Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_P08
(778 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P41809|HKR1_YEAST Hansenula MRAKII killer toxin-resistan... 38 0.027
sp|P32323|AGA1_YEAST A-agglutinin attachment subunit precursor 35 0.23
sp|P39001|UME6_YEAST Transcriptional regulator UME6 (Negati... 35 0.30
sp|P41667|Y114_NPVAC Hypothetical 49.3 kDa protein in HE65-... 35 0.30
sp|Q12140|BSC1_YEAST Bypass of stop codon protein 1 35 0.30
sp|Q01811|VNSS_INSVN Nonstructural protein NS-S 34 0.39
sp|P40631|MLH_TETTH Micronuclear linker histone polyprotein... 34 0.39
sp|Q9ZVR7|PSKR_ARATH Putative phytosulfokine receptor precu... 34 0.39
sp|P14732|LAM2_CHICK Lamin B2 33 0.87
sp|P12630|BAR1_YEAST Barrierpepsin precursor (Extracellular... 33 1.1
>sp|P41809|HKR1_YEAST Hansenula MRAKII killer toxin-resistant protein 1 precursor
Length = 1802
Score = 38.1 bits (87), Expect = 0.027
Identities = 53/225 (23%), Positives = 94/225 (41%), Gaps = 3/225 (1%)
Frame = +2
Query: 32 NSTYTTISSNKPFLKRSN---SFDCLIKNDIKGKSKFLENVTKNISSEKFDYRNMAALPN 202
+ST +I+S K K S+ KN +K E ++ F Y + AA P+
Sbjct: 944 SSTQASITSPKNSAKISSLQSQLSSSTKNPYDTANKNTETSGRSTVVSNFLYTSSAAKPD 1003
Query: 203 FDNSELNWKFPSSQTEVIIEGQGSLSNSTHKISITRGMKPASHQTSLSTSQTNICTLIGT 382
N KF ++ TE+ ++S+S+H S++ P+SH + S +
Sbjct: 1004 ------NEKFSATPTEIT-----TISSSSHAYSLSI---PSSHNSVTGLSHNFV------ 1043
Query: 383 KDLIKSSSRGSLQKNHSSSSLNKIHIENKTNKTVNPFSDKQLYFSTFTNPKLFRPNIKSN 562
SS+ + +SSSS++ I + +T S+ Q ++FT+ +++N
Sbjct: 1044 -----DSSKSATSFGYSSSSISSIKLSKETIPASKSVSNTQERITSFTS------TLRAN 1092
Query: 563 IANLIRKYENSEFHPYSSSNNSTPKVTYDRNMTNYNSPSKFIFNK 697
+ + NS SS +S P ++ TN SK + K
Sbjct: 1093 SQSEKSEGRNSVGSLQSSHISSNPSLS-----TNTKVDSKSLSRK 1132
>sp|P32323|AGA1_YEAST A-agglutinin attachment subunit precursor
Length = 725
Score = 35.0 bits (79), Expect = 0.23
Identities = 29/138 (21%), Positives = 56/138 (40%)
Frame = +2
Query: 125 SKFLENVTKNISSEKFDYRNMAALPNFDNSELNWKFPSSQTEVIIEGQGSLSNSTHKISI 304
+ + VT +SS +L + S + S T + S+ST S
Sbjct: 163 ASIISPVTSTLSSTTSSNPTTTSLSSTSTSPSSTSTSPSSTSTSSSSTSTSSSSTSTSSS 222
Query: 305 TRGMKPASHQTSLSTSQTNICTLIGTKDLIKSSSRGSLQKNHSSSSLNKIHIENKTNKTV 484
+ P+S TS S + T+ + ++ +SS + S+S+ + + ++K+
Sbjct: 223 STSTSPSSTSTSSSLTSTSSSSTSTSQSSTSTSSSSTSTSPSSTSTSSSSTSTSPSSKST 282
Query: 485 NPFSDKQLYFSTFTNPKL 538
+ S +ST T+P L
Sbjct: 283 SASSTSTSSYSTSTSPSL 300
>sp|P39001|UME6_YEAST Transcriptional regulator UME6 (Negative transcriptional regulator
of IME2)
Length = 836
Score = 34.7 bits (78), Expect = 0.30
Identities = 29/111 (26%), Positives = 50/111 (45%)
Frame = +2
Query: 344 STSQTNICTLIGTKDLIKSSSRGSLQKNHSSSSLNKIHIENKTNKTVNPFSDKQLYFSTF 523
++S T + +GT + S+ R S + H ++ ++ N TN P S + + S+F
Sbjct: 510 ASSSTKLDDDLGTAAAVLSNMRSSPYRTHDKP-ISNVNDMNNTNALGVPAS--RPHSSSF 566
