Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_B05
(824 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8R5C5|ACTY_MOUSE Beta-centractin (Actin-related protein... 305 1e-82
sp|P42025|ACTY_HUMAN Beta-centractin (Actin-related protein... 304 2e-82
sp|P61164|ACTZ_MOUSE Alpha-centractin (Centractin) (Centros... 298 9e-81
sp|P45889|ACTZ_DROME Actin-like protein 87C 292 7e-79
sp|P42023|ACTZ_PNECA Actin-2 (Actin II) (Centractin-like pr... 226 4e-59
sp|P38673|ACTZ_NEUCR Actin-like protein (Centractin) 210 4e-54
sp|P27131|ACT1_NAEFO Actin-1 (Actin I) 208 1e-53
sp|P02578|ACT1_ACACA Actin-1 208 2e-53
sp|P53496|ACT11_ARATH Actin-11 208 2e-53
sp|P10988|ACT1_PLAFA Actin-1 (Actin I) 208 2e-53
>sp|Q8R5C5|ACTY_MOUSE Beta-centractin (Actin-related protein 1B) (ARP1B)
Length = 376
Score = 305 bits (781), Expect = 1e-82
Identities = 145/199 (72%), Positives = 173/199 (86%)
Frame = +3
Query: 3 LQHAIMRTDIAGRDVSRYLRLLLRKEGTHFQTSAEFEIVRQLKEKACFLSANPEMQEQSE 182
+ H+IMR DIAGRDVSRYLRLLLRKEG F TSAEFE+VR +KE+AC+LS NP+ E E
Sbjct: 176 MPHSIMRVDIAGRDVSRYLRLLLRKEGADFHTSAEFEVVRTIKERACYLSINPQKDEALE 235
Query: 183 IDNTTYPLPDGSKLRIGGAKFRAPELLFRPDLIGSECDGIHEVLAYSIQKSDMDLRQILY 362
+ Y LPDGS L +G A+FRAPELLF+PDL+G E +G+HEVLA++I KSDMDLR+ L+
Sbjct: 236 TEKVQYTLPDGSTLDVGPARFRAPELLFQPDLVGDESEGLHEVLAFAIHKSDMDLRRTLF 295
Query: 363 GNIVLSGGSTLFKGFGDRILSELKKLAPKDNKIRISAPQERLYSTWIGGSILASLDTFRR 542
NIVLSGGSTLFKGFGDR+LSE+KKLAPKD KI+ISAPQERLYSTWIGGSILASLDTF++
Sbjct: 296 SNIVLSGGSTLFKGFGDRLLSEVKKLAPKDVKIKISAPQERLYSTWIGGSILASLDTFKK 355
Query: 543 MWISKREFEDDGYRALHRK 599
MW+SK+E+E+DG RA+HRK
Sbjct: 356 MWVSKKEYEEDGSRAIHRK 374
>sp|P42025|ACTY_HUMAN Beta-centractin (Actin-related protein 1B) (ARP1B)
Length = 376
Score = 304 bits (778), Expect = 2e-82
Identities = 144/199 (72%), Positives = 173/199 (86%)
Frame = +3
Query: 3 LQHAIMRTDIAGRDVSRYLRLLLRKEGTHFQTSAEFEIVRQLKEKACFLSANPEMQEQSE 182
+ H+IMR DIAGRDVSRYLRLLLRKEG F TSAEFE+VR +KE+AC+LS NP+ E E
Sbjct: 176 MPHSIMRVDIAGRDVSRYLRLLLRKEGVDFHTSAEFEVVRTIKERACYLSINPQKDEALE 235
Query: 183 IDNTTYPLPDGSKLRIGGAKFRAPELLFRPDLIGSECDGIHEVLAYSIQKSDMDLRQILY 362
