Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_P03
(844 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q99M04|LIAS_MOUSE Lipoic acid synthetase, mitochondrial ... 416 e-116
sp|O43766|LIAS_HUMAN Lipoic acid synthetase, mitochondrial ... 414 e-115
sp|O13642|LIPA_SCHPO Probable lipoic acid synthetase, mitoc... 363 e-100
sp|P32875|LIP5_YEAST Lipoic acid synthetase, mitochondrial ... 355 7e-98
sp|Q9HN78|LIPA_HALSA Probable lipoyl synthase (Lipoic acid ... 298 1e-80
sp|Q9RWA4|LIPA_DEIRA Lipoyl synthase (Lipoic acid synthase)... 272 1e-72
sp|Q4JBV4|LIPA_SULAC Probable lipoyl synthase (Lipoic acid ... 260 3e-69
sp|Q97U63|LIPA_SULSO Probable lipoyl synthase (Lipoic acid ... 252 1e-66
sp|Q6L1L7|LIPA_PICTO Probable lipoyl synthase (Lipoic acid ... 248 2e-65
sp|Q8ERL8|LIPA_OCEIH Lipoyl synthase (Lipoic acid synthase)... 245 1e-64
>sp|Q99M04|LIAS_MOUSE Lipoic acid synthetase, mitochondrial precursor (Lip-syn) (Lipoate
synthase) (mLIP1)
Length = 373
Score = 416 bits (1069), Expect = e-116
Identities = 197/276 (71%), Positives = 230/276 (83%)
Frame = +3
Query: 15 SIKRVKGEHLHLPEWLKRSIPKGNNFSNLTKSLRNLNLHTVCEEARCPNIGECWGGGENK 194
++KR KGE L LP WLK IP G N++ L +LRNL+LHTVCEEARCPNIGECWGGGE
Sbjct: 64 NLKRQKGERLRLPPWLKTKIPMGKNYNKLKNTLRNLSLHTVCEEARCPNIGECWGGGEYA 123
Query: 195 TATATIMLLGDTCTRGCKFCSVKTSRTPPAPDPNEPLNTAIALAQWGLDYVVLTSVDRDD 374
TATATIML+GDTCTRGC+FCSVKT+R PP D NEP NTA A+A+WGLDYVVLTSVDRDD
Sbjct: 124 TATATIMLMGDTCTRGCRFCSVKTARNPPPLDANEPDNTAKAIAEWGLDYVVLTSVDRDD 183
Query: 375 LIDGGSNHFAETVKEIKKRNPNILVECLTPDFKGDLKCVETIVDSGLDVYAHNVETVKSL 554
+ DGG+ H A+TV +K+RNP ILVECLTPDF+GDL+ VE + SGLDVYAHNVETV L
Sbjct: 184 VADGGAEHIAKTVSCLKERNPKILVECLTPDFRGDLRAVEKVALSGLDVYAHNVETVPEL 243
Query: 555 QRFVRDHRANFEQSLNVLKHAKLYKSGLVTKTSLMLGLGETDQEVIDTLKTLREIGVDCL 734
QR VRD RANF+QSL VL+HAK + +V+KTS+MLGLGETD++V TLK LR VDCL
Sbjct: 244 QRKVRDPRANFDQSLRVLRHAKEVQPDVVSKTSIMLGLGETDEQVYATLKALRAADVDCL 303
Query: 735 TVGQYIQPTKRHLKVKEYVHPDKFKYWETMGNKLGF 842
T+GQY+QPTKRHLKV+EYV P+KFKYWE +GN+LGF
Sbjct: 304 TLGQYMQPTKRHLKVEEYVTPEKFKYWEKVGNELGF 339
>sp|O43766|LIAS_HUMAN Lipoic acid synthetase, mitochondrial precursor (Lip-syn) (Lipoate
synthase) (HUSSY-01)
Length = 372
