Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_B03
(712 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q91YX5|LGAT1_MOUSE Acyl-CoA:lysophosphatidylglycerol acy... 124 3e-28
sp|Q92604|LGAT1_HUMAN Acyl-CoA:lysophosphatidylglycerol acy... 120 5e-27
sp|Q11087|YT73_CAEEL Hypothetical protein C01C10.3 in chrom... 69 9e-12
sp|P38226|YB42_YEAST Hypothetical 45.5 kDa protein in FAT1-... 37 0.068
sp|Q6IWY1|LPAT2_BRAOL 1-acyl-sn-glycerol-3-phosphate acyltr... 32 2.2
sp|Q08235|BRX1_YEAST Ribosome biogenesis protein BRX1 32 2.2
sp|P24870|CG23_YEAST G2/mitotic-specific cyclin-3 30 4.9
>sp|Q91YX5|LGAT1_MOUSE Acyl-CoA:lysophosphatidylglycerol acyltransferase 1
Length = 370
Score = 124 bits (310), Expect = 3e-28
Identities = 56/121 (46%), Positives = 83/121 (68%)
Frame = +2
Query: 2 NHQSTVDVPLIMHLLNFRKYLIFHSSWMLDEMFKYAPFGWVSLIRNDIFVKQGRETRNQQ 181
NHQ+T DV +M L + ++ W++D +FKY FG VSLI D F++QGR R+QQ
Sbjct: 100 NHQATGDVCTLMMCLQDKGPVVAQMMWLMDHIFKYTNFGIVSLIHGDFFIRQGRAYRDQQ 159
Query: 182 LSILPEKFKYSFSKLDRKWLIIFPEGGFFYKRKESSKEYALKNNYPKLDYVTLPRMGAVD 361
L +L + ++++ DRKW+++FPEGGF KR+E+S+ +A KNN P L +VTLPR GA +
Sbjct: 160 LLVLKKHLEHNYRSRDRKWIVLFPEGGFLRKRRETSQAFAKKNNLPFLTHVTLPRFGATN 219
Query: 362 V 364
+
Sbjct: 220 I 220
Score = 50.4 bits (119), Expect = 5e-06
Identities = 26/69 (37%), Positives = 42/69 (60%)
Frame = +1
Query: 505 IKYIIDITIAYNNIECPPSFVSMVLGSHSTCPVYVYYRVYNIGQIPVASSYELQSWMYKI 684
+++IID TIAY E P + +LG +V+YR++ IG +P+ + +L SW+Y+
Sbjct: 249 LQWIIDTTIAYPKAE-PIDIQTWILGYRKPTVTHVHYRIFPIGDVPLETE-DLTSWLYQR 306
Query: 685 YKEKNDRLS 711
+ EK D LS
Sbjct: 307 FIEKEDLLS 315
>sp|Q92604|LGAT1_HUMAN Acyl-CoA:lysophosphatidylglycerol acyltransferase 1
Length = 370
Score = 120 bits (300), Expect = 5e-27
Identities = 55/121 (45%), Positives = 80/121 (66%)
Frame = +2
Query: 2 NHQSTVDVPLIMHLLNFRKYLIFHSSWMLDEMFKYAPFGWVSLIRNDIFVKQGRETRNQQ 181
NHQ+T DV +M L + ++ W++D +FKY FG VSL+ D F++QGR R+QQ
Sbjct: 100 NHQATGDVCTLMMCLQDKGLVVAQMMWLMDHIFKYTNFGIVSLVHGDFFIRQGRSYRDQQ 159
Query: 182 LSILPEKFKYSFSKLDRKWLIIFPEGGFFYKRKESSKEYALKNNYPKLDYVTLPRMGAVD 361
L +L + + ++ DRKW+++FPEGGF KR+E+S+ +A KNN P L VTLPR GA
Sbjct: 160 LLLLKKHLENNYRSRDRKWIVLFPEGGFLRKRRETSQAFAKKNNLPFLTNVTLPRSGATK 219
Query: 362 V 364
+
Sbjct: 220 I 220
Score = 49.3 bits (116), Expect = 1e-05
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Frame = +1
Query: 484 ELSAKHK-IKYIIDITIAYNNIECPPSFVSMVLGSHSTCPVYVYYRVYNIGQIPVASSYE 660
EL +K K +++IID TIAY E P + +LG +V+YR++ I +P+ + +
Sbjct: 241 ELDSKSKGLQWIIDTTIAYPKAE-PIDIQTWILGYRKPTVTHVHYRIFPIKDVPLETD-D 298
Query: 661 LQSWMYKIYKEKNDRLS 711
L +W+Y+ + EK D LS
Sbjct: 299 LTTWLYQRFVEKEDLLS 315
>sp|Q11087|YT73_CAEEL Hypothetical protein C01C10.3 in chromosome X
Length = 391
Score = 69.3 bits (168), Expect = 9e-12
