Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_B10
(244 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q80T79|CSMD3_MOUSE CUB and sushi multiple domains protein 3 32 0.35
sp|Q7Z407|CSMD3_HUMAN CUB and sushi multiple domains protei... 32 0.35
sp|Q9ZB11|GALR_STRTR HTH-type transcriptional regulator gal... 32 0.46
sp|P33842|VA19_VARV Protein A19 29 3.9
sp|P16773|UL131_HCMVA Hypothetical protein UL131 29 3.9
sp|Q7Z408|CSMD2_HUMAN CUB and sushi multiple domains protein 2 29 3.9
sp|Q39511|MT1_CASGL Metallothionein-like protein 1 (MT-1) 28 6.6
>sp|Q80T79|CSMD3_MOUSE CUB and sushi multiple domains protein 3
Length = 2796
Score = 32.3 bits (72), Expect = 0.35
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = +2
Query: 32 NDYRCCYTAAIERCKVKNVKVNQITLANGDPCKLIDGNFIQKTVCGGGCNARSSIRGL 205
N++ C Y+ ++ K N+ LA GD K+ DG KT G +S+RGL
Sbjct: 422 NNHECIYSLQVQAGKGINISARTFHLAQGDVLKIYDGK--DKTTHLLGAFTGASMRGL 477
>sp|Q7Z407|CSMD3_HUMAN CUB and sushi multiple domains protein 3 precursor
Length = 3670
Score = 32.3 bits (72), Expect = 0.35
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = +2
Query: 32 NDYRCCYTAAIERCKVKNVKVNQITLANGDPCKLIDGNFIQKTVCGGGCNARSSIRGL 205
N++ C Y+ ++ K N+ LA GD K+ DG KT G +S+RGL
Sbjct: 1226 NNHECIYSIQVQAGKGINISARTFHLAQGDVLKIYDGK--DKTTHLLGAFTGASMRGL 1281
>sp|Q9ZB11|GALR_STRTR HTH-type transcriptional regulator galR (Galactose operon
repressor)
Length = 331
Score = 32.0 bits (71), Expect = 0.46
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Frame = +2
Query: 56 AAIERCKVKNVKVNQITLANGDPCKLID-GNFIQKTVC---GGGCNARSSIRGLEQITNP 223
A +ER K V V+ TL G PC D N +Q +C GCN + G E+ T+
Sbjct: 128 AKLERLKKTLVFVDSDTLNQGHPCVTTDFENSVQSALCYLKEQGCNNIGLLIGQEKTTDA 187
Query: 224 LTIFSE 241
I S+
Sbjct: 188 TEIISD 193
>sp|P33842|VA19_VARV Protein A19
Length = 76
Score = 28.9 bits (63), Expect = 3.9
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +2
Query: 20 KSIINDYRCCYTAAIERCKVKNVKVNQITLANGDPCKLIDGNFIQKTVCG 169
K+ + D C T ++ C+ K VK++ IT + D + GN + T CG
Sbjct: 18 KTTVIDEDDCMTCSV--CQSKLVKISDITKVSLDYINTMRGNTLACTACG 65
>sp|P16773|UL131_HCMVA Hypothetical protein UL131
Length = 76
Score = 28.9 bits (63), Expect = 3.9
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 8 NNGAKSIINDYRCCYTAAIERCKVKNV 88
N G K+II +YR T A+ RC K V
Sbjct: 39 NRGKKTIITEYRITGTRALARCPTKPV 65
>sp|Q7Z408|CSMD2_HUMAN CUB and sushi multiple domains protein 2
Length = 3487
Score = 28.9 bits (63), Expect = 3.9
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 9/72 (12%)
Frame = +2
Query: 32 NDYRCCYTAAIERCKVKNVKVNQITLANGDPCKLIDGN---------FIQKTVCGGGCNA 184
N++ C Y+ + K +K L+ GD K+ DGN F + G N+
Sbjct: 1120 NNHECIYSIQTQPGKGIQLKARAFELSEGDVLKVYDGNNNSARLLGVFSHSEMMGVTLNS 1179
Query: 185 RSSIRGLEQITN 220
SS L+ IT+
Sbjct: 1180 TSSSLWLDFITD 1191
>sp|Q39511|MT1_CASGL Metallothionein-like protein 1 (MT-1)
Length = 71
Score = 28.1 bits (61), Expect = 6.6
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 164 CGGGCNARSSIRGLEQITNPLTIFSE 241
CG GCN ++ + GL + T TI ++
Sbjct: 12 CGSGCNCKNPVLGLSEKTTSKTIVAD 37
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,385,308
Number of Sequences: 369166
Number of extensions: 351559
Number of successful extensions: 727
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 68,354,980
effective HSP length: 51
effective length of database: 58,933,495
effective search space used: 1709071355
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)