Score = 414 bits (1063), Expect = e-115
Identities = 192/276 (69%), Positives = 228/276 (82%)
Frame = +3
Query: 15 SIKRVKGEHLHLPEWLKRSIPKGNNFSNLTKSLRNLNLHTVCEEARCPNIGECWGGGENK 194
++KR KGE L LP WLK IP G N++ L +LRNLNLHTVCEEARCPNIGECWGGGE
Sbjct: 65 NLKRQKGERLRLPPWLKTEIPMGKNYNKLKNTLRNLNLHTVCEEARCPNIGECWGGGEYA 124
Query: 195 TATATIMLLGDTCTRGCKFCSVKTSRTPPAPDPNEPLNTAIALAQWGLDYVVLTSVDRDD 374
TATATIML+GDTCTRGC+FCSVKT+R PP D +EP NTA A+A+WGLDYVVLTSVDRDD
Sbjct: 125 TATATIMLMGDTCTRGCRFCSVKTARNPPPLDASEPYNTAKAIAEWGLDYVVLTSVDRDD 184
Query: 375 LIDGGSNHFAETVKEIKKRNPNILVECLTPDFKGDLKCVETIVDSGLDVYAHNVETVKSL 554
+ DGG+ H A+TV +K+RNP ILVECLTPDF+GDLK +E + SGLDVYAHNVETV L
Sbjct: 185 MPDGGAEHIAKTVSYLKERNPKILVECLTPDFRGDLKAIEKVALSGLDVYAHNVETVPEL 244
Query: 555 QRFVRDHRANFEQSLNVLKHAKLYKSGLVTKTSLMLGLGETDQEVIDTLKTLREIGVDCL 734
Q VRD R NF+QSL VLKHAK + +++KTS+MLGLGE D++V T+K LRE VDCL
Sbjct: 245 QSKVRDPRVNFDQSLRVLKHAKKVQPDVISKTSIMLGLGENDEQVYATMKALREADVDCL 304
Query: 735 TVGQYIQPTKRHLKVKEYVHPDKFKYWETMGNKLGF 842
T+GQY+QPT+RHLKV+EY+ P+KFKYWE +GN+LGF
Sbjct: 305 TLGQYMQPTRRHLKVEEYITPEKFKYWEKVGNELGF 340
>sp|O13642|LIPA_SCHPO Probable lipoic acid synthetase, mitochondrial precursor (Lip-syn)
(Lipoate synthetase)
Length = 370
Score = 363 bits (931), Expect = e-100
Identities = 171/268 (63%), Positives = 206/268 (76%)
Frame = +3
Query: 39 HLHLPEWLKRSIPKGNNFSNLTKSLRNLNLHTVCEEARCPNIGECWGGGENKTATATIML 218
H LP WLK +P G NF+ + LR +LHTVCEEA+CPNIGECWGG + ATATIML
Sbjct: 67 HKRLPSWLKTKVPLGTNFNRIKHDLRGSHLHTVCEEAKCPNIGECWGGKDKSRATATIML 126
Query: 219 LGDTCTRGCKFCSVKTSRTPPAPDPNEPLNTAIALAQWGLDYVVLTSVDRDDLIDGGSNH 398
+GDTCTRGC+FCSVKTSR P DPNEP NTA A+ QW L Y+VLTSVDRDDL D G+NH
Sbjct: 127 MGDTCTRGCRFCSVKTSRRPGPLDPNEPENTAEAIKQWNLGYIVLTSVDRDDLTDLGANH 186
Query: 399 FAETVKEIKKRNPNILVECLTPDFKGDLKCVETIVDSGLDVYAHNVETVKSLQRFVRDHR 578
A+T+++IK++ P+ILVE LTPDF G + VE + SGLDV+AHNVETV+ L FVRD R
Sbjct: 187 IAKTIQKIKEKAPHILVEALTPDFSGRMDLVEIVAKSGLDVFAHNVETVEELTPFVRDRR 246
Query: 579 ANFEQSLNVLKHAKLYKSGLVTKTSLMLGLGETDQEVIDTLKTLREIGVDCLTVGQYIQP 758
A + QSL+VLKH K L+TKTS+MLGLGETD E++ TLK L E VD +T GQY++P
Sbjct: 247 ATYRQSLSVLKHVKKTCPHLITKTSIMLGLGETDAEILTTLKDLLEHNVDVVTFGQYMRP 306
Query: 759 TKRHLKVKEYVHPDKFKYWETMGNKLGF 842
