Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_P13
(767 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q61166|MARE1_MOUSE Microtubule-associated protein RP/EB ... 155 1e-37
sp|Q6PER3|MARE3_MOUSE Microtubule-associated protein RP/EB ... 153 6e-37
sp|Q66HR2|MARE1_RAT Microtubule-associated protein RP/EB fa... 152 7e-37
sp|Q9UPY8|MARE3_HUMAN Microtubule-associated protein RP/EB ... 152 1e-36
sp|Q3ZBD9|MARE1_BOVIN Microtubule-associated protein RP/EB ... 151 2e-36
sp|Q5ZLC7|MARE1_CHICK Microtubule-associated protein RP/EB ... 149 1e-35
sp|Q6V291|MARE1_COTCO Microtubule-associated protein RP/EB ... 147 2e-35
sp|Q5R7Z5|MARE1_PONPY Microtubule-associated protein RP/EB ... 147 3e-35
sp|Q15691|MARE1_HUMAN Microtubule-associated protein RP/EB ... 147 4e-35
sp|Q66T82|MARE1_COTJA Microtubule-associated protein RP/EB ... 147 4e-35
>sp|Q61166|MARE1_MOUSE Microtubule-associated protein RP/EB family member 1 (APC-binding
protein EB1) (End-binding protein 1) (EB1)
Length = 268
Score = 155 bits (391), Expect = 1e-37
Identities = 96/208 (46%), Positives = 128/208 (61%), Gaps = 8/208 (3%)
Frame = +1
Query: 16 PVSKLVKGKFQDNFEFVQWFKRFFDANYDGHEYDPLAARGGEIVQGTGRNAVKPSGDSLQ 195
PV KLVKGKFQDNFEFVQWFK+FFDANYDG EYDP+AAR G+ AV P SL
Sbjct: 92 PVDKLVKGKFQDNFEFVQWFKKFFDANYDGKEYDPVAARQGQ------ETAVAP---SLV 142
Query: 196 RPNYSAPRR--ASATNAITKPTAVKQSTAPKPAMIRPSAQPTQQSKVSPAGSHNSVTING 369
P S P++ S+T A +P A +++TA P A P K G NG
Sbjct: 143 APALSKPKKPLGSSTAAPQRPIATQRTTA------APKAGPGMVRKNPGVG-------NG 189
Query: 370 GDQAEVGKLRKAIESLTLQSEDDKTTIDNLMRERDFYFNKLRDIEVLCQE-DGEKNPVIA 546
D+A +L + ++ L K T+++L +ERDFYF KLR+IE++CQE +GE +PV+
Sbjct: 190 DDEA--AELMQQVKVL-------KLTVEDLEKERDFYFGKLRNIELICQENEGENDPVLQ 240
Query: 547 KVLEILYATEEGFAAPD-----DEPEEF 615
++++ILYAT+EGF PD +E EE+
Sbjct: 241 RIVDILYATDEGFVIPDEGGPQEEQEEY 268
>sp|Q6PER3|MARE3_MOUSE Microtubule-associated protein RP/EB family member 3 (End-binding
protein 3) (EB3) (EB1 protein family member 3) (EBF3)
(RP3)
sp|Q5XIT1|MARE3_RAT Microtubule-associated protein RP/EB family member 3 (End-binding
protein 3) (EB3) (EB1 protein family member 3) (EBF3)
(RP3)
Length = 281
Score = 153 bits (386), Expect = 6e-37
Identities = 93/204 (45%), Positives = 119/204 (58%), Gaps = 5/204 (2%)
Frame = +1
Query: 16 PVSKLVKGKFQDNFEFVQWFKRFFDANYDGHEYDPLAARGGEIVQGTGRNAVKPSGDSLQ 195
PV KLVKGKFQDNFEF+QWFK+FFDANYDG +Y+PL AR G+ V + S +
Sbjct: 92 PVEKLVKGKFQDNFEFIQWFKKFFDANYDGKDYNPLLARQGQDVAPPPNPGDQIFNKSKK 151
Query: 196 RPNYSAPRRASATNAITKPTAVKQSTAPKPAMIR---PSAQPTQQSKVSPAGSHNSVTIN 366
+ P+R S T T+ + S P ++R PSA+ N
Sbjct: 152 LIGTAVPQRTSPTGPKNMQTSGRLSNVAPPCILRKNPPSAR------------------N 193
Query: 367 GGDQAEVGKLRKAIESLTLQSEDDKTTIDNLMRERDFYFNKLRDIEVLCQE-DGEKNPVI 543
