Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_A08
(762 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8BFR5|EFTU_MOUSE Elongation factor Tu, mitochondrial pr... 230 4e-60
sp|P49410|EFTU_BOVIN Elongation factor Tu, mitochondrial pr... 227 3e-59
sp|P49411|EFTU_HUMAN Elongation factor Tu, mitochondrial pr... 226 7e-59
sp|Q9ZT91|EFTM_ARATH Elongation factor Tu, mitochondrial pr... 211 2e-54
sp|P33165|EFTU_BACFR Elongation factor Tu (EF-Tu) 208 1e-53
sp|P48865|EFTU_RICPR Elongation factor Tu (EF-Tu) 207 2e-53
sp|O50306|EFTU_BACST Elongation factor Tu (EF-Tu) 207 2e-53
sp|Q8CQ81|EFTU_STAES Elongation factor Tu (EF-Tu) >gi|71151... 207 3e-53
sp|Q5HIC7|EFTU_STAAC Elongation factor Tu (EF-Tu) >gi|54037... 206 4e-53
sp|Q8KT95|EFTU_RICTY Elongation factor Tu (EF-Tu) 206 7e-53
>sp|Q8BFR5|EFTU_MOUSE Elongation factor Tu, mitochondrial precursor
Length = 452
Score = 230 bits (586), Expect = 4e-60
Identities = 114/230 (49%), Positives = 162/230 (70%), Gaps = 2/230 (0%)
Frame = +1
Query: 1 YDGENIPFVTGSALLALEGKNEEIGKNKIIELLNKIDE-IPLPAREIDKPLFLPVEHVLS 177
Y GE P + GSAL ALE ++ E+G + +LL+ +D IP+P R++DKP LPVE V S
Sbjct: 208 YKGEETPVIVGSALCALEQRDPELGVKSVQKLLDAVDTYIPVPTRDLDKPFLLPVESVYS 267
Query: 178 ITGRGTVCTGRVERGVVNLGLAVEIIGYNASVKTTITGIEMFRQLLDKAVPGDQVGVLLR 357
I GRGTV TG +ERG++ G E++G+N +++T +TGIEMF + L++A GD +G L+R
Sbjct: 268 IPGRGTVVTGTLERGILKKGDECELLGHNKNIRTVVTGIEMFHKSLERAEAGDNLGALVR 327
Query: 358 SVKKEELRRGMVIISPKSVQMYNYVEAQIYLLTEAEGGRKKPSTKNFQSQIYSKSWDCPA 537
+K+E+LRRG+V++ P S+Q + VEAQ+Y+L++ EGGR KP +F ++S +WD
Sbjct: 328 GLKREDLRRGLVMVKPGSIQPHQKVEAQVYILSKEEGGRHKPFVSHFMPVMFSLTWDMAC 387
Query: 538 FTILPEGKELIMPGEDSSVKLHLQKKMVLEVGQRFTLRCG-ITLGYGVVT 684
ILP GKEL MPGED + L L++ M+LE GQRFTLR G T+G G+VT
Sbjct: 388 RVILPPGKELAMPGEDLKLSLILRQPMILEKGQRFTLRDGNKTIGTGLVT 437
>sp|P49410|EFTU_BOVIN Elongation factor Tu, mitochondrial precursor (EF-Tu)
Length = 452
Score = 227 bits (578), Expect = 3e-59
Identities = 114/230 (49%), Positives = 160/230 (69%), Gaps = 2/230 (0%)
Frame = +1
Query: 1 YDGENIPFVTGSALLALEGKNEEIGKNKIIELLNKIDE-IPLPAREIDKPLFLPVEHVLS 177
Y GE P + GSAL ALE ++ E+G + +LL+ +D IP+P R+++KP LPVE V S
Sbjct: 208 YKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYS 267
Query: 178 ITGRGTVCTGRVERGVVNLGLAVEIIGYNASVKTTITGIEMFRQLLDKAVPGDQVGVLLR 357
