Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_B06
(252 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q16891|IMMT_HUMAN Mitochondrial inner membrane protein (... 30 2.2
sp|Q8CAQ8|IMMT_MOUSE Mitochondrial inner membrane protein (... 29 2.9
sp|Q9KF53|PUR9_BACHD Bifunctional purine biosynthesis prote... 29 2.9
sp|Q8NDT2|RB15B_HUMAN Putative RNA-binding protein 15B (RNA... 29 3.8
sp|P25439|BRM_DROME Homeotic gene regulator (Brahma protein) 28 8.5
>sp|Q16891|IMMT_HUMAN Mitochondrial inner membrane protein (Mitofilin) (p87/89)
(Proliferation-inducing gene 4 protein)
Length = 758
Score = 29.6 bits (65), Expect = 2.2
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = -2
Query: 182 HHQAIISVENENRIRSERDSTKNE--EELQPMAVALVEHSVDVV 57
HH++ I E + +I RD+ +NE +L+ A A +H DV+
Sbjct: 455 HHRSEIQAEQDRKIEEVRDAMENEMRTQLRRQAAAHTDHLRDVL 498
>sp|Q8CAQ8|IMMT_MOUSE Mitochondrial inner membrane protein (Mitofilin)
Length = 757
Score = 29.3 bits (64), Expect = 2.9
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = -2
Query: 182 HHQAIISVENENRIRSERDSTKNE--EELQPMAVALVEHSVDVV 57
HH++ I E + ++ RD+ +NE +L+ A A +H DV+
Sbjct: 454 HHRSEIQAEQDRKVEEVRDAMENEMRTQLRRQAAAHTDHLRDVL 497
>sp|Q9KF53|PUR9_BACHD Bifunctional purine biosynthesis protein purH [Includes:
Phosphoribosylaminoimidazolecarboxamide
formyltransferase (AICAR transformylase); IMP
cyclohydrolase (Inosinicase) (IMP synthetase) (ATIC)]
Length = 511
Score = 29.3 bits (64), Expect = 2.9
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -2
Query: 125 STKNEEELQPMAVALVEHSVDVVGQALVGSALVE 24
S N+E + P A ALVEH V++V AL E
Sbjct: 8 SVSNKEGIVPFAKALVEHEVEIVSTGGTKRALQE 41
>sp|Q8NDT2|RB15B_HUMAN Putative RNA-binding protein 15B (RNA-binding motif protein 15B)
Length = 563
Score = 28.9 bits (63), Expect = 3.8
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -2
Query: 197 GYYHYHHQAIISVENENRIRSERDSTKNEEELQPM 93
G++H+HH+A S + SER+ E E +P+
Sbjct: 337 GHHHHHHEAADSSHGKKARDSERNHRTTEAEPKPL 371
>sp|P25439|BRM_DROME Homeotic gene regulator (Brahma protein)
Length = 1638
Score = 27.7 bits (60), Expect = 8.5
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 89 PPSAGVPPHSSWNPSQTGYG 148
PPSAG PP S P+ YG
Sbjct: 249 PPSAGTPPQCSTPPASNPYG 268
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,788,888
Number of Sequences: 369166
Number of extensions: 354316
Number of successful extensions: 1633
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1632
length of database: 68,354,980
effective HSP length: 54
effective length of database: 58,379,290
effective search space used: 1692999410
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)