GG +A+ I L Q D K T+D L +ERDFYF+KLRDIE++CQE + E +PVI
Sbjct: 194 GGHEADA-----QILELNQQLLDLKLTVDGLEKERDFYFSKLRDIELICQEHESENSPVI 248
Query: 544 AKVLEILYATEEGFAAP-DDEPEE 612
+ ++ ILYATEEGFA P DDE EE
Sbjct: 249 SGIIGILYATEEGFAPPEDDEIEE 272
>sp|Q66HR2|MARE1_RAT Microtubule-associated protein RP/EB family member 1 (APC-binding
protein EB1) (End-binding protein 1) (EB1)
Length = 268
Score = 152 bits (385), Expect = 7e-37
Identities = 95/208 (45%), Positives = 127/208 (61%), Gaps = 8/208 (3%)
Frame = +1
Query: 16 PVSKLVKGKFQDNFEFVQWFKRFFDANYDGHEYDPLAARGGEIVQGTGRNAVKPSGDSLQ 195
PV KLVKGKFQDNFEFVQWFK+FFDANYDG EYDP+AAR G+ AV P SL
Sbjct: 92 PVDKLVKGKFQDNFEFVQWFKKFFDANYDGKEYDPVAARQGQ------ETAVAP---SLV 142
Query: 196 RPNYSAPRR--ASATNAITKPTAVKQSTAPKPAMIRPSAQPTQQSKVSPAGSHNSVTING 369
P S P++ S + A +P A +++TA P A P K G NG
Sbjct: 143 APALSKPKKPLGSGSAAPQRPIATQRTTA------APKAGPGMVRKNPGMG-------NG 189
Query: 370 GDQAEVGKLRKAIESLTLQSEDDKTTIDNLMRERDFYFNKLRDIEVLCQE-DGEKNPVIA 546
D+A +L + ++ L K T+++L +ERDFYF KLR+IE++CQE +GE +PV+
Sbjct: 190 DDEA--AELMQQVKVL-------KLTVEDLEKERDFYFGKLRNIELICQENEGENDPVLQ 240
Query: 547 KVLEILYATEEGFAAPD-----DEPEEF 615
++++ILYAT+EGF PD +E EE+
Sbjct: 241 RIVDILYATDEGFVIPDEGGPQEEQEEY 268
>sp|Q9UPY8|MARE3_HUMAN Microtubule-associated protein RP/EB family member 3 (End-binding
protein 3) (EB3) (EB1 protein family member 3) (EBF3)
(RP3)
Length = 281
Score = 152 bits (383), Expect = 1e-36
Identities = 92/204 (45%), Positives = 118/204 (57%), Gaps = 5/204 (2%)
Frame = +1
Query: 16 PVSKLVKGKFQDNFEFVQWFKRFFDANYDGHEYDPLAARGGEIVQGTGRNAVKPSGDSLQ 195
PV KLVKGKFQDNFEF+QWFK+FFDANYDG +Y+PL AR G+ V + S +
Sbjct: 92 PVEKLVKGKFQDNFEFIQWFKKFFDANYDGKDYNPLLARQGQDVAPPPNPGDQIFNKSKK 151
Query: 196 RPNYSAPRRASATNAITKPTAVKQSTAPKPAMIR---PSAQPTQQSKVSPAGSHNSVTIN 366
+ P+R S T T+ + S P ++R PSA+ N
Sbjct: 152 LIGTAVPQRTSPTGPKNMQTSGRLSNVAPPCILRKNPPSAR------------------N 193
Query: 367 GGDQAEVGKLRKAIESLTLQSEDDKTTIDNLMRERDFYFNKLRDIEVLCQE-DGEKNPVI 543
GG + + I L Q D K T+D L +ERDFYF+KLRDIE++CQE + E +PVI
Sbjct: 194 GGHETDA-----QILELNQQLVDLKLTVDGLEKERDFYFSKLRDIELICQEHESENSPVI 248
Query: 544 AKVLEILYATEEGFAAP-DDEPEE 612
+ ++ ILYATEEGFA P DDE EE
Sbjct: 249 SGIIGILYATEEGFAPPEDDEIEE 272
>sp|Q3ZBD9|MARE1_BOVIN Microtubule-associated protein RP/EB family member 1 (APC-binding
protein EB1) (End-binding protein 1) (EB1)
Length = 268
Score = 151 bits (381), Expect = 2e-36
Identities = 87/206 (42%), Positives = 119/206 (57%), Gaps = 6/206 (2%)
Frame = +1
Query: 16 PVSKLVKGKFQDNFEFVQWFKRFFDANYDGHEYDPLAARGGEIVQGTGRNAVKPSGDSLQ 195
PV KLVKGKFQDNFEFVQWFK+FFDANYDG EYDP+AAR G+ ++
Sbjct: 92 PVDKLVKGKFQDNFEFVQWFKKFFDANYDGKEYDPVAARQGQ--------------ETAM 137