I GRGTV TG +ERG++ G E +G++ +++T +TGIEMF + LD+A GD +G L+R
Sbjct: 268 IPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEMFHKSLDRAEAGDNLGALVR 327
Query: 358 SVKKEELRRGMVIISPKSVQMYNYVEAQIYLLTEAEGGRKKPSTKNFQSQIYSKSWDCPA 537
+K+E+LRRG+V+ P S+Q + VEAQ+Y+LT+ EGGR KP +F ++S +WD
Sbjct: 328 GLKREDLRRGLVMAKPGSIQPHQKVEAQVYILTKEEGGRHKPFVSHFMPVMFSLTWDMAC 387
Query: 538 FTILPEGKELIMPGEDSSVKLHLQKKMVLEVGQRFTLRCG-ITLGYGVVT 684
ILP GKEL MPGED + L L++ M+LE GQRFTLR G T+G G+VT
Sbjct: 388 RIILPPGKELAMPGEDLKLTLILRQPMILEKGQRFTLRDGNRTIGTGLVT 437
>sp|P49411|EFTU_HUMAN Elongation factor Tu, mitochondrial precursor (EF-Tu) (P43)
Length = 452
Score = 226 bits (575), Expect = 7e-59
Identities = 112/233 (48%), Positives = 163/233 (69%), Gaps = 2/233 (0%)
Frame = +1
Query: 1 YDGENIPFVTGSALLALEGKNEEIGKNKIIELLNKIDE-IPLPAREIDKPLFLPVEHVLS 177
Y GE P + GSAL ALEG++ E+G + +LL+ +D IP+PAR+++KP LPVE V S
Sbjct: 208 YKGEETPVIVGSALCALEGRDPELGLKSVQKLLDAVDTYIPVPARDLEKPFLLPVEAVYS 267
Query: 178 ITGRGTVCTGRVERGVVNLGLAVEIIGYNASVKTTITGIEMFRQLLDKAVPGDQVGVLLR 357
+ GRGTV TG +ERG++ G E++G++ +++T +TGIEMF + L++A GD +G L+R
Sbjct: 268 VPGRGTVVTGTLERGILKKGDECELLGHSKNIRTVVTGIEMFHKSLERAEAGDNLGALVR 327
Query: 358 SVKKEELRRGMVIISPKSVQMYNYVEAQIYLLTEAEGGRKKPSTKNFQSQIYSKSWDCPA 537
+K+E+LRRG+V++ P S++ + VEAQ+Y+L++ EGGR KP +F ++S +WD
Sbjct: 328 GLKREDLRRGLVMVKPGSIKPHQKVEAQVYILSKEEGGRHKPFVSHFMPVMFSLTWDMAC 387
Query: 538 FTILPEGKELIMPGEDSSVKLHLQKKMVLEVGQRFTLRCG-ITLGYGVVTKLL 693
ILP KEL MPGED L L++ M+LE GQRFTLR G T+G G+VT L
Sbjct: 388 RIILPPEKELAMPGEDLKFNLILRQPMILEKGQRFTLRDGNRTIGTGLVTNTL 440
>sp|Q9ZT91|EFTM_ARATH Elongation factor Tu, mitochondrial precursor
Length = 454
Score = 211 bits (536), Expect = 2e-54
Identities = 108/236 (45%), Positives = 160/236 (67%), Gaps = 5/236 (2%)
Frame = +1
Query: 1 YDGENIPFVTGSALLALEGKNEEIGKNKIIELLNKIDE-IPLPAREIDKPLFLPVEHVLS 177
+ G++IP + GSAL AL+G N+EIG+ I++L++ +DE IP P R +DKP +P+E V S
Sbjct: 218 FPGDDIPIIRGSALSALQGTNDEIGRQAILKLMDAVDEYIPDPVRVLDKPFLMPIEDVFS 277
Query: 178 ITGRGTVCTGRVERGVVNLGLAVEIIGYNAS---VKTTITGIEMFRQLLDKAVPGDQVGV 348
I GRGTV TGR+E+GV+ +G VEI+G +K+T+TG+EMF+++LD GD VG+
Sbjct: 278 IQGRGTVATGRIEQGVIKVGEEVEILGLREGGVPLKSTVTGVEMFKKILDNGQAGDNVGL 337
Query: 349 LLRSVKKEELRRGMVIISPKSVQMYNYVEAQIYLLTEAEGGRKKPSTKNFQSQIYSKSWD 528
LLR +K+E+++RGMVI P S + Y EA+IY+LT+ EGGR N++ Q Y ++ D
