Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_B14
(694 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q964E0|ACTC_BIOTE Actin, cytoplasmic 398 e-111
sp|Q964E1|ACTC_BIOOB Actin, cytoplasmic 398 e-111
sp|Q964E2|ACTC_BIOPF Actin, cytoplasmic 398 e-111
sp|P10984|ACT2_CAEEL Actin-2 397 e-110
sp|P92176|ACT2_LUMTE Actin-2 397 e-110
sp|Q26065|ACT_PLAMG Actin, adductor muscle 397 e-110
sp|P92179|ACTC_BIOGL Actin, cytoplasmic 397 e-110
sp|P41339|ACTA_LIMPO Actin, acrosomal process isoform (Acti... 397 e-110
sp|Q964D9|ACTC_HELTI Actin, cytoplasmic 397 e-110
sp|Q964E3|ACTC_BIOAL Actin, cytoplasmic 397 e-110
>sp|Q964E0|ACTC_BIOTE Actin, cytoplasmic
Length = 376
Score = 398 bits (1022), Expect = e-111
Identities = 202/220 (91%), Positives = 207/220 (94%), Gaps = 2/220 (0%)
Frame = +2
Query: 2 DEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 181
DEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 3 DEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 62
Query: 182 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 361
RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ
Sbjct: 63 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 122
Query: 362 IMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLA 541
IMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAI+RLDLA
Sbjct: 123 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLA 182
Query: 542 ERDLTDYVM*ILTERDTVSQHS*ER-IVRDIRENL-YIAL 655
RDLTDY+M ILTER + ER IVRDI+E L Y+AL
Sbjct: 183 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVAL 222
>sp|Q964E1|ACTC_BIOOB Actin, cytoplasmic
Length = 376
Score = 398 bits (1022), Expect = e-111
Identities = 202/220 (91%), Positives = 207/220 (94%), Gaps = 2/220 (0%)
Frame = +2
Query: 2 DEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 181
DEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 3 DEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 62
Query: 182 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 361
RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ
Sbjct: 63 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 122
Query: 362 IMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLA 541
IMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAI+RLDLA
Sbjct: 123 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLA 182
Query: 542 ERDLTDYVM*ILTERDTVSQHS*ER-IVRDIRENL-YIAL 655
RDLTDY+M ILTER + ER IVRDI+E L Y+AL
Sbjct: 183 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVAL 222
>sp|Q964E2|ACTC_BIOPF Actin, cytoplasmic
Length = 376
Score = 398 bits (1022), Expect = e-111
Identities = 202/220 (91%), Positives = 207/220 (94%), Gaps = 2/220 (0%)
Frame = +2
Query: 2 DEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 181
DEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 3 DEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 62
Query: 182 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 361
RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ
Sbjct: 63 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 122
Query: 362 IMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLA 541
IMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAI+RLDLA
Sbjct: 123 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLA 182
Query: 542 ERDLTDYVM*ILTERDTVSQHS*ER-IVRDIRENL-YIAL 655
RDLTDY+M ILTER + ER IVRDI+E L Y+AL
Sbjct: 183 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVAL 222
>sp|P10984|ACT2_CAEEL Actin-2
Length = 376
Score = 397 bits (1021), Expect = e-110
Identities = 202/220 (91%), Positives = 207/220 (94%), Gaps = 2/220 (0%)
Frame = +2
Query: 2 DEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 181
D+DVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 3 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 62
Query: 182 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 361
RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ
Sbjct: 63 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 122
Query: 362 IMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLA 541
IMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLA
Sbjct: 123 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLA 182
Query: 542 ERDLTDYVM*ILTERDTVSQHS*ER-IVRDIRENL-YIAL 655
RDLTDY+M ILTER + ER IVRDI+E L Y+AL
Sbjct: 183 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVAL 222
>sp|P92176|ACT2_LUMTE Actin-2
Length = 376
Score = 397 bits (1021), Expect = e-110
Identities = 202/220 (91%), Positives = 208/220 (94%), Gaps = 2/220 (0%)
Frame = +2
Query: 2 DEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 181
+EDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 3 EEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 62
Query: 182 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 361
RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ
Sbjct: 63 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 122
Query: 362 IMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLA 541
IMFETFN+PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLA
Sbjct: 123 IMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLA 182
Query: 542 ERDLTDYVM*ILTERDTVSQHS*ER-IVRDIRENL-YIAL 655
RDLTDY+M ILTER + ER IVRDI+E L Y+AL
