Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_P07
(368 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P13706|GPDA_DROME Glycerol-3-phosphate dehydrogenase [NA... 68 6e-12
sp|P34517|GPDA_CAEEL Probable glycerol-3-phosphate dehydrog... 68 8e-12
sp|O97463|GPDA_DROKA Glycerol-3-phosphate dehydrogenase [NA... 68 8e-12
sp|Q27928|GPDA_DROPS Glycerol-3-phosphate dehydrogenase [NA... 66 3e-11
sp|Q27567|GPDA_DROEZ Glycerol-3-phosphate dehydrogenase [NA... 66 3e-11
sp|O57656|GPDA_FUGRU Glycerol-3-phosphate dehydrogenase [NA... 65 4e-11
sp|P07735|GPDA_DROVI Glycerol-3-phosphate dehydrogenase [NA... 65 6e-11
sp|Q27556|GPDA_DROAE Glycerol-3-phosphate dehydrogenase [NA... 65 6e-11
sp|P21695|GPDA_HUMAN Glycerol-3-phosphate dehydrogenase [NA... 58 6e-09
sp|O35077|GPDA_RAT Glycerol-3-phosphate dehydrogenase [NAD+... 58 8e-09
>sp|P13706|GPDA_DROME Glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic (GPD-C)
(GPDH-C)
Length = 363
Score = 68.2 bits (165), Expect = 6e-12
Identities = 32/84 (38%), Positives = 46/84 (54%)
Frame = +2
Query: 14 CYGSRNILAGMNLVKTSMTLSEIESKVLMGAQAEGAHTAAEVYEMLVSVDQQKNYPIIST 193
CYG RN V + T+ E+E ++L G + +G TA EV ML + + +P+ +
Sbjct: 266 CYGGRNRRVSEAFVTSGKTIEELEKEMLNGQKLQGPPTAEEVNYMLKNKGLEDKFPLFTA 325
Query: 194 VHKICIRQTPPNTLIVVAQNHPAH 265
+HKIC Q PN LI +NHP H
Sbjct: 326 IHKICTNQLKPNDLIDCIRNHPEH 349
>sp|P34517|GPDA_CAEEL Probable glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic
Length = 392
Score = 67.8 bits (164), Expect = 8e-12
Identities = 32/84 (38%), Positives = 46/84 (54%)
Frame = +2
Query: 14 CYGSRNILAGMNLVKTSMTLSEIESKVLMGAQAEGAHTAAEVYEMLVSVDQQKNYPIIST 193
CYG RN VKT +++E+E ++L G A+G TA EVY M+ +P+ +
Sbjct: 308 CYGGRNRKVCEAFVKTGKSMAEVEKELLNGQSAQGPLTAEEVYLMMHKTGLDAKFPLFTA 367
Query: 194 VHKICIRQTPPNTLIVVAQNHPAH 265
VHKIC + P L+ +NHP H
Sbjct: 368 VHKICAGEMKPAELVDCLRNHPEH 391
>sp|O97463|GPDA_DROKA Glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic (GPD-C)
(GPDH-C)
Length = 360
Score = 67.8 bits (164), Expect = 8e-12
Identities = 32/84 (38%), Positives = 46/84 (54%)
Frame = +2
Query: 14 CYGSRNILAGMNLVKTSMTLSEIESKVLMGAQAEGAHTAAEVYEMLVSVDQQKNYPIIST 193
CYG RN V + T+ E+E ++L G + +G TA EV ML + + +P+ +
Sbjct: 266 CYGGRNRRVSEAFVTSGKTIEELEKEMLNGQKLQGPPTAEEVNYMLKNKGLEDKFPLFTA 325
Query: 194 VHKICIRQTPPNTLIVVAQNHPAH 265
+HKICI Q P LI +NHP H
Sbjct: 326 IHKICINQLKPKDLIDCIRNHPEH 349
>sp|Q27928|GPDA_DROPS Glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic (GPD-C)
(GPDH-C)
Length = 353
Score = 65.9 bits (159), Expect = 3e-11
Identities = 31/84 (36%), Positives = 45/84 (53%)
Frame = +2
Query: 14 CYGSRNILAGMNLVKTSMTLSEIESKVLMGAQAEGAHTAAEVYEMLVSVDQQKNYPIIST 193
CYG RN V + T+ E+E ++L G + +G TA EV ML + + +P+ +
Sbjct: 266 CYGGRNRRVSEAFVTSGKTIEELEKEMLNGQKLQGPPTAEEVNYMLKNKKLEDKFPLFTA 325
Query: 194 VHKICIRQTPPNTLIVVAQNHPAH 265
+HKIC Q P LI +NHP H
Sbjct: 326 IHKICTNQLKPKDLIDCIRNHPEH 349
>sp|Q27567|GPDA_DROEZ Glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic (GPD-C)
(GPDH-C)
Length = 350
Score = 65.9 bits (159), Expect = 3e-11
Identities = 31/84 (36%), Positives = 45/84 (53%)
Frame = +2
Query: 14 CYGSRNILAGMNLVKTSMTLSEIESKVLMGAQAEGAHTAAEVYEMLVSVDQQKNYPIIST 193