Sbjct: 338 LLRGLKREDIQRGMVIAKPGSCKTYKKFEAEIYVLTKDEGGRHTAFFSNYRPQFYLRTAD 397
Query: 529 CPAFTILPEGKELIMPGEDSSVKLHLQKKMVLEVGQRFTLR-CGITLGYGVVTKLL 693
LPE +++MPG++ + L + LE GQRF LR G T+G GVV+K++
Sbjct: 398 ITGKVELPENVKMVMPGDNVTAVFELIMPVPLETGQRFALREGGRTVGAGVVSKVM 453
>sp|P33165|EFTU_BACFR Elongation factor Tu (EF-Tu)
Length = 394
Score = 208 bits (529), Expect = 1e-53
Identities = 102/233 (43%), Positives = 157/233 (67%), Gaps = 2/233 (0%)
Frame = +1
Query: 1 YDGENIPFVTGSALLALEGKNEEIGKNKIIELLNKIDE-IPLPAREIDKPLFLPVEHVLS 177
+DG+N P + GSAL AL G E ++K++EL+ +D IPLP R++DKP +PVE V S
Sbjct: 163 FDGDNTPIIQGSALGALNGV--EKWEDKVMELMEAVDTWIPLPPRDVDKPFLMPVEDVFS 220
Query: 178 ITGRGTVCTGRVERGVVNLGLAVEIIGYNASVKTTITGIEMFRQLLDKAVPGDQVGVLLR 357
ITGRGTV TGR+E GV+++G +EI+G K+ +TG+EMFR+LLD+ GD VG+LLR
Sbjct: 221 ITGRGTVATGRIETGVIHVGDEIEILGLGEDKKSVVTGVEMFRKLLDQGEAGDNVGLLLR 280
Query: 358 SVKKEELRRGMVIISPKSVQMYNYVEAQIYLLTEAEGGRKKPSTKNFQSQIYSKSWDCPA 537
V K E++RGMV+ P ++ ++ +A++Y+L + EGGR P ++ Q Y ++ DC
Sbjct: 281 GVDKNEIKRGMVLCKPGQIKPHSKFKAEVYILKKEEGGRHTPFHNKYRPQFYLRTMDCTG 340
Query: 538 FTILPEGKELIMPGEDSSVKLHLQKKMVLEVGQRFTLR-CGITLGYGVVTKLL 693
LPEG E++MPG++ ++ + L + L +G RF +R G T+G G +T+++
Sbjct: 341 EITLPEGTEMVMPGDNVTITVELIYPVALNIGLRFAIREGGRTVGAGQITEII 393
>sp|P48865|EFTU_RICPR Elongation factor Tu (EF-Tu)
Length = 394
Score = 207 bits (528), Expect = 2e-53
Identities = 104/232 (44%), Positives = 156/232 (67%), Gaps = 2/232 (0%)
Frame = +1
Query: 1 YDGENIPFVTGSALLALEGKNEEIGKNKIIELLNKIDE-IPLPAREIDKPLFLPVEHVLS 177
+ G IP + GSAL ALEGK E G+ I EL+N +D IP P R DKP +P+E V S
Sbjct: 163 FPGNEIPIIKGSALQALEGKPE--GEKAINELMNAVDSYIPQPIRATDKPFLMPIEDVFS 220
Query: 178 ITGRGTVCTGRVERGVVNLGLAVEIIGYNASVKTTITGIEMFRQLLDKAVPGDQVGVLLR 357
I+GRGTV TGRVE G++ +G +EI+G + KTT TG+EMFR+LLD+ GD VG+LLR
Sbjct: 221 ISGRGTVVTGRVESGIIKVGEEIEIVGLKNTQKTTCTGVEMFRKLLDEGQSGDNVGILLR 280
Query: 358 SVKKEELRRGMVIISPKSVQMYNYVEAQIYLLTEAEGGRKKPSTKNFQSQIYSKSWDCPA 537
K+EE+ RG V+ P S++ ++ EA++Y+L++ EGGR P T +++ Q Y ++ D
Sbjct: 281 GTKREEVERGQVLAKPGSIKPHDKFEAEVYVLSKEEGGRHTPFTNDYRPQFYFRTTDVTG 340
Query: 538 FTILPEGKELIMPGEDSSVKLHLQKKMVLEVGQRFTLR-CGITLGYGVVTKL 690
LP K+++MPG++++ + L K + ++ G +F++R G T+G G+VTK+
Sbjct: 341 TIKLPSDKQMVMPGDNATFSVELIKPIAMQEGLKFSIREGGRTVGAGIVTKI 392
>sp|O50306|EFTU_BACST Elongation factor Tu (EF-Tu)