Query: 196 RPNYSAPRRASATNAITKPTAVKQSTAPKPAMIRPSAQPTQQSKVSPAGSHNSVTINGGD 375
P+ AP A+ KP S++ P + + T K P + + GD
Sbjct: 138 APSLVAP-------ALNKPKKPLSSSSAAPQRPITTHRTTATPKAGPGVVRKNPGVGNGD 190
Query: 376 QAEVGKLRKAIESLTLQSEDDKTTIDNLMRERDFYFNKLRDIEVLCQE-DGEKNPVIAKV 552
E +L + + L K T+++L +ERDFYF KLR+IE++CQE +GE NPV+ ++
Sbjct: 191 D-EAAELMQQVNVL-------KLTVEDLEKERDFYFGKLRNIELICQENEGENNPVLQRI 242
Query: 553 LEILYATEEGFAAPD-----DEPEEF 615
++ILYAT+EGF PD +E EE+
Sbjct: 243 VDILYATDEGFVIPDEGGPQEEQEEY 268
>sp|Q5ZLC7|MARE1_CHICK Microtubule-associated protein RP/EB family member 1
Length = 258
Score = 149 bits (375), Expect = 1e-35
Identities = 89/201 (44%), Positives = 117/201 (58%), Gaps = 2/201 (0%)
Frame = +1
Query: 16 PVSKLVKGKFQDNFEFVQWFKRFFDANYDGHEYDPLAARGGEIVQGTGRNAVKPSGDSLQ 195
PV KLVKGKFQDNFEFVQWFK+FFDANYDG EYDP+AAR G
Sbjct: 92 PVDKLVKGKFQDNFEFVQWFKKFFDANYDGKEYDPVAAR---------------QGQETV 136
Query: 196 RPNYSAPRRASATNAITKPTAVKQSTAPKPAMIRPSAQPTQQSKVSPAGSHNSVTINGGD 375
PN AP + KP K+ AP+ ++ Q++ +P GS V GD
Sbjct: 137 APNLVAP-------VVNKP---KKPLAPQRPIV------AQRTPATPKGSTGMVKKAAGD 180
Query: 376 QAEVGKLRKAIESLTLQSEDDKTTIDNLMRERDFYFNKLRDIEVLCQE-DGEKNPVIAKV 552
G IE + + K T+++L +ERDFYF KLR+IE++CQE +GE +PV+ ++
Sbjct: 181 DESAG----LIEQINVL----KLTVEDLEKERDFYFGKLRNIELICQENEGENDPVLQRI 232
Query: 553 LEILYATEEGFAAPDD-EPEE 612
+EILYAT+EGF PD+ P+E
Sbjct: 233 VEILYATDEGFVIPDEGAPQE 253
>sp|Q6V291|MARE1_COTCO Microtubule-associated protein RP/EB family member 1
Length = 263
Score = 147 bits (372), Expect = 2e-35
Identities = 87/201 (43%), Positives = 113/201 (56%), Gaps = 2/201 (0%)
Frame = +1
Query: 16 PVSKLVKGKFQDNFEFVQWFKRFFDANYDGHEYDPLAARGGEIVQGTGRNAVKPSGDSLQ 195
PV KLVKGKFQDNFEFVQWFK+FFDANYDG EYDP+AAR G
Sbjct: 92 PVDKLVKGKFQDNFEFVQWFKKFFDANYDGKEYDPVAAR---------------QGQETV 136
Query: 196 RPNYSAPRRASATNAITKPTAVKQSTAPKPAMIRPSAQPTQQSKVSPAGSHNSVTINGGD 375
PN AP N KP + +P + Q++ +P G V GD
Sbjct: 137 APNLVAP----VMNKPKKPLGTGSAAPQRPIV-------AQRTPATPKGGTGMVKKAAGD 185
Query: 376 QAEVGKLRKAIESLTLQSEDDKTTIDNLMRERDFYFNKLRDIEVLCQE-DGEKNPVIAKV 552
G IE + + K T+++L +ERDFYF KLR+IE++CQE +GE +PV+ ++
Sbjct: 186 DESAG----LIEQINVL----KLTVEDLEKERDFYFGKLRNIELICQENEGENDPVLQRI 237
Query: 553 LEILYATEEGFAAPDD-EPEE 612
+EILYAT+EGF PD+ P+E
Sbjct: 238 VEILYATDEGFVIPDEGAPQE 258
>sp|Q5R7Z5|MARE1_PONPY Microtubule-associated protein RP/EB family member 1 (APC-binding
protein EB1) (End-binding protein 1) (EB1)
Length = 268
Score = 147 bits (371), Expect = 3e-35
Identities = 89/207 (42%), Positives = 122/207 (58%), Gaps = 7/207 (3%)
Frame = +1
Query: 16 PVSKLVKGKFQDNFEFVQWFKRFFDANYDGHEYDPLAARGGEIVQGTGRNAVKPSGDSLQ 195
PV KLVKGKFQDNFEFVQWFK+FFDANYDG +YDP+AAR G+ AV P SL
Sbjct: 92 PVDKLVKGKFQDNFEFVQWFKKFFDANYDGKDYDPVAARQGQ------ETAVAP---SLV 142