TKRHLKV+EYVHP KF+YW+ + KLGF
Sbjct: 307 TKRHLKVQEYVHPKKFEYWKEVAEKLGF 334
>sp|P32875|LIP5_YEAST Lipoic acid synthetase, mitochondrial precursor (Lip-syn) (Lipoate
synthase)
Length = 414
Score = 355 bits (912), Expect = 7e-98
Identities = 168/265 (63%), Positives = 205/265 (77%)
Frame = +3
Query: 48 LPEWLKRSIPKGNNFSNLTKSLRNLNLHTVCEEARCPNIGECWGGGENKTATATIMLLGD 227
LP WLK IPKG N+ L ++ L L TVCEEARCPNIGECWGG + ATATIMLLGD
Sbjct: 120 LPRWLKVPIPKGTNYHKLKGDVKELGLSTVCEEARCPNIGECWGGKDKSKATATIMLLGD 179
Query: 228 TCTRGCKFCSVKTSRTPPAPDPNEPLNTAIALAQWGLDYVVLTSVDRDDLIDGGSNHFAE 407
TCTRGC+FCSVKT+RTP PDP EP NTA A+ +WGL YVVLT+VDRDDL+DGG+NH AE
Sbjct: 180 TCTRGCRFCSVKTNRTPSKPDPMEPENTAEAIKRWGLGYVVLTTVDRDDLVDGGANHLAE 239
Query: 408 TVKEIKKRNPNILVECLTPDFKGDLKCVETIVDSGLDVYAHNVETVKSLQRFVRDHRANF 587
TV++IK++ PN LVE L+ DF+GDLK V+ + GLDVYAHN+ETV+SL VRD RA +
Sbjct: 240 TVRKIKQKAPNTLVETLSGDFRGDLKMVDIMAQCGLDVYAHNLETVESLTPHVRDRRATY 299
Query: 588 EQSLNVLKHAKLYKSGLVTKTSLMLGLGETDQEVIDTLKTLREIGVDCLTVGQYIQPTKR 767
QSL+VL+ AK L+TKTS+MLGLGETD+++ TLK LR I D +T GQY++PTKR
Sbjct: 300 RQSLSVLERAKATVPSLITKTSIMLGLGETDEQITQTLKDLRNIQCDVVTFGQYMRPTKR 359
Query: 768 HLKVKEYVHPDKFKYWETMGNKLGF 842
H+KV EYV P+KF YW+ ++GF
Sbjct: 360 HMKVVEYVKPEKFDYWKERALEMGF 384
>sp|Q9HN78|LIPA_HALSA Probable lipoyl synthase (Lipoic acid synthase) (Lipoate synthase)
(Lipoyl-acyl-carrier protein synthase) (Sulfur insertion
protein lipA) (Lip-syn)
Length = 311
Score = 298 bits (764), Expect = 1e-80
Identities = 148/265 (55%), Positives = 194/265 (73%), Gaps = 1/265 (0%)
Frame = +3
Query: 51 PEWLKRSIPKGNNFSNLTKSLRNLNLHTVCEEARCPNIGECWGGGENKTATATIMLLGDT 230
PEWLK P G F+++ ++LR+ +LHTVCEEA CPN+GECW G + TAT ML+GD
Sbjct: 7 PEWLKMRPPSGERFTDIKETLRDNDLHTVCEEASCPNMGECWSGRDGP-GTATFMLMGDR 65
Query: 231 CTRGCKFCSVKTSRTPPAPDPNEPLNTAIALAQWGLDYVVLTSVDRDDLIDGGSNHFAET 410
C+RGC FC VKT P DP+EP N A ++A+ GLDYVVLTSVDRDDL D G+ HFA T
Sbjct: 66 CSRGCNFCDVKTGGMEPL-DPDEPANVAESVAEIGLDYVVLTSVDRDDLDDQGAGHFART 124
Query: 411 VKEIKKRNPNILVECLTPDFKGDLKCVETIVDSGLDVYAHNVETVKSLQRFVRDHRANFE 590
++EIK+R+P+ILVE L PDF+G+ V+ I+D+G DV AHN+ETV Q VRD RA +E
Sbjct: 125 IREIKERDPSILVEVLIPDFQGEKSLVQKIIDAGPDVIAHNIETVARRQVPVRDRRAGYE 184
Query: 591 QSLNVLKHAKLYKSGLVTKTSLMLGLGETDQEVIDTLKTLREIGVDCLTVGQYIQPTKRH 770