Length = 395
Score = 207 bits (528), Expect = 2e-53
Identities = 108/234 (46%), Positives = 157/234 (67%), Gaps = 3/234 (1%)
Frame = +1
Query: 1 YDGENIPFVTGSALLALEGKNEEIGKNKIIELLNKIDE-IPLPAREIDKPLFLPVEHVLS 177
+ G+ +P + GSAL ALEG + + KIIEL+N +DE IP P RE+DKP +P+E V S
Sbjct: 163 FPGDEVPVIKGSALKALEGDPK--WEEKIIELMNAVDEYIPTPQREVDKPFMMPIEDVFS 220
Query: 178 ITGRGTVCTGRVERGVVNLGLAVEIIGYNASVK-TTITGIEMFRQLLDKAVPGDQVGVLL 354
ITGRGTV TGRVERG + +G VEIIG + K TT+TG+EMFR+LLD+A GD +G LL
Sbjct: 221 ITGRGTVATGRVERGTLKVGDPVEIIGLSDEPKATTVTGVEMFRKLLDQAEAGDNIGALL 280
Query: 355 RSVKKEELRRGMVIISPKSVQMYNYVEAQIYLLTEAEGGRKKPSTKNFQSQIYSKSWDCP 534
R V ++E+ RG V+ P S+ + +AQ+Y+LT+ EGGR P N++ Q Y ++ D
Sbjct: 281 RGVSRDEVERGQVLAKPGSITPHTKFKAQVYVLTKEEGGRHTPFFSNYRPQFYFRTTDVT 340
Query: 535 AFTILPEGKELIMPGEDSSVKLHLQKKMVLEVGQRFTLR-CGITLGYGVVTKLL 693
LPEG E++MPG++ + + L + +E G +F++R G T+G G V++++
Sbjct: 341 GIITLPEGVEMVMPGDNVEMTVELIAPIAIEEGTKFSIREGGRTVGAGSVSEII 394
>sp|Q8CQ81|EFTU_STAES Elongation factor Tu (EF-Tu)
sp|Q5HRK4|EFTU_STAEQ Elongation factor Tu (EF-Tu)
Length = 394
Score = 207 bits (526), Expect = 3e-53
Identities = 106/232 (45%), Positives = 158/232 (68%), Gaps = 2/232 (0%)
Frame = +1
Query: 1 YDGENIPFVTGSALLALEGKNEEIGKNKIIELLNKIDE-IPLPAREIDKPLFLPVEHVLS 177
+ G+++P + GSAL ALEG E + KI++L+ +D+ IP P R+ DKP +PVE V S
Sbjct: 163 FPGDDVPVIAGSALKALEGDAEY--EQKILDLMQAVDDYIPTPERDSDKPFMMPVEDVFS 220
Query: 178 ITGRGTVCTGRVERGVVNLGLAVEIIGYNASVKTTITGIEMFRQLLDKAVPGDQVGVLLR 357
ITGRGTV TGRVERG + +G VEIIG + + KTT+TG+EMFR+LLD A GD +G LLR
Sbjct: 221 ITGRGTVATGRVERGQIKVGEEVEIIGMHETSKTTVTGVEMFRKLLDYAEAGDNIGALLR 280
Query: 358 SVKKEELRRGMVIISPKSVQMYNYVEAQIYLLTEAEGGRKKPSTKNFQSQIYSKSWDCPA 537
V +E+++RG V+ +P S+ + +A++Y+L++ EGGR P N++ Q Y ++ D
Sbjct: 281 GVAREDVQRGQVLAAPGSITPHTKFKAEVYVLSKDEGGRHTPFFTNYRPQFYFRTTDVTG 340
Query: 538 FTILPEGKELIMPGEDSSVKLHLQKKMVLEVGQRFTLR-CGITLGYGVVTKL 690
LPEG E++MPG++ + + L + +E G RF++R G T+G GVVT++
Sbjct: 341 VVNLPEGTEMVMPGDNVEMTVELIAPIAIEDGTRFSIREGGRTVGSGVVTEI 392
>sp|Q5HIC7|EFTU_STAAC Elongation factor Tu (EF-Tu)
sp|P64029|EFTU_STAAW Elongation factor Tu (EF-Tu)
sp|Q6GBT9|EFTU_STAAS Elongation factor Tu (EF-Tu)
sp|Q6GJC0|EFTU_STAAR Elongation factor Tu (EF-Tu)
sp|P99152|EFTU_STAAN Elongation factor Tu (EF-Tu)
sp|P64028|EFTU_STAAM Elongation factor Tu (EF-Tu)