+ Y LPDGS L +G A+FRAPELLF+PDL+G E +G+HEV+A++I KSDMDLR+ L+
Sbjct: 236 TEKVQYTLPDGSTLDVGPARFRAPELLFQPDLVGDESEGLHEVVAFAIHKSDMDLRRTLF 295
Query: 363 GNIVLSGGSTLFKGFGDRILSELKKLAPKDNKIRISAPQERLYSTWIGGSILASLDTFRR 542
NIVLSGGSTLFKGFGDR+LSE+KKLAPKD KI+ISAPQERLYSTWIGGSILASLDTF++
Sbjct: 296 ANIVLSGGSTLFKGFGDRLLSEVKKLAPKDIKIKISAPQERLYSTWIGGSILASLDTFKK 355
Query: 543 MWISKREFEDDGYRALHRK 599
MW+SK+E+E+DG RA+HRK
Sbjct: 356 MWVSKKEYEEDGSRAIHRK 374
>sp|P61164|ACTZ_MOUSE Alpha-centractin (Centractin) (Centrosome-associated actin homolog)
(Actin-RPV) (ARP1)
sp|P61163|ACTZ_HUMAN Alpha-centractin (Centractin) (Centrosome-associated actin homolog)
(Actin-RPV) (ARP1)
sp|P61162|ACTZ_CANFA Alpha-centractin (Centractin) (Centrosome-associated actin homolog)
(Actin-RPV) (ARP1)
Length = 376
Score = 298 bits (764), Expect = 9e-81
Identities = 143/199 (71%), Positives = 172/199 (86%)
Frame = +3
Query: 3 LQHAIMRTDIAGRDVSRYLRLLLRKEGTHFQTSAEFEIVRQLKEKACFLSANPEMQEQSE 182
+ H+IMR DIAGRDVSR+LRL LRKEG F +S+EFEIV+ +KE+AC+LS NP+ E E
Sbjct: 176 MPHSIMRIDIAGRDVSRFLRLYLRKEGYDFHSSSEFEIVKAIKERACYLSINPQKDETLE 235
Query: 183 IDNTTYPLPDGSKLRIGGAKFRAPELLFRPDLIGSECDGIHEVLAYSIQKSDMDLRQILY 362
+ Y LPDGS + IG ++FRAPELLFRPDLIG E +GIHEVL ++IQKSDMDLR+ L+
Sbjct: 236 TEKAQYYLPDGSTIEIGPSRFRAPELLFRPDLIGEESEGIHEVLVFAIQKSDMDLRRTLF 295
Query: 363 GNIVLSGGSTLFKGFGDRILSELKKLAPKDNKIRISAPQERLYSTWIGGSILASLDTFRR 542
NIVLSGGSTLFKGFGDR+LSE+KKLAPKD KIRISAPQERLYSTWIGGSILASLDTF++
Sbjct: 296 SNIVLSGGSTLFKGFGDRLLSEVKKLAPKDVKIRISAPQERLYSTWIGGSILASLDTFKK 355
Query: 543 MWISKREFEDDGYRALHRK 599
MW+SK+E+E+DG R++HRK
Sbjct: 356 MWVSKKEYEEDGARSIHRK 374
>sp|P45889|ACTZ_DROME Actin-like protein 87C
Length = 376
Score = 292 bits (748), Expect = 7e-79
Identities = 137/199 (68%), Positives = 172/199 (86%)
Frame = +3
Query: 3 LQHAIMRTDIAGRDVSRYLRLLLRKEGTHFQTSAEFEIVRQLKEKACFLSANPEMQEQSE 182
+ H+IMR DIAGRDV+RYL+ L+R+EG +F+++AEFEIVR +KEK C+L+ NP+ +E E
Sbjct: 176 MPHSIMRVDIAGRDVTRYLKTLIRREGFNFRSTAEFEIVRSIKEKVCYLATNPQKEETVE 235
Query: 183 IDNTTYPLPDGSKLRIGGAKFRAPELLFRPDLIGSECDGIHEVLAYSIQKSDMDLRQILY 362
