Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_A21-2
(157 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q03792|RIM13_YEAST Calpain-like protease 1 (Cysteine pro... 31 0.78
sp|P22348|PUR6_METSM Probable phosphoribosylaminoimidazole ... 28 8.7
>sp|Q03792|RIM13_YEAST Calpain-like protease 1 (Cysteine protease RIM13) (Calpain-7)
(Regulator of IME2 protein 13)
Length = 727
Score = 31.2 bits (69), Expect = 0.78
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -1
Query: 142 CSIKTGNNFSRYIFTV*KSSCYIGITSTNSLFGNV 38
C T NNFS + F+V K C+ + T SLF V
Sbjct: 423 CYSTTNNNFSIHSFSVVKEICFQRLKDTKSLFAKV 457
>sp|P22348|PUR6_METSM Probable phosphoribosylaminoimidazole carboxylase (AIR carboxylase)
(AIRC)
Length = 339
Score = 27.7 bits (60), Expect = 8.7
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -1
Query: 142 CSIKTGNNFSRYIFTV*KSSCYIGITSTNS 53
C I++G F Y+ T+ + +IGI S +S
Sbjct: 230 CPIRSGKKFRAYVNTMKNAKIFIGINSNSS 259
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,195,916
Number of Sequences: 369166
Number of extensions: 301768
Number of successful extensions: 815
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 68,354,980
effective HSP length: 24
effective length of database: 63,921,340
effective search space used: 1725876180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)