Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_A18
(596 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P32492|MYO4_YEAST Myosin-4 isoform 35 0.14
sp|O32269|TUAF_BACSU Teichuronic acid biosynthesis protein ... 30 3.5
sp|Q5AGV7|PFA4_CANAL Palmitoyltransferase PFA4 (Protein fat... 30 6.0
sp|P0C0M3|GH311_ORYSA Probable indole-3-acetic acid-amido s... 30 6.0
sp|Q9WTQ6|TRIB3_RAT Tribbles homolog 3 (TRB-3) (Neuronal ce... 29 7.9
sp|Q6BLY8|PFA4_DEBHA Palmitoyltransferase PFA4 (Protein fat... 29 7.9
>sp|P32492|MYO4_YEAST Myosin-4 isoform
Length = 1471
Score = 35.0 bits (79), Expect = 0.14
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 7/109 (6%)
Frame = +1
Query: 52 FLIQECILYRCIRDDNTDGFNQLCLASLVNRTCRL---IKSTFLELALNHNN---DIFVS 213
F + LY D D + L L N T ++ I ST+L + H + +IF
Sbjct: 1199 FAANQKTLYEANGGDEKDKLTLIYLNDLENETLKVFDKIYSTWLVKFMKHASAHIEIFDM 1258
Query: 214 KIREKMALNNEDHPYLLLMSAIQDNDALLVKY-LLDKHRINYFPDSDDY 357
+ EK+ N+ D + L + + + DA+L K+ ++D F D+ Y
Sbjct: 1259 VLNEKLFKNSGDEKFAKLFTFLNEFDAVLCKFQVVDSMHTKIFNDTLKY 1307
>sp|O32269|TUAF_BACSU Teichuronic acid biosynthesis protein tuaF
Length = 226
Score = 30.4 bits (67), Expect = 3.5
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +1
Query: 154 LIKS-TFLELALNHNNDIFVSKIREKMALNNEDHPYLLLMSAIQDND 291
L+KS +FL+ AL D V++I+EK+ +N E L L + +D D
Sbjct: 68 LLKSDSFLKEALPDEKDEDVAEIKEKLTINTESKSLLTLSYSDEDKD 114
>sp|Q5AGV7|PFA4_CANAL Palmitoyltransferase PFA4 (Protein fatty acyltransferase 4)
Length = 446
Score = 29.6 bits (65), Expect = 6.0
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Frame = -2
Query: 361 YCNHLNQ----ENNLSDVCPTNTLLEEHHCPELLTSEANKDDPHYLK 233
YC N ++ +C L +HHCP L N + PH+++
Sbjct: 115 YCKKCNNYKPPRSHHCKICQQCVLQMDHHCPWTLNCVGNNNLPHFMR 161
>sp|P0C0M3|GH311_ORYSA Probable indole-3-acetic acid-amido synthetase GH3.11
(Auxin-responsive GH3-like protein 11) (OsGH3-11)
Length = 591
Score = 29.6 bits (65), Expect = 6.0
Identities = 18/89 (20%), Positives = 45/89 (50%)
Frame = +1
Query: 169 FLELALNHNNDIFVSKIREKMALNNEDHPYLLLMSAIQDNDALLVKYLLDKHRINYFPDS 348
+L +N + +I K + ++ HPY+L ++ +++ L +Y+L+ R +
Sbjct: 44 YLSKFMNGSTNISAFKRHVPVVTYDKVHPYILRIATGEESSILCGEYILELLRSSGTSRG 103
Query: 349 DDYNMALAVAMSLDHRSFISSILKSLMKQ 435
+ M ++ LD R+++ S++ +M +
Sbjct: 104 EPRLMP-SILKDLDRRTYLYSLIMPIMNK 131
>sp|Q9WTQ6|TRIB3_RAT Tribbles homolog 3 (TRB-3) (Neuronal cell death inducible putative
kinase)
Length = 349
Score = 29.3 bits (64), Expect = 7.9
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 13/67 (19%)
Frame = -2
Query: 334 NLSDVC----PTNTLLEEHHCPELLTSEANKDDPHY----LKPFSLGFCL-----QKYHY 194
NL D C P ++L ++H CP + E P Y +SLG L +Y +
Sbjct: 197 NLEDACVMTGPDDSLWDKHACPAYVGPEILSSRPSYSGRAADVWSLGVALFTMLAGRYPF 256
Query: 193 YDSKPIL 173
DS+P L
Sbjct: 257 QDSEPAL 263
>sp|Q6BLY8|PFA4_DEBHA Palmitoyltransferase PFA4 (Protein fatty acyltransferase 4)
Length = 402
Score = 29.3 bits (64), Expect = 7.9
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 12/72 (16%)
Frame = -2
Query: 355 NHLNQENNLSDVCPTNTLLEEHHCPELLTSEANKDDPHYLK------------PFSLGFC 212
N+ + ++ C L +HHCP + + PH+L+ F LG
Sbjct: 85 NYKPERSHHCKTCNKCVLKMDHHCPWTYNCVGHNNLPHFLRFVFFLIVGMTYVLFQLG-- 142
Query: 211 LQKYHYYDSKPI 176
Q HYYDS +
Sbjct: 143 KQVLHYYDSSKL 154
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,476,286
Number of Sequences: 369166
Number of extensions: 1352693
Number of successful extensions: 2905
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2903
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4553075865
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)