+ Y LPDG IG A+FRAPE+LFRPDL+G EC+GIH+VL YSI+KSDMDLR++LY
Sbjct: 236 TEKFAYKLPDGKIFEIGPARFRAPEVLFRPDLLGEECEGIHDVLMYSIEKSDMDLRKMLY 295
Query: 363 GNIVLSGGSTLFKGFGDRILSELKKLAPKDNKIRISAPQERLYSTWIGGSILASLDTFRR 542
NIVLSGGSTLFKGFGDR+LSELKK + KD KIRI+APQERLYSTW+GGSILASLDTF++
Sbjct: 296 QNIVLSGGSTLFKGFGDRLLSELKKHSAKDLKIRIAAPQERLYSTWMGGSILASLDTFKK 355
Query: 543 MWISKREFEDDGYRALHRK 599
MWISKRE+E++G +A+HRK
Sbjct: 356 MWISKREYEEEGQKAVHRK 374
>sp|P42023|ACTZ_PNECA Actin-2 (Actin II) (Centractin-like protein)
Length = 385
Score = 226 bits (577), Expect = 4e-59
Identities = 117/207 (56%), Positives = 154/207 (74%), Gaps = 11/207 (5%)
Frame = +3
Query: 12 AIMRTDIAGRDVSRYLRLLLRKEGTHFQTSAEFEIVRQLKEKACFLSANPEMQEQSEIDN 191
AI R DIAGRDV+ YL+LLLRK GT F TSAE EIVR +KEK +++ +P +E+ I+
Sbjct: 178 AIRRIDIAGRDVTEYLQLLLRKSGTIFHTSAEKEIVRIIKEKCSYVTLDPRKEEKEWINA 237
Query: 192 TT-----------YPLPDGSKLRIGGAKFRAPELLFRPDLIGSECDGIHEVLAYSIQKSD 338
+ + LPDG+ LR+G +FRAPE+LF P++IGSE GIH+V+ +I + D
Sbjct: 238 SISGGKDYTKEEEFKLPDGNVLRLGAERFRAPEILFDPEIIGSEYSGIHQVVVDAISRVD 297
Query: 339 MDLRQILYGNIVLSGGSTLFKGFGDRILSELKKLAPKDNKIRISAPQERLYSTWIGGSIL 518
+DLR+ L+GNIVLSGGSTL +GFGDR+LSE+++LA KD KI+I AP ER YSTWIGGSIL
Sbjct: 298 LDLRKSLFGNIVLSGGSTLTRGFGDRLLSEIRRLAVKDVKIKIFAPPERKYSTWIGGSIL 357
Query: 519 ASLDTFRRMWISKREFEDDGYRALHRK 599
ASL TFR+MW+S E+++D +HRK
Sbjct: 358 ASLSTFRKMWVSAEEYQEDP-DIIHRK 383
>sp|P38673|ACTZ_NEUCR Actin-like protein (Centractin)
Length = 380
Score = 210 bits (534), Expect = 4e-54
Identities = 105/196 (53%), Positives = 147/196 (75%), Gaps = 7/196 (3%)
Frame = +3
Query: 9 HAIMRTDIAGRDVSRYLRLLLRKEGTHFQTSAEFEIVRQLKEKACFLSANPEMQEQ---- 176
++I R D+AGRDV+ YL+ LLRK G F TSAE E+VR +KE +++ +P +E+
Sbjct: 176 NSIRRIDVAGRDVTEYLQTLLRKSGYVFHTSAEKEVVRLIKESVTYVAHDPRKEEKEWAA 235
Query: 177 SEIDNTT---YPLPDGSKLRIGGAKFRAPELLFRPDLIGSECDGIHEVLAYSIQKSDMDL 347
+++D Y LPDG+KL+IG +FRAPE+LF P++IG E G+H+++ SI ++D+DL
Sbjct: 236 AKMDPAKIAEYVLPDGNKLKIGAERFRAPEILFDPEIIGLEYPGVHQIVVDSINRTDLDL 295
Query: 348 RQILYGNIVLSGGSTLFKGFGDRILSELKKLAPKDNKIRISAPQERLYSTWIGGSILASL 527