Identities = 39/118 (33%), Positives = 57/118 (48%)
Frame = +2
Query: 2 NHQSTVDVPLIMHLLNFRKYLIFHSSWMLDEMFKYAPFGWVSLIRNDIFVKQGRETRNQQ 181
NH +D ++M LN + + W++ ++KY P G + + FV G R+
Sbjct: 123 NHLGLLDHFVLMQSLNGKGSIRSRWMWVIYNIWKYTPLGVMWTSHGNFFVNGGVSKRDSV 182
Query: 182 LSILPEKFKYSFSKLDRKWLIIFPEGGFFYKRKESSKEYALKNNYPKLDYVTLPRMGA 355
LS + K SF K D W+I++PEG Y K S + +A KN LD PR GA
Sbjct: 183 LSSFRDHLKNSFYKYDYGWVIMYPEGSRLYLVKNSGRTFAEKNGLKPLDNCVYPRTGA 240
>sp|P38226|YB42_YEAST Hypothetical 45.5 kDa protein in FAT1-TCM62 intergenic region
Length = 397
Score = 36.6 bits (83), Expect = 0.068
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Frame = +1
Query: 496 KHKIKYIIDITIAYNNI------ECPPSFVSMVLGSHSTCPVYVYYRVYNIGQIPVASSY 657
K I+ + DITI Y+ + E S+ L V ++ R +++ IP+
Sbjct: 268 KPSIESLYDITIGYSGVKQEEYGELIYGLKSIFLEGKYPKLVDIHIRAFDVKDIPLEDEN 327
Query: 658 ELQSWMYKIYKEKN 699
E W+YKI+ EK+
Sbjct: 328 EFSEWLYKIWSEKD 341
>sp|Q6IWY1|LPAT2_BRAOL 1-acyl-sn-glycerol-3-phosphate acyltransferase 2 (Lysophosphatidyl
acyltransferase 2)
Length = 391
Score = 31.6 bits (70), Expect = 2.2
Identities = 31/128 (24%), Positives = 55/128 (42%), Gaps = 1/128 (0%)
Frame = +2
Query: 8 QSTVDVPLIMHLLNFRKYLIFHSSWMLDEMFKYAPFGWVSLIRNDIFVKQGRETRNQQLS 187
+S+ +P+I + F +YL +W DE S +++ + Q+L+
Sbjct: 120 KSSKFLPVIGWSMWFSEYLFLERNWAKDE----------STLKSGL----------QRLN 159
Query: 188 ILPEKFKYSFSKLDRKWLIIFPEGGFFYKRK-ESSKEYALKNNYPKLDYVTLPRMGAVDV 364
P F WL +F EG F + K ++++EYA + P V +PR
Sbjct: 160 DFPRPF----------WLALFVEGTRFTEAKLKAAQEYAATSQLPVPRNVLIPRTKGFVS 209
Query: 365 TV*NVKSY 388
V N++S+
Sbjct: 210 AVSNMRSF 217
>sp|Q08235|BRX1_YEAST Ribosome biogenesis protein BRX1
Length = 291
Score = 31.6 bits (70), Expect = 2.2
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = -2
Query: 312 LFFKAYSLLDSFLL*KNPPSGKIINHFLSNLEKL-YLNFSGSIDNC*FRVSRP 157
LFF+A D +L PP+G I ++ NL + LNF+G NC + SRP
Sbjct: 87 LFFEARKHQDLYLWLSKPPNGPTIKFYIQNLHTMDELNFTG---NC-LKGSRP 135
>sp|P24870|CG23_YEAST G2/mitotic-specific cyclin-3
Length = 427
Score = 30.4 bits (67), Expect = 4.9
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 9/81 (11%)
Frame = +1
Query: 463 VNKKSDYELSAKHKIKYIIDITIA-YNNIECPPSFVS--------MVLGSHSTCPVYVYY 615
++K DYE + KY+++ TI + + PS+++ ++LG + +VYY
Sbjct: 308 ISKADDYEHDTRTLAKYLLESTIMDHRLVSAQPSWLAAGAYFLSKIILGQNQWSLAHVYY 367
Query: 616 RVYNIGQIPVASSYELQSWMY 678
Y QI ++ L++ Y
Sbjct: 368 SNYTQEQILPLATIILENCRY 388
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,247,445
Number of Sequences: 369166
Number of extensions: 1480957
Number of successful extensions: 3668
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3667
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6267895215
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)