Query: 524 TNPKLFRPNIKSNIANLIRKYENSEFHPYSSSNNSTPKVTYDRNMTNYNSP 676
+ + RP ++ + NSE P SNNST D++ SP
Sbjct: 567 PSKGVLRP--------ILLRIHNSEQQPIFESNNSTAVFDEDQDQNQDLSP 609
>sp|P41667|Y114_NPVAC Hypothetical 49.3 kDa protein in HE65-PK2 intergenic region
Length = 424
Score = 34.7 bits (78), Expect = 0.30
Identities = 30/141 (21%), Positives = 60/141 (42%), Gaps = 3/141 (2%)
Frame = +2
Query: 182 NMAALPNFDNSELNWKFPSSQTEVIIE--GQGSLSNSTHKISITRGMKPASHQTSLSTSQ 355
N++ + + +N ++N + + IE + N I + M + H +++ Q
Sbjct: 192 NVSVVYHIENIQMNLENKLKPRSITIETVDKDKFENKHSDIEVCYVMNNSLHPQDVNSQQ 251
Query: 356 TNICTLIGTKDLIKSSS-RGSLQKNHSSSSLNKIHIENKTNKTVNPFSDKQLYFSTFTNP 532
T +C+ +++ +L + S S N E NK+V+ S +L F N
Sbjct: 252 TLMCSSFVELNVLPFCLYNDTLPDDQSMSVFNLYKFEQTKNKSVSKPS--RLGNVMFVNS 309
Query: 533 KLFRPNIKSNIANLIRKYENS 595
+ +P + I N+I Y N+
Sbjct: 310 LIDKPITRETIVNIINSYHNA 330
>sp|Q12140|BSC1_YEAST Bypass of stop codon protein 1
Length = 328
Score = 34.7 bits (78), Expect = 0.30
Identities = 32/139 (23%), Positives = 57/139 (41%), Gaps = 7/139 (5%)
Frame = +2
Query: 236 SSQTEVIIEGQGSLSNSTHKISITRGMKPASHQTSLSTSQTNICTLIGTKDLIKSSSRGS 415
S+ T + S+ST S T +S TS ST+ ++ + T SSS S
Sbjct: 174 STTTSSTTTSSTTTSSSTTSSSTTSSSTTSSSTTSSSTTSSSTTSSSTTSSSTTSSSTTS 233
Query: 416 LQKNHSSSSLNKIHIENKTNKTVNPFSDKQLYFSTFTN-------PKLFRPNIKSNIANL 574
SS++ + T+ TV S + F+T + ++R +++ L
Sbjct: 234 SSTTSSSTTSSSTKTSTTTSSTVKSSSTTSIDFTTSVDSHTSSSVADIYRSRTSTDVTTL 293
Query: 575 IRKYENSEFHPYSSSNNST 631
S F ++SS++S+
Sbjct: 294 AA--STSPFSSFTSSDSSS 310
>sp|Q01811|VNSS_INSVN Nonstructural protein NS-S
Length = 449
Score = 34.3 bits (77), Expect = 0.39
Identities = 57/260 (21%), Positives = 100/260 (38%), Gaps = 65/260 (25%)
Frame = +2
Query: 119 GKSKFLENVTKNISSEKFDYRNMAALPNFDNSELNWKFPSSQTEVIIEGQGSLSNSTHKI 298
GK FL K I F +P FD+ +LN+ F + E+++ SN+T+
Sbjct: 60 GKVGFLPTEEKEIIVRCF-------VPIFDDIDLNFSFSGNVVEILVR-----SNTTN-- 105
Query: 299 SITRGMKPASHQTSLST----------SQTNICTLIGTKD--------LIKSSSRGSLQ- 421
T G+K H LS+ + I + G K+ I+++++GSL
Sbjct: 106 --TNGVKHQGHLKVLSSQLLRMLEEQIAVPEITSRFGLKESDIFPPNNFIEAANKGSLSC 163
Query: 422 --------KNHSSSSLNKIHIENKT--------------------NKTVNPFSDKQLYFS 517
K ++ S+ K+ + + T N+TVN + K L S
Sbjct: 164 VKEVLFDVKYSNNQSMGKVSVLSPTRSVHEWLYTLKPVFNQSQTNNRTVNTLAVKSLAMS 223
Query: 518 T-------------FTNPKLFRPNIKSNIANLIRKYENSEFHPYSSSNNSTPKVTYDR-- 652
N K F+ ++ I +++ S F ++ S+ S+PK Y
Sbjct: 224 ATSDLMSDTHSFVRLNNNKPFKISLWMRIPKIMKSNTYSRF--FTLSDESSPKEYYISIQ 281
Query: 653 ---NMTNYNSPSKFIFNKSN 703
N N + ++ F++SN
Sbjct: 282 CLPNHNNVETVIEYNFDQSN 301
>sp|P40631|MLH_TETTH Micronuclear linker histone polyprotein (MIC LH) [Contains:
Micronuclear linker histone-alpha; Micronuclear linker
histone-beta; Micronuclear linker histone-delta;
Micronuclear linker histone-gamma]
Length = 633
Score = 34.3 bits (77), Expect = 0.39
