Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_O24
(553 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q7SXA5|FRIL_XENLA Ferritin light chain, oocyte isoform (... 61 2e-09
sp|P42577|FRIS_LYMST Soma ferritin 57 2e-08
sp|P49948|FRIH2_XENLA Ferritin heavy chain 2 (XL2-17) 57 3e-08
sp|P07798|FRI2_RANCA Ferritin, middle subunit (Ferritin M) ... 57 3e-08
sp|P17663|FRIH1_XENLA Ferritin heavy chain 1 55 1e-07
sp|P19975|FRI1_PEA Ferritin 1, chloroplast precursor 53 4e-07
sp|P07229|FRI1_RANCA Ferritin, higher subunit (Ferritin H) 53 4e-07
sp|P19132|FRIH_RAT Ferritin heavy chain (Ferritin H subunit) 53 6e-07
sp|P