R+ LY NIVLSGGSTL KGFGDR+L+E++KLA KD +I+I AP ER YSTWIGGSILA L
Sbjct: 296 RRDLYSNIVLSGGSTLTKGFGDRLLTEVQKLAVKDMRIKIFAPPERKYSTWIGGSILAGL 355
Query: 528 DTFRRMWISKREFEDD 575
TFR+MW+S ++ ++
Sbjct: 356 STFRKMWVSIDDWHEN 371
>sp|P27131|ACT1_NAEFO Actin-1 (Actin I)
Length = 375
Score = 208 bits (530), Expect = 1e-53
Identities = 102/204 (50%), Positives = 143/204 (70%), Gaps = 5/204 (2%)
Frame = +3
Query: 3 LQHAIMRTDIAGRDVSRYLRLLLRKEGTHFQTSAEFEIVRQLKEKACFLSANPEMQ---- 170
L HAI+R D+AGRD++ YL +L + G F T+AE EIVR +KEK C+++ + E +
Sbjct: 171 LPHAILRLDLAGRDLTDYLMKILMERGYSFNTTAEREIVRDIKEKLCYIALDFEQEMKIA 230
Query: 171 -EQSEIDNTTYPLPDGSKLRIGGAKFRAPELLFRPDLIGSECDGIHEVLAYSIQKSDMDL 347
E S ++ + Y LPDG+ + +G +FR PE+LF+P+ IG E G+HE SI K D+D+
Sbjct: 231 AESSSVEKS-YELPDGNVITVGNERFRCPEVLFQPNFIGMEAAGVHETTFNSIGKCDIDI 289
Query: 348 RQILYGNIVLSGGSTLFKGFGDRILSELKKLAPKDNKIRISAPQERLYSTWIGGSILASL 527
R+ LYGN+VLSGG+T+F+G +R+ EL +AP KI++ AP ER YS WIGGSILASL
Sbjct: 290 RKDLYGNVVLSGGTTMFEGIAERMTKELTNMAPASMKIKVVAPPERKYSVWIGGSILASL 349
Query: 528 DTFRRMWISKREFEDDGYRALHRK 599
TF++MWI+K E+ED G +HRK
Sbjct: 350 STFQQMWITKEEYEDAGPGIVHRK 373
>sp|P02578|ACT1_ACACA Actin-1
Length = 375
Score = 208 bits (529), Expect = 2e-53
Identities = 104/203 (51%), Positives = 139/203 (68%), Gaps = 4/203 (1%)
Frame = +3
Query: 3 LQHAIMRTDIAGRDVSRYLRLLLRKEGTHFQTSAEFEIVRQLKEKACFLSANPEMQEQSE 182
L HAI+R D+AGRD++ YL +L + G F T+AE EIVR +KEK C+++ + E + +
Sbjct: 171 LPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMHTA 230
Query: 183 IDNT----TYPLPDGSKLRIGGAKFRAPELLFRPDLIGSECDGIHEVLAYSIQKSDMDLR 350
++ +Y LPDG + IG +FRAPE LF+P +G E GIHE SI K D+D+R
Sbjct: 231 ASSSALEKSYELPDGQVITIGNERFRAPEALFQPSFLGMESAGIHETTYNSIMKCDVDIR 290
Query: 351 QILYGNIVLSGGSTLFKGFGDRILSELKKLAPKDNKIRISAPQERLYSTWIGGSILASLD 530
+ LYGN+VLSGG+T+F G DR+ EL LAP KI+I AP ER YS WIGGSILASL
Sbjct: 291 KDLYGNVVLSGGTTMFPGIADRMQKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLS 350
Query: 531 TFRRMWISKREFEDDGYRALHRK 599
TF++MWISK E+++ G +HRK
Sbjct: 351 TFQQMWISKEEYDESGPSIVHRK 373
>sp|P53496|ACT11_ARATH Actin-11
Length = 377
