Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_B09
(450 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P48158|RL23_CAEEL 60S ribosomal protein L23 202 2e-52
sp|P62830|RL23_MOUSE 60S ribosomal protein L23 >gi|51338617... 193 1e-49
sp|Q6PC14|RL23_BRARE 60S ribosomal protein L23 192 3e-49
sp|Q5REU2|RL23_PONPY 60S ribosomal protein L23 192 4e-49
sp|Q93140|RL23_BRUMA 60S ribosomal protein L23 189 2e-48
sp|Q9GNE2|RL23_AEDAE 60S ribosomal protein L23 (L17A) 189 2e-48
sp|P48159|RL23_DROME 60S ribosomal protein L23 (L17A) 189 2e-48
sp|Q9XSU3|RL23_CANFA 60S ribosomal protein L23 188 4e-48
sp|O42867|RL23_SCHPO 60S ribosomal protein L23 186 2e-47
sp|Q07760|RL23_TOBAC 60S ribosomal protein L23 184 1e-46
>sp|P48158|RL23_CAEEL 60S ribosomal protein L23
Length = 140
Score = 202 bits (515), Expect = 2e-52
Identities = 98/131 (74%), Positives = 111/131 (84%)
Frame = +2
Query: 5 MSKXXXXXXXXXXXXISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDM 184
MSK ISLGLPV AV+NCADN+GAKN+++ISV+G + RLNRLP+A VGDM
Sbjct: 1 MSKRGRGGASGAKFRISLGLPVGAVMNCADNTGAKNLFVISVYGIRGRLNRLPSAGVGDM 60
Query: 185 VVCSVKKGKPELRKKVLQGVVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGP 364
VCSVKKGKPELRKKVLQGVVIRQRK ++RKDGT I FEDNAGV+VNNKGEMKGSAITGP
Sbjct: 61 FVCSVKKGKPELRKKVLQGVVIRQRKQFRRKDGTFIYFEDNAGVIVNNKGEMKGSAITGP 120
Query: 365 VAKECADMWPK 397
VAKECAD+WP+
Sbjct: 121 VAKECADLWPR 131
>sp|P62830|RL23_MOUSE 60S ribosomal protein L23
sp|P62832|RL23_RAT 60S ribosomal protein L23
sp|Q90YU5|RL23_ICTPU 60S ribosomal protein L23
sp|P62829|RL23_HUMAN 60S ribosomal protein L23 (Ribosomal protein L17)
sp|P62831|RL23_PIG 60S ribosomal protein L23 (Ribosomal protein L17)
Length = 140
Score = 193 bits (491), Expect = 1e-49
Identities = 97/131 (74%), Positives = 106/131 (80%)
Frame = +2
Query: 5 MSKXXXXXXXXXXXXISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDM 184
MSK ISLGLPV AVINCADN+GAKN+YIISV G K RLNRLPAA VGDM
Sbjct: 1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDM 60
Query: 185 VVCSVKKGKPELRKKVLQGVVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGP 364
V+ +VKKGKPELRKKV VVIRQRK Y+RKDG + FEDNAGV+VNNKGEMKGSAITGP
Sbjct: 61 VMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGP 120
Query: 365 VAKECADMWPK 397
VAKECAD+WP+
Sbjct: 121 VAKECADLWPR 131
>sp|Q6PC14|RL23_BRARE 60S ribosomal protein L23
Length = 140
Score = 192 bits (488), Expect = 3e-49
Identities = 96/131 (73%), Positives = 106/131 (80%)
Frame = +2
Query: 5 MSKXXXXXXXXXXXXISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDM 184
MSK ISLGLPV AVINCADN+GAKN+YIISV G K RLNRLP+A VGDM
Sbjct: 1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPSAGVGDM 60
Query: 185 VVCSVKKGKPELRKKVLQGVVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGP 364
V+ +VKKGKPELRKKV VVIRQRK Y+RKDG + FEDNAGV+VNNKGEMKGSAITGP
Sbjct: 61 VMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGP 120
Query: 365 VAKECADMWPK 397
VAKECAD+WP+
Sbjct: 121 VAKECADLWPR 131
>sp|Q5REU2|RL23_PONPY 60S ribosomal protein L23
Length = 140
Score = 192 bits (487), Expect = 4e-49
Identities = 96/131 (73%), Positives = 106/131 (80%)
Frame = +2
Query: 5 MSKXXXXXXXXXXXXISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDM 184
MSK ISLGLPV AVINCADN+GAKN+YIISV G K +LNRLPAA VGDM
Sbjct: 1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGQLNRLPAAGVGDM 60
Query: 185 VVCSVKKGKPELRKKVLQGVVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGP 364
V+ +VKKGKPELRKKV VVIRQRK Y+RKDG + FEDNAGV+VNNKGEMKGSAITGP
Sbjct: 61 VMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGP 120
Query: 365 VAKECADMWPK 397
VAKECAD+WP+
Sbjct: 121 VAKECADLWPR 131
>sp|Q93140|RL23_BRUMA 60S ribosomal protein L23
Length = 140
Score = 189 bits (481), Expect = 2e-48
Identities = 93/131 (70%), Positives = 106/131 (80%)
Frame = +2
Query: 5 MSKXXXXXXXXXXXXISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDM 184
MSK ISLGLPV AV+NCADN+GAKN+++I+V G K RLNRLP+A VGDM
Sbjct: 1 MSKRGRGGASGAKFRISLGLPVGAVMNCADNTGAKNLFVIAVSGIKGRLNRLPSAGVGDM 60
