6.2
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -3
Query: 402 FKSNNNCWLFI*KSELQHQSEQWLQLKSK 316
+ S + W +I K++ QH ++WLQ+K K
Sbjct: 129 YDSQYDAWFYI-KADGQHAEKEWLQIKGK 156
>sp|P59205|LYTB_STRPN Putative endo-beta-N-acetylglucosaminidase precursor (Murein
hydrolase)
Length = 658
Score = 28.5 bits (62), Expect = 6.2
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -3
Query: 402 FKSNNNCWLFI*KSELQHQSEQWLQLKSK 316
+ S + W +I K++ QH ++WLQ+K K
Sbjct: 129 YDSQYDAWFYI-KADGQHAEKEWLQIKGK 156
>sp|P52225|CCMF_PSEFL Cytochrome c-type biogenesis protein cycK
Length = 660
Score = 28.5 bits (62), Expect = 6.2
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 237 MILSGITLLISSGIWISYGSFPWTLTACSLTVATVLIGVVTHFF 368
++L + L + +GI +YG F W + A L A VL+ V F
Sbjct: 433 VLLGSVALAVVAGI--AYGDFNWAVLATFLLAAWVLLAGVRDIF 474
>sp|Q80930|VE2_HPV50 Regulatory protein E2
Length = 396
Score = 28.1 bits (61), Expect = 8.1
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3
Query: 252 ITLLISSGIWISYGSFPWTLTACSL 326
I LL+ S +GS PWTL+ CSL
Sbjct: 81 IQLLLQSLYKSDFGSEPWTLSECSL 105
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,620,972
Number of Sequences: 369166
Number of extensions: 768211
Number of successful extensions: 2006
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2006
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2095022160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)