Identities = 37/157 (23%), Positives = 62/157 (39%), Gaps = 11/157 (7%)
Frame = +2
Query: 278 SNSTHKISITRGMKPASHQTSLSTSQTNICTLIGTKDLIKSSSRGSLQKNHSSSSLNKIH 457
SN+TH+ + + ++ QT Q ++ K KSSS+G ++ S +K
Sbjct: 454 SNNTHQTADSSENASSTTQTRTRGRQREQKDMVNEKSNSKSSSKGKKNSKSNTRSKSKSK 513
Query: 458 IENKTNK--------TVNPFSDKQLYFSTFTNPKLFRPNIKSNIANLIRK-YENSEFHPY 610
+K+ K T N + + + K PN SN +I + E S
Sbjct: 514 SASKSRKNASKSKKDTTNHGRQTRSKSRSESKSKSEAPNKPSNKMEVIEQPKEESSDRKR 573
Query: 611 SSSNNSTPKVTYDRNMTNYNSPSKFIFN--KSNSSED 715
S + + K T D+ N + K K N++ED
Sbjct: 574 RESRSQSAKKTSDKKSKNRSDSKKMTAEDPKKNNAED 610
>sp|Q9ZVR7|PSKR_ARATH Putative phytosulfokine receptor precursor (Phytosulfokine LRR
receptor kinase)
Length = 1008
Score = 34.3 bits (77), Expect = 0.39
Identities = 41/156 (26%), Positives = 65/156 (41%), Gaps = 13/156 (8%)
Frame = +2
Query: 2 GEIVINTTD-DNSTYTTISSNKP------FLKRSNSFDCLIKNDIKGKSKFLENVTKNIS 160
GEI + T ++ T IS N+P F+KR+ S L N I G +E N+S
Sbjct: 477 GEIPKSLTKLESLTSRNISVNEPSPDFPFFMKRNESARALQYNQIFGFPPTIELGHNNLS 536
Query: 161 SEKFD-YRNMAALPNFDNSELNWKFPSSQTEVIIEGQGSL-----SNSTHKISITRGMKP 322
++ + N+ L FD L W S + G SL SN+ SI ++
Sbjct: 537 GPIWEEFGNLKKLHVFD---LKWNALSGSIPSSLSGMTSLEALDLSNNRLSGSIPVSLQQ 593
Query: 323 ASHQTSLSTSQTNICTLIGTKDLIKSSSRGSLQKNH 430
S + S + N+ +I + ++ S + NH
Sbjct: 594 LSFLSKFSVAYNNLSGVIPSGGQFQTFPNSSFESNH 629
>sp|P14732|LAM2_CHICK Lamin B2
Length = 600
Score = 33.1 bits (74), Expect = 0.87
Identities = 26/77 (33%), Positives = 36/77 (46%)
Frame = +2
Query: 233 PSSQTEVIIEGQGSLSNSTHKISITRGMKPASHQTSLSTSQTNICTLIGTKDLIKSSSRG 412
PSS+ V S S+ST + +RG + LS S T+ IGT + SSS
Sbjct: 387 PSSRVTVSRATSSSSSSSTSLVRSSRGKRRRIEAEELSGSGTSG---IGTGSISGSSSSS 443
Query: 413 SLQKNHSSSSLNKIHIE 463
S Q + +S+ I IE
Sbjct: 444 SFQMSQQASATGSISIE 460
>sp|P12630|BAR1_YEAST Barrierpepsin precursor (Extracellular "barrier" protein) (BAR
proteinase)
Length = 587
Score = 32.7 bits (73), Expect = 1.1
Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 9/126 (7%)
Frame = +2
Query: 236 SSQTEVIIEGQGSLSNSTHKISITRGM----KP----ASHQTSLSTSQTNICTLIGTKDL 391
S+ + +I E N + K+ TR KP A HQ++ + +QT+ T +
Sbjct: 453 STASSLIAETNVQSRNCSTKMPGTRSTTVLSKPTQNSAMHQSTGAVTQTSNETKLELSST 512
Query: 392 IKSSSRGSLQKNHSSSSLNKIHIENKTNKTVNP-FSDKQLYFSTFTNPKLFRPNIKSNIA 568
+ +S SL +S+S++K +K+ T +P ++ + TF + +RP K+ I
Sbjct: 513 MANSGSVSLP---TSNSIDKEFEHSKSQTTSDPSVAEHSTFNQTFVHETKYRPTHKTVIT 569
Query: 569 NLIRKY 586
+ KY
Sbjct: 570 ETVTKY 575
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,203,477
Number of Sequences: 369166
Number of extensions: 1531092
Number of successful extensions: 4828
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4775
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7260540000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)