Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_C01
(629 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8WXA9|SFR12_HUMAN Splicing factor, arginine/serine-rich... 70 6e-12
sp|Q8BZX4|SFR12_MOUSE Splicing factor, arginine/serine-rich... 70 6e-12
sp|Q9JKL7|SFR12_RAT Splicing factor, arginine/serine-rich 1... 70 6e-12
sp|O01159|RSP7_CAEEL Probable splicing factor, arginine/ser... 48 2e-05
sp|Q86U06|RBM23_HUMAN Probable RNA-binding protein 23 (RNA-... 36 0.071
sp|Q14498|RNPC2_HUMAN RNA-binding region containing protein... 36 0.093
sp|Q8VH51|RNPC2_MOUSE RNA-binding region containing protein... 35 0.12
sp|Q09301|YQOC_CAEEL Hypothetical RNA-binding protein EEED8... 30 5.1
sp|Q09295|YQO4_CAEEL Hypothetical RNA-binding protein EEED8... 30 5.1
>sp|Q8WXA9|SFR12_HUMAN Splicing factor, arginine/serine-rich 12 (Serine-arginine-rich
splicing regulatory protein 86) (SRrp86) (Splicing
regulatory protein 508) (SRrp508)
Length = 508
Score = 69.7 bits (169), Expect = 6e-12
Identities = 38/90 (42%), Positives = 55/90 (61%), Gaps = 7/90 (7%)
Frame = +3
Query: 165 QVLDFFQPVAEVKFIRMAGSDNDSA--AYVEFSEQSAIVKAFGMMGTNLNTRPIMIQHSN 338
Q+L+FF+ V EVKF+RMAG + A+VEF++Q+++ +A G RP+ I HSN
Sbjct: 82 QLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKINHSN 141
Query: 339 VAIVKPSNY-----LRGLEETNRRVRDSGS 413
AIVKP + LEE +RVR++ S
Sbjct: 142 NAIVKPPEMTPQAAAKELEEVMKRVREAQS 171
>sp|Q8BZX4|SFR12_MOUSE Splicing factor, arginine/serine-rich 12 (Serine-arginine-rich
splicing regulatory protein 86) (SRrp86)
Length = 494
Score = 69.7 bits (169), Expect = 6e-12
Identities = 38/90 (42%), Positives = 55/90 (61%), Gaps = 7/90 (7%)
Frame = +3
Query: 165 QVLDFFQPVAEVKFIRMAGSDNDSA--AYVEFSEQSAIVKAFGMMGTNLNTRPIMIQHSN 338
Q+L+FF+ V EVKF+RMAG + A+VEF++Q+++ +A G RP+ I HSN
Sbjct: 85 QLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKINHSN 144
Query: 339 VAIVKPSNY-----LRGLEETNRRVRDSGS 413
AIVKP + LEE +RVR++ S
Sbjct: 145 NAIVKPPEMTPQAAAKELEEVMKRVREAQS 174
>sp|Q9JKL7|SFR12_RAT Splicing factor, arginine/serine-rich 12 (Serine-arginine-rich
splicing regulatory protein 86) (SRrp86) (SR-related
protein of 86 kDa)
Length = 494
Score = 69.7 bits (169), Expect = 6e-12
Identities = 38/90 (42%), Positives = 55/90 (61%), Gaps = 7/90 (7%)
Frame = +3
Query: 165 QVLDFFQPVAEVKFIRMAGSDNDSA--AYVEFSEQSAIVKAFGMMGTNLNTRPIMIQHSN 338
Q+L+FF+ V EVKF+RMAG + A+VEF++Q+++ +A G RP+ I HSN
Sbjct: 85 QLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKINHSN 144
Query: 339 VAIVKPSNY-----LRGLEETNRRVRDSGS 413
AIVKP + LEE +RVR++ S
Sbjct: 145 NAIVKPPEMTPQAAAKELEEVMKRVREAQS 174
>sp|O01159|RSP7_CAEEL Probable splicing factor, arginine/serine-rich 7 (p54)
Length = 452
Score = 47.8 bits (112), Expect = 2e-05
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Frame = +3