QSL+VL++ +S + TKTS+MLG+GE D EV TL LRE GVD +T+GQY+QP++ H
Sbjct: 185 QSLSVLEYV-TRESDIYTKTSIMLGVGEYDHEVYQTLGDLREAGVDVVTLGQYLQPSRSH 243
Query: 771 LKVKEYVHPDKFKYWETMG-NKLGF 842
L V +YVHP KF+ W+ + ++ GF
Sbjct: 244 LDVADYVHPQKFETWQRVAESEFGF 268
>sp|Q9RWA4|LIPA_DEIRA Lipoyl synthase (Lipoic acid synthase) (Lipoate synthase)
(Lipoyl-acyl-carrier protein synthase) (Sulfur insertion
protein lipA) (Lip-syn)
Length = 331
Score = 272 bits (695), Expect = 1e-72
Identities = 137/264 (51%), Positives = 178/264 (67%)
Frame = +3
Query: 51 PEWLKRSIPKGNNFSNLTKSLRNLNLHTVCEEARCPNIGECWGGGENKTATATIMLLGDT 230
PEWLK +IP G F+ + K ++ LHTVCEEA CPNIGECW G TAT ML+G
Sbjct: 31 PEWLKVTIPTGQVFTEVRKIVKEHRLHTVCEEAMCPNIGECWSRG-----TATFMLMGHI 85
Query: 231 CTRGCKFCSVKTSRTPPAPDPNEPLNTAIALAQWGLDYVVLTSVDRDDLIDGGSNHFAET 410
CTR C+FC+V T D +EP + A ++ L YVVLTSVDRDDL DGG+ HFA+T
Sbjct: 86 CTRACRFCAVDTGNPMGKLDLDEPRSVADSVRLMDLKYVVLTSVDRDDLPDGGAYHFAKT 145
Query: 411 VKEIKKRNPNILVECLTPDFKGDLKCVETIVDSGLDVYAHNVETVKSLQRFVRDHRANFE 590
VK IK+ NP VE LTPDF G+ CV+ ++DSG+D YA N+ETV+ L VRD RA+++
Sbjct: 146 VKAIKEVNPQTRVEALTPDFGGNTACVDLVLDSGVDTYAQNLETVRRLTHPVRDIRASYD 205
Query: 591 QSLNVLKHAKLYKSGLVTKTSLMLGLGETDQEVIDTLKTLREIGVDCLTVGQYIQPTKRH 770
++L+VL HAK + ++TKTSLMLGLGET +E+ + + R GVD LT GQY++PT H
Sbjct: 206 RTLSVLAHAKQARPDVITKTSLMLGLGETREEIREAMADCRAAGVDVLTFGQYLRPTMHH 265
Query: 771 LKVKEYVHPDKFKYWETMGNKLGF 842
L V+ Y+ P +F G +LGF
Sbjct: 266 LPVERYISPAEFDEIREEGMQLGF 289
>sp|Q4JBV4|LIPA_SULAC Probable lipoyl synthase (Lipoic acid synthase) (Lipoate synthase)
(Lipoyl-acyl-carrier protein synthase) (Sulfur insertion
protein lipA) (Lip-syn)
Length = 286
Score = 260 bits (665), Expect = 3e-69
Identities = 128/252 (50%), Positives = 181/252 (71%)
Frame = +3
Query: 87 NFSNLTKSLRNLNLHTVCEEARCPNIGECWGGGENKTATATIMLLGDTCTRGCKFCSVKT 266
NF L++ + + TVCEEA CPNI ECWG G TAT M++GD CTRGC+FC VK
Sbjct: 12 NFKKLSRIVSEKGISTVCEEALCPNIMECWGSG-----TATFMIMGDICTRGCRFCYVKK 66
Query: 267 SRTPPAPDPNEPLNTAIALAQWGLDYVVLTSVDRDDLIDGGSNHFAETVKEIKKRNPNIL 446
+ P D EP+ A A+ + GLDYVV+TSVDRDDL DGG++HF++ VK +K+ NP+++
Sbjct: 67 GK-PVLLDHEEPIKVAEAVREMGLDYVVITSVDRDDLADGGASHFSQVVKAVKEMNPDVI 125