CYG RN V + T+ E+E ++L G + +G TA EV ML + + +P+ +
Sbjct: 266 CYGGRNRRVSEAFVTSGKTIEELEKEMLNGQKLQGPPTAEEVNYMLKNKGLEDKFPLFTA 325
Query: 194 VHKICIRQTPPNTLIVVAQNHPAH 265
+HKIC Q P LI +NHP H
Sbjct: 326 IHKICTNQLKPKDLIDCIRNHPEH 349
>sp|O57656|GPDA_FUGRU Glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic (GPD-C)
(GPDH-C)
Length = 351
Score = 65.5 bits (158), Expect = 4e-11
Identities = 31/84 (36%), Positives = 47/84 (55%)
Frame = +2
Query: 14 CYGSRNILAGMNLVKTSMTLSEIESKVLMGAQAEGAHTAAEVYEMLVSVDQQKNYPIIST 193
CYG RN VKT ++ E+E ++L G + +G TAAEVY +L + +P+ +
Sbjct: 267 CYGGRNRKVAKAFVKTGKSIEELEKEMLEGQKLQGPATAAEVYRILKHKNLIDKFPLFNA 326
Query: 194 VHKICIRQTPPNTLIVVAQNHPAH 265
V++IC + P + I QNHP H
Sbjct: 327 VYQICYQGHPVSEFISCLQNHPEH 350
>sp|P07735|GPDA_DROVI Glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic (GPD-C)
(GPDH-C)
Length = 353
Score = 64.7 bits (156), Expect = 6e-11
Identities = 30/84 (35%), Positives = 45/84 (53%)
Frame = +2
Query: 14 CYGSRNILAGMNLVKTSMTLSEIESKVLMGAQAEGAHTAAEVYEMLVSVDQQKNYPIIST 193
CYG RN V + T+ ++E ++L G + +G TA EV ML + + +P+ +
Sbjct: 266 CYGGRNRRVSEAFVTSGKTIEDLEKEMLNGQKLQGPPTAEEVNYMLKNKGLEDKFPLFTA 325
Query: 194 VHKICIRQTPPNTLIVVAQNHPAH 265
+HKIC Q P LI +NHP H
Sbjct: 326 IHKICTNQLKPKDLIDCIRNHPEH 349
>sp|Q27556|GPDA_DROAE Glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic (GPD-C)
(GPDH-C)
Length = 350
Score = 64.7 bits (156), Expect = 6e-11
Identities = 30/84 (35%), Positives = 45/84 (53%)
Frame = +2
Query: 14 CYGSRNILAGMNLVKTSMTLSEIESKVLMGAQAEGAHTAAEVYEMLVSVDQQKNYPIIST 193
CYG RN V + T+ ++E ++L G + +G TA EV ML + + +P+ +
Sbjct: 266 CYGGRNRRVSEAFVTSGKTIEDLEKEMLNGQKLQGPPTAEEVNYMLKNKGLEDKFPLFTA 325
Query: 194 VHKICIRQTPPNTLIVVAQNHPAH 265
+HKIC Q P LI +NHP H
Sbjct: 326 IHKICTNQLKPKDLIDCIRNHPEH 349
>sp|P21695|GPDA_HUMAN Glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic (GPD-C)
(GPDH-C)
Length = 349
Score = 58.2 bits (139), Expect = 6e-09
Identities = 26/84 (30%), Positives = 41/84 (48%)
Frame = +2
Query: 14 CYGSRNILAGMNLVKTSMTLSEIESKVLMGAQAEGAHTAAEVYEMLVSVDQQKNYPIIST 193
CYG RN +T ++ ++E ++L G + +G TA E+Y +L +P+
Sbjct: 265 CYGGRNRKVAEAFARTGKSIEQLEKELLNGQKLQGPETARELYSILQHKGLVDKFPLFMA 324
Query: 194 VHKICIRQTPPNTLIVVAQNHPAH 265
V+K+C P I QNHP H
Sbjct: 325 VYKVCYEGQPVGEFIHCLQNHPEH 348
>sp|O35077|GPDA_RAT Glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic (GPD-C)
(GPDH-C)
Length = 349
Score = 57.8 bits (138), Expect = 8e-09
Identities = 25/84 (29%), Positives = 43/84 (51%)
Frame = +2
Query: 14 CYGSRNILAGMNLVKTSMTLSEIESKVLMGAQAEGAHTAAEVYEMLVSVDQQKNYPIIST 193
CYG RN +T ++ ++E ++L G + +G TA E++ +L +P+ +
Sbjct: 265 CYGGRNRKVAEAFARTGKSIEQLEKEMLNGQKLQGPQTARELHSILQHKGLVDKFPLFTA 324
Query: 194 VHKICIRQTPPNTLIVVAQNHPAH 265
V+K+C P +I QNHP H
Sbjct: 325 VYKVCYEGQPVGEIIRCLQNHPEH 348
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,705,235
Number of Sequences: 369166
Number of extensions: 674425
Number of successful extensions: 1421
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1421
length of database: 68,354,980
effective HSP length: 89
effective length of database: 51,913,565
effective search space used: 1713147645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)