Query: 196 RPNYSAPRR-ASATNAITKPTAVKQSTAPKPAMIRPSAQPTQQSKVSPAGSHNSVTINGG 372
P + P++ S+++A + Q TA P K P + + G
Sbjct: 143 APALNKPKKPLSSSSAAPQRPISTQRTAAAP-------------KAGPGVVRKNPGVGNG 189
Query: 373 DQAEVGKLRKAIESLTLQSEDDKTTIDNLMRERDFYFNKLRDIEVLCQE-DGEKNPVIAK 549
D E +L + + L K T+++L +ERDFYF KLR+IE++CQE +GE +PV+ +
Sbjct: 190 DD-EAAELMQQVNVL-------KLTVEDLEKERDFYFGKLRNIELICQENEGENDPVLQR 241
Query: 550 VLEILYATEEGFAAPD-----DEPEEF 615
+++ILYAT+EGF PD +E EE+
Sbjct: 242 IVDILYATDEGFVIPDEGGPQEEQEEY 268
>sp|Q15691|MARE1_HUMAN Microtubule-associated protein RP/EB family member 1 (APC-binding
protein EB1) (End-binding protein 1) (EB1)
Length = 268
Score = 147 bits (370), Expect = 4e-35
Identities = 91/208 (43%), Positives = 126/208 (60%), Gaps = 8/208 (3%)
Frame = +1
Query: 16 PVSKLVKGKFQDNFEFVQWFKRFFDANYDGHEYDPLAARGGEIVQGTGRNAVKPSGDSLQ 195
PV KLVKGKFQDNFEFVQWFK+FFDANYDG +YDP+AAR G+ AV P SL
Sbjct: 92 PVDKLVKGKFQDNFEFVQWFKKFFDANYDGKDYDPVAARQGQ------ETAVAP---SLV 142
Query: 196 RPNYSAPRR--ASATNAITKPTAVKQSTAPKPAMIRPSAQPTQQSKVSPAGSHNSVTING 369
P + P++ S++ A +P + +++ A P A P K G NG
Sbjct: 143 APALNKPKKPLTSSSAAPQRPISTQRTAA------APKAGPGVVRKNPGVG-------NG 189
Query: 370 GDQAEVGKLRKAIESLTLQSEDDKTTIDNLMRERDFYFNKLRDIEVLCQE-DGEKNPVIA 546
D+A +L + + L K T+++L +ERDFYF KLR+IE++CQE +GE +PV+
Sbjct: 190 DDEA--AELMQQVNVL-------KLTVEDLEKERDFYFGKLRNIELICQENEGENDPVLQ 240
Query: 547 KVLEILYATEEGFAAPD-----DEPEEF 615
++++ILYAT+EGF PD +E EE+
Sbjct: 241 RIVDILYATDEGFVIPDEGGPQEEQEEY 268
>sp|Q66T82|MARE1_COTJA Microtubule-associated protein RP/EB family member 1
Length = 263
Score = 147 bits (370), Expect = 4e-35
Identities = 87/201 (43%), Positives = 113/201 (56%), Gaps = 2/201 (0%)
Frame = +1
Query: 16 PVSKLVKGKFQDNFEFVQWFKRFFDANYDGHEYDPLAARGGEIVQGTGRNAVKPSGDSLQ 195
PV KLVKGKFQDNFEFVQWFK+FFDANYDG EYDP+AAR G
Sbjct: 92 PVDKLVKGKFQDNFEFVQWFKKFFDANYDGKEYDPVAAR---------------QGQETV 136
Query: 196 RPNYSAPRRASATNAITKPTAVKQSTAPKPAMIRPSAQPTQQSKVSPAGSHNSVTINGGD 375
PN AP N KP + +P + Q++ +P G V GD
Sbjct: 137 APNLVAP----VMNKPKKPLGTGSAGPQRPIV-------AQRTPATPKGGTGMVKKAAGD 185
Query: 376 QAEVGKLRKAIESLTLQSEDDKTTIDNLMRERDFYFNKLRDIEVLCQE-DGEKNPVIAKV 552
G IE + + K T+++L +ERDFYF KLR+IE++CQE +GE +PV+ ++
Sbjct: 186 DESAG----LIEQINVL----KLTVEDLEKERDFYFGKLRNIELICQENEGENDPVLQRI 237
Query: 553 LEILYATEEGFAAPDD-EPEE 612
+EILYAT+EGF PD+ P+E
Sbjct: 238 VEILYATDEGFVIPDEGAPQE 258
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,715,535
Number of Sequences: 369166
Number of extensions: 1436358
Number of successful extensions: 5613
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5559
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7115329200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)