Score = 208 bits (529), Expect = 2e-53
Identities = 106/205 (51%), Positives = 141/205 (68%), Gaps = 6/205 (2%)
Frame = +3
Query: 3 LQHAIMRTDIAGRDVSRYLRLLLRKEGTHFQTSAEFEIVRQLKEKACFLSANPEMQEQSE 182
L HAI+R D+AGRD++ YL +L + G F TSAE EIVR +KEK +++ + E ++ E
Sbjct: 173 LPHAILRLDLAGRDLTDYLMKILTERGYSFTTSAEREIVRDVKEKLAYIALDYE--QEME 230
Query: 183 IDNTT------YPLPDGSKLRIGGAKFRAPELLFRPDLIGSECDGIHEVLAYSIQKSDMD 344
NT+ Y LPDG + IGG +FR PE+LF+P L+G E GIHE SI K D+D
Sbjct: 231 TANTSSSVEKSYELPDGQVITIGGERFRCPEVLFQPSLVGMEAAGIHETTYNSIMKCDVD 290
Query: 345 LRQILYGNIVLSGGSTLFKGFGDRILSELKKLAPKDNKIRISAPQERLYSTWIGGSILAS 524
+R+ LYGNIVLSGG+T+F G DR+ E+ LAP KI++ AP ER YS WIGGSILAS
Sbjct: 291 IRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILAS 350
Query: 525 LDTFRRMWISKREFEDDGYRALHRK 599
L TF++MWI+K E+++ G +HRK
Sbjct: 351 LSTFQQMWIAKAEYDESGPSIVHRK 375
>sp|P10988|ACT1_PLAFA Actin-1 (Actin I)
Length = 376
Score = 208 bits (529), Expect = 2e-53
Identities = 103/203 (50%), Positives = 142/203 (69%), Gaps = 4/203 (1%)
Frame = +3
Query: 3 LQHAIMRTDIAGRDVSRYLRLLLRKEGTHFQTSAEFEIVRQLKEKACFLSAN--PEMQ-- 170
L HAIMR D+AGRD++ YL +L + G F TSAE EIVR +KEK C+++ N EM+
Sbjct: 172 LPHAIMRLDLAGRDLTEYLMKILHERGYGFSTSAEKEIVRDIKEKLCYIALNFDEEMKTS 231
Query: 171 EQSEIDNTTYPLPDGSKLRIGGAKFRAPELLFRPDLIGSECDGIHEVLAYSIQKSDMDLR 350
EQS +Y LPDG+ + +G +FR PE LF+P +G E GIH SI+K D+D+R
Sbjct: 232 EQSSDIEKSYELPDGNIITVGNERFRCPEALFQPSFLGKEAAGIHTTTFNSIKKCDVDIR 291
Query: 351 QILYGNIVLSGGSTLFKGFGDRILSELKKLAPKDNKIRISAPQERLYSTWIGGSILASLD 530
+ LYGNIVLSGG+T+++G G+R+ ++ LAP KI++ AP ER YS WIGGSIL+SL
Sbjct: 292 KDLYGNIVLSGGTTMYEGTGERLTRDITTLAPSTMKIKVVAPPERKYSVWIGGSILSSLS 351
Query: 531 TFRRMWISKREFEDDGYRALHRK 599
TF++MWI+K E+++ G +HRK
Sbjct: 352 TFQQMWITKEEYDESGPSIVHRK 374
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,971,058
Number of Sequences: 369166
Number of extensions: 2251105
Number of successful extensions: 6018
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5679
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7956112725
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)