Sbjct: 183 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVAL 222
>sp|Q26065|ACT_PLAMG Actin, adductor muscle
Length = 376
Score = 397 bits (1021), Expect = e-110
Identities = 202/220 (91%), Positives = 208/220 (94%), Gaps = 2/220 (0%)
Frame = +2
Query: 2 DEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 181
D++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 3 DDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 62
Query: 182 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 361
RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ
Sbjct: 63 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 122
Query: 362 IMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLA 541
IMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLA
Sbjct: 123 IMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLA 182
Query: 542 ERDLTDYVM*ILTERDTVSQHS*ER-IVRDIRENL-YIAL 655
RDLTDY+M ILTER + ER IVRDI+E L Y+AL
Sbjct: 183 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVAL 222
>sp|P92179|ACTC_BIOGL Actin, cytoplasmic
Length = 376
Score = 397 bits (1020), Expect = e-110
Identities = 201/220 (91%), Positives = 207/220 (94%), Gaps = 2/220 (0%)
Frame = +2
Query: 2 DEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 181
DEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 3 DEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 62
Query: 182 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 361
RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ
Sbjct: 63 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 122
Query: 362 IMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLA 541
IMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTHTVPIYEGYALPHAI+RLDLA
Sbjct: 123 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAIMRLDLA 182
Query: 542 ERDLTDYVM*ILTERDTVSQHS*ER-IVRDIRENL-YIAL 655
RDLTDY+M ILTER + ER IVRDI+E L Y+AL
Sbjct: 183 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVAL 222
>sp|P41339|ACTA_LIMPO Actin, acrosomal process isoform (Actin-5)
Length = 376
Score = 397 bits (1020), Expect = e-110
Identities = 202/220 (91%), Positives = 207/220 (94%), Gaps = 2/220 (0%)
Frame = +2
Query: 2 DEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 181
DEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 3 DEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 62
Query: 182 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 361
RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ
Sbjct: 63 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 122
Query: 362 IMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLA 541
IMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAILRLDLA
Sbjct: 123 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLA 182
Query: 542 ERDLTDYVM*ILTERDTVSQHS*ER-IVRDIRENL-YIAL 655
RDLTDY+M ILTER + ER IVRDI+E L Y+AL
Sbjct: 183 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVAL 222
>sp|Q964D9|ACTC_HELTI Actin, cytoplasmic
Length = 376
Score = 397 bits (1020), Expect = e-110
Identities = 201/220 (91%), Positives = 207/220 (94%), Gaps = 2/220 (0%)
Frame = +2
Query: 2 DEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 181
DEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 3 DEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 62
Query: 182 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 361
RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ
Sbjct: 63 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 122
Query: 362 IMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLA 541
IMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTHTVPIYEGYALPHAI+RLDLA
Sbjct: 123 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVIDSGDGVTHTVPIYEGYALPHAIMRLDLA 182
Query: 542 ERDLTDYVM*ILTERDTVSQHS*ER-IVRDIRENL-YIAL 655
RDLTDY+M ILTER + ER IVRDI+E L Y+AL
Sbjct: 183 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVAL 222
>sp|Q964E3|ACTC_BIOAL Actin, cytoplasmic
Length = 376
Score = 397 bits (1020), Expect = e-110
Identities = 201/220 (91%), Positives = 207/220 (94%), Gaps = 2/220 (0%)
Frame = +2
Query: 2 DEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 181
DEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 3 DEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 62
Query: 182 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 361
RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ
Sbjct: 63 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 122
Query: 362 IMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLA 541
IMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTHTVPIYEGYALPHAI+RLDLA
Sbjct: 123 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAIMRLDLA 182
Query: 542 ERDLTDYVM*ILTERDTVSQHS*ER-IVRDIRENL-YIAL 655
RDLTDY+M ILTER + ER IVRDI+E L Y+AL
Sbjct: 183 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVAL 222
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,496,160
Number of Sequences: 369166
Number of extensions: 1748303
Number of successful extensions: 5889
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5796
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5976365205
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)