Query: 447 VECLTPDFKGDLKCVETIVDSGLDVYAHNVETVKSLQRFVRDHRANFEQSLNVLKHAKLY 626
VE LTPDF G+ + VE ++ SG+DV+AHNVETV+SL VRD RA++EQSL VL +AK
Sbjct: 126 VEVLTPDFMGNKELVEKVIGSGVDVFAHNVETVRSLTPLVRDARASYEQSLRVLSYAK-- 183
Query: 627 KSGLVTKTSLMLGLGETDQEVIDTLKTLREIGVDCLTVGQYIQPTKRHLKVKEYVHPDKF 806
+V K+S++LGLGE+ +EV++T+K LR +GVD L + QY++P+ + L+VK+ + +++
Sbjct: 184 --NVVKKSSILLGLGESLEEVVETMKDLRNVGVDILVLSQYMRPSIKQLEVKKRYNMEEY 241
Query: 807 KYWETMGNKLGF 842
K E + LGF
Sbjct: 242 KELEKIAYSLGF 253
>sp|Q97U63|LIPA_SULSO Probable lipoyl synthase (Lipoic acid synthase) (Lipoate synthase)
(Lipoyl-acyl-carrier protein synthase) (Sulfur insertion
protein lipA) (Lip-syn)
Length = 285
Score = 252 bits (643), Expect = 1e-66
Identities = 122/258 (47%), Positives = 179/258 (69%)
Frame = +3
Query: 69 SIPKGNNFSNLTKSLRNLNLHTVCEEARCPNIGECWGGGENKTATATIMLLGDTCTRGCK 248
++ + NF + + ++ ++ TVCEEA CPNI ECWG G TAT M++G CTRGC+
Sbjct: 8 AVYENENFKRVAEIVKKKSIATVCEEALCPNIMECWGSG-----TATFMIMGSICTRGCR 62
Query: 249 FCSVKTSRTPPAPDPNEPLNTAIALAQWGLDYVVLTSVDRDDLIDGGSNHFAETVKEIKK 428
FC V + P D EP A A+ + LDYVV+TSVDRDDL DGG+ HFA VK +K+
Sbjct: 63 FCYVLKGKPSPLDD-EEPKRVAEAVKEMELDYVVITSVDRDDLSDGGAQHFANVVKTVKE 121
Query: 429 RNPNILVECLTPDFKGDLKCVETIVDSGLDVYAHNVETVKSLQRFVRDHRANFEQSLNVL 608
NP I+VE LTPDF+G++ V+ ++D+G+DV+AHNVETV+ L VRD RA++EQSLNVL
Sbjct: 122 LNPGIIVEVLTPDFRGNIDAVKKVIDAGVDVFAHNVETVRRLTPIVRDPRASYEQSLNVL 181
Query: 609 KHAKLYKSGLVTKTSLMLGLGETDQEVIDTLKTLREIGVDCLTVGQYIQPTKRHLKVKEY 788
K+A+ ++ K+S++LGLGET E+++T++ LR +GV L + QY++P+++ L+VK+
Sbjct: 182 KYAE----NVIKKSSILLGLGETWDEIVETMRDLRSVGVSILVLSQYMRPSRKQLEVKKR 237
Query: 789 VHPDKFKYWETMGNKLGF 842
++FK E + +GF
Sbjct: 238 YTLEEFKELEEIAYSMGF 255
>sp|Q6L1L7|LIPA_PICTO Probable lipoyl synthase (Lipoic acid synthase) (Lipoate synthase)
(Lipoyl-acyl-carrier protein synthase) (Sulfur insertion
protein lipA) (Lip-syn)
Length = 286
Score = 248 bits (632), Expect = 2e-65
Identities = 127/260 (48%), Positives = 173/260 (66%)
Frame = +3
Query: 63 KRSIPKGNNFSNLTKSLRNLNLHTVCEEARCPNIGECWGGGENKTATATIMLLGDTCTRG 242
K +P G ++ + +L NL+TVCEEA CPNI ECW G TAT M++G C+RG
Sbjct: 9 KVKLPSGERYTFIKSTLSARNLYTVCEEAHCPNIAECWESG-----TATFMIMGSNCSRG 63
Query: 243 CKFCSVKTSRTPPAPDPNEPLNTAIALAQWGLDYVVLTSVDRDDLIDGGSNHFAETVKEI 422