Query: 185 VVCSVKKGKPELRKKVLQGVVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGP 364
V SVKKGKPELRKKVLQ VV+RQRK Y+R DG+ I FEDNAGV+VNNKGEMKGSAITGP
Sbjct: 61 FVASVKKGKPELRKKVLQAVVVRQRKQYRRIDGSSIYFEDNAGVIVNNKGEMKGSAITGP 120
Query: 365 VAKECADMWPK 397
V KECAD+WP+
Sbjct: 121 VTKECADLWPR 131
>sp|Q9GNE2|RL23_AEDAE 60S ribosomal protein L23 (L17A)
Length = 140
Score = 189 bits (481), Expect = 2e-48
Identities = 92/131 (70%), Positives = 106/131 (80%)
Frame = +2
Query: 5 MSKXXXXXXXXXXXXISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDM 184
MSK ISLGLPV AVINCADN+GAKN+Y+I+V G + RLNRLPAA VGDM
Sbjct: 1 MSKRGRGGSAGGKFRISLGLPVGAVINCADNTGAKNLYVIAVHGIRGRLNRLPAAGVGDM 60
Query: 185 VVCSVKKGKPELRKKVLQGVVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGP 364
V +VKKGKPELRKKV+ VVIRQRK ++R+DG + FEDNAGV+VNNKGEMKGSAITGP
Sbjct: 61 FVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFLYFEDNAGVIVNNKGEMKGSAITGP 120
Query: 365 VAKECADMWPK 397
VAKECAD+WP+
Sbjct: 121 VAKECADLWPR 131
>sp|P48159|RL23_DROME 60S ribosomal protein L23 (L17A)
Length = 140
Score = 189 bits (480), Expect = 2e-48
Identities = 92/131 (70%), Positives = 106/131 (80%)
Frame = +2
Query: 5 MSKXXXXXXXXXXXXISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDM 184
MSK ISLGLPV AV+NCADN+GAKN+Y+I+V G + RLNRLPAA VGDM
Sbjct: 1 MSKRGRGGTAGGKFRISLGLPVGAVMNCADNTGAKNLYVIAVHGIRGRLNRLPAAGVGDM 60
Query: 185 VVCSVKKGKPELRKKVLQGVVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGP 364
V +VKKGKPELRKKV+ VVIRQRK ++R+DG I FEDNAGV+VNNKGEMKGSAITGP
Sbjct: 61 FVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGP 120
Query: 365 VAKECADMWPK 397
VAKECAD+WP+
Sbjct: 121 VAKECADLWPR 131
>sp|Q9XSU3|RL23_CANFA 60S ribosomal protein L23
Length = 140
Score = 188 bits (478), Expect = 4e-48
Identities = 95/130 (73%), Positives = 103/130 (79%)
Frame = +2
Query: 5 MSKXXXXXXXXXXXXISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDM 184
MSK ISLGLPV AVINCADN+GAKN+YIISV G K RLNRLPAA VGDM
Sbjct: 1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDM 60
Query: 185 VVCSVKKGKPELRKKVLQGVVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGP 364
V+ +VKKGKP LRKKV VVIRQRK Y+RKDG + FEDNAGV+VNNKGEMKGSAITGP
Sbjct: 61 VMATVKKGKPXLRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGP 120
Query: 365 VAKECADMWP 394
V KECAD+WP
Sbjct: 121 VXKECADLWP 130
>sp|O42867|RL23_SCHPO 60S ribosomal protein L23
Length = 139
Score = 186 bits (472), Expect = 2e-47
Identities = 84/116 (72%), Positives = 105/116 (90%)
Frame = +2
Query: 50 ISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKK 229
++LGLPV A++NCADNSGAKN+YI+SVFGT +RLNRLPAA+ GDMV+ +VKKGKP+LRKK
Sbjct: 15 MTLGLPVQAIMNCADNSGAKNLYIVSVFGTGARLNRLPAASCGDMVLATVKKGKPDLRKK 74
Query: 230 VLQGVVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 397
++ +V+RQRK ++RKDG + FEDNAGV+VN KGEMKGSAITGPVAKECAD+WP+
Sbjct: 75 IMPAIVVRQRKAWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADLWPR 130
>sp|Q07760|RL23_TOBAC 60S ribosomal protein L23
Length = 140
Score = 184 bits (466), Expect = 1e-46
Identities = 89/131 (67%), Positives = 105/131 (80%)
Frame = +2
Query: 5 MSKXXXXXXXXXXXXISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDM 184
MSK +SLGLPVAA INCADN+GAKN+YIISV G K RLNRLP+A VGDM
Sbjct: 1 MSKRGRGGSAGNKFRMSLGLPVAATINCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
Query: 185 VVCSVKKGKPELRKKVLQGVVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGP 364
V+ +VKKGKP+LRKKV+ VV+RQRK ++RKDG + FEDNAGV+VN KGEMKGSAITGP
Sbjct: 61 VMATVKKGKPDLRKKVMPAVVVRQRKPWRRKDGVFMYFEDNAGVIVNAKGEMKGSAITGP 120
Query: 365 VAKECADMWPK 397
+ KECAD+WP+
Sbjct: 121 IGKECADLWPR 131
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,377,863
Number of Sequences: 369166
Number of extensions: 1005659
Number of successful extensions: 2431
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2359
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2444192520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)