Query: 165 QVLDFFQPV-AEVKFIRMAGSDND---SAAYVEFSEQSAIVKAFGMMGTNLNTRPIMIQH 332
+VL+ F EV + RMA + + AYVEFS+Q+++ A G RP+ IQH
Sbjct: 178 EVLELFNMYFGEVMYARMASGPDALPCAYAYVEFSQQASVCNALQNDGFEFKERPLKIQH 237
Query: 333 SNVAIVKP 356
S VAI+KP
Sbjct: 238 SRVAIIKP 245
>sp|Q86U06|RBM23_HUMAN Probable RNA-binding protein 23 (RNA-binding motif protein 23)
(RNA-binding region containing protein 4) (Splicing
factor SF2)
Length = 439
Score = 36.2 bits (82), Expect = 0.071
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = +3
Query: 174 DFFQPVAEVKFIRMAGSDND----SAAYVEFSEQSAIVKAFGMMGTNLNTRPIMIQHS 335
DFF V +V+ +R+ N AYVEF E ++ A G+ G L PI++Q S
Sbjct: 184 DFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQAS 241
>sp|Q14498|RNPC2_HUMAN RNA-binding region containing protein 2 (Hepatocellular carcinoma
protein 1) (Splicing factor HCC1)
Length = 530
Score = 35.8 bits (81), Expect = 0.093
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Frame = +3
Query: 174 DFFQPVAEVKFIRMAGSDND----SAAYVEFSEQSAIVKAFGMMGTNLNTRPIMIQHS-- 335
+FF V +V+ +RM N AYVEF + S++ A G+ G + PI++Q S
Sbjct: 171 EFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQA 230
Query: 336 --NVAIVKPSNYLRG 374
N A +N +G
Sbjct: 231 EKNRAAAMANNLQKG 245
>sp|Q8VH51|RNPC2_MOUSE RNA-binding region containing protein 2 (Coactivator of activating
protein 1 and estrogen receptors) (Coactivator of AP-1
and ERs) (Transcription coactivator CAPER)
Length = 530
Score = 35.4 bits (80), Expect = 0.12
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Frame = +3
Query: 174 DFFQPVAEVKFIRMAGSDND----SAAYVEFSEQSAIVKAFGMMGTNLNTRPIMIQHS-- 335
+FF V +V+ +RM N AYVEF + S++ A G+ G + PI++Q S
Sbjct: 171 EFFSTVGKVRDVRMISDRNSRRSRGIAYVEFVDVSSVRLAIGLTGQRVLGVPIIVQASQA 230
Query: 336 --NVAIVKPSNYLRG 374
N A +N +G
Sbjct: 231 EKNRAAAMANNLQKG 245
>sp|Q09301|YQOC_CAEEL Hypothetical RNA-binding protein EEED8.12 in chromosome II
Length = 197
Score = 30.0 bits (66), Expect = 5.1
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 240 AYVEFSEQSAIVKAFGMMGTNLNTRPIMIQHSNVAIVKPSNYLRG 374
AY+EF + S+I A M G+ +RPI++ I + +RG
Sbjct: 105 AYIEFDDSSSIENALVMNGSLFRSRPIVVTAKRTNIPGMGHGVRG 149
>sp|Q09295|YQO4_CAEEL Hypothetical RNA-binding protein EEED8.4 in chromosome II
Length = 237
Score = 30.0 bits (66), Expect = 5.1
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 240 AYVEFSEQSAIVKAFGMMGTNLNTRPIMIQHSNVAIVKPSNYLRG 374
AY+EF + S+I A M G+ +RPI++ I + +RG
Sbjct: 145 AYIEFDDSSSIENALVMNGSLFRSRPIVVTAKRTNIPGMGHGVRG 189
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,570,746
Number of Sequences: 369166
Number of extensions: 1174837
Number of successful extensions: 2802
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2799
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5023626210
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)