C+FC+V R P DP EP ++ LDYVV+TSVDRDDL D GS+HFA ++ +
Sbjct: 64 CRFCAVTHGRMLPL-DPMEPEKVYESVKMMNLDYVVITSVDRDDLPDKGSSHFAAVIRRL 122
Query: 423 KKRNPNILVECLTPDFKGDLKCVETIVDSGLDVYAHNVETVKSLQRFVRDHRANFEQSLN 602
K + I +E L PDF G K ++ I+D DV AHN+ETV+ L + VRD RA ++QSLN
Sbjct: 123 K--DLKIKIEVLIPDFSGVHKFIDKIIDERPDVIAHNIETVRRLTKTVRDPRAGYDQSLN 180
Query: 603 VLKHAKLYKSGLVTKTSLMLGLGETDQEVIDTLKTLREIGVDCLTVGQYIQPTKRHLKVK 782
VL++ K +S ++TK+S+MLGLGETD EVI+TL L + GVD +T+GQY++PTK+ L+VK
Sbjct: 181 VLRYVKS-RSNIITKSSIMLGLGETDDEVIETLHDLHDAGVDIVTIGQYLRPTKKQLEVK 239
Query: 783 EYVHPDKFKYWETMGNKLGF 842
EY ++FK E +GF
Sbjct: 240 EYSPMERFKNLEESAYSIGF 259
>sp|Q8ERL8|LIPA_OCEIH Lipoyl synthase (Lipoic acid synthase) (Lipoate synthase)
(Lipoyl-acyl-carrier protein synthase) (Sulfur insertion
protein lipA) (Lip-syn)
Length = 314
Score = 245 bits (626), Expect = 1e-64
Identities = 124/268 (46%), Positives = 177/268 (66%)
Frame = +3
Query: 39 HLHLPEWLKRSIPKGNNFSNLTKSLRNLNLHTVCEEARCPNIGECWGGGENKTATATIML 218
H+ P+WLK I ++ NL K +R+ L+TVCEEARCPN+ ECW ++ TAT M+
Sbjct: 7 HVRKPDWLKTRINTNKSYRNLKKLMRDNRLNTVCEEARCPNLHECW----SERKTATFMI 62
Query: 219 LGDTCTRGCKFCSVKTSRTPPAPDPNEPLNTAIALAQWGLDYVVLTSVDRDDLIDGGSNH 398
LGDTCTRGC+FC+VKT P D EP A ++ GL +VV+T+V RDDL DGG+
Sbjct: 63 LGDTCTRGCRFCAVKTG-LPNELDWGEPERVADSVTVMGLKHVVVTAVARDDLNDGGAAV 121
Query: 399 FAETVKEIKKRNPNILVECLTPDFKGDLKCVETIVDSGLDVYAHNVETVKSLQRFVRDHR 578
FAETV+ I+++NP +E L D KGD + + T++DSG D++ HN+ETV+ L + VR R
Sbjct: 122 FAETVRAIRRKNPGCTIEILPSDMKGDYESLHTLMDSGPDIFNHNIETVRRLTKRVR-AR 180
Query: 579 ANFEQSLNVLKHAKLYKSGLVTKTSLMLGLGETDQEVIDTLKTLREIGVDCLTVGQYIQP 758
A +++SL +L+ K TK+S+M+GLGE E+I + L VD +T+GQY+QP
Sbjct: 181 AMYDRSLELLRRVKEIAPNTPTKSSIMVGLGEEKDEIIQAMDDLLAHNVDIVTLGQYLQP 240
Query: 759 TKRHLKVKEYVHPDKFKYWETMGNKLGF 842
TK+HL+V Y HPD+F+ + + + GF
Sbjct: 241 TKKHLEVVRYYHPDEFEELKNIALEKGF 268
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,156,046
Number of Sequences: 369166
Number of extensions: 1909000
Number of successful extensions: 7045
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6710
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8245425915
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)