Length = 394
Score = 206 bits (525), Expect = 4e-53
Identities = 106/233 (45%), Positives = 158/233 (67%), Gaps = 2/233 (0%)
Frame = +1
Query: 1 YDGENIPFVTGSALLALEGKNEEIGKNKIIELLNKIDE-IPLPAREIDKPLFLPVEHVLS 177
+ G+++P + GSAL ALEG + + KI+EL+ +D IP P R+ DKP +PVE V S
Sbjct: 163 FPGDDVPVIAGSALKALEGDAQY--EEKILELMEAVDTYIPTPERDSDKPFMMPVEDVFS 220
Query: 178 ITGRGTVCTGRVERGVVNLGLAVEIIGYNASVKTTITGIEMFRQLLDKAVPGDQVGVLLR 357
ITGRGTV TGRVERG + +G VEIIG + + KTT+TG+EMFR+LLD A GD +G LLR
Sbjct: 221 ITGRGTVATGRVERGQIKVGEEVEIIGLHDTSKTTVTGVEMFRKLLDYAEAGDNIGALLR 280
Query: 358 SVKKEELRRGMVIISPKSVQMYNYVEAQIYLLTEAEGGRKKPSTKNFQSQIYSKSWDCPA 537
V +E+++RG V+ +P S+ + +A++Y+L++ EGGR P N++ Q Y ++ D
Sbjct: 281 GVAREDVQRGQVLAAPGSITPHTEFKAEVYVLSKDEGGRHTPFFSNYRPQFYFRTTDVTG 340
Query: 538 FTILPEGKELIMPGEDSSVKLHLQKKMVLEVGQRFTLR-CGITLGYGVVTKLL 693
LPEG E++MPG++ + + L + +E G RF++R G T+G GVVT+++
Sbjct: 341 VVHLPEGTEMVMPGDNVEMTVELIAPIAIEDGTRFSIREGGRTVGSGVVTEII 393
>sp|Q8KT95|EFTU_RICTY Elongation factor Tu (EF-Tu)
Length = 394
Score = 206 bits (523), Expect = 7e-53
Identities = 104/232 (44%), Positives = 156/232 (67%), Gaps = 2/232 (0%)
Frame = +1
Query: 1 YDGENIPFVTGSALLALEGKNEEIGKNKIIELLNKIDE-IPLPAREIDKPLFLPVEHVLS 177
+ G IP + GSAL ALEGK E G+ I EL+N +D IP P R DKP +P+E V S
Sbjct: 163 FPGNEIPIIKGSALQALEGKPE--GEKAINELMNAVDSYIPQPIRATDKPFLMPIEDVFS 220
Query: 178 ITGRGTVCTGRVERGVVNLGLAVEIIGYNASVKTTITGIEMFRQLLDKAVPGDQVGVLLR 357
I+GRGTV TGRVE G++ +G +EI+G + KTT TG+EMFR+LLD+ GD VG+LLR
Sbjct: 221 ISGRGTVVTGRVESGIIKVGEEIEIVGLKNTQKTTCTGVEMFRKLLDEGQSGDNVGILLR 280
Query: 358 SVKKEELRRGMVIISPKSVQMYNYVEAQIYLLTEAEGGRKKPSTKNFQSQIYSKSWDCPA 537
K+EE+ RG V+ P S++ ++ EA++Y+L++ EGGR P T +++ Q Y ++ D
Sbjct: 281 GTKREEVERGQVLAKPGSIKPHDKFEAEVYVLSKEEGGRHTPFTNDYRPQFYFRTTDVTG 340
Query: 538 FTILPEGKELIMPGEDSSVKLHLQKKMVLEVGQRFTLR-CGITLGYGVVTKL 690
LP K+++MPG++++ + L K + ++ G +F++R G T+G GVVT++
Sbjct: 341 TIKLPFDKQMVMPGDNATFSVELIKPIAMQEGLKFSIREGGRTVGAGVVTRI 392
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,742,708
Number of Sequences: 369166
Number of extensions: 1954265
Number of successful extensions: 6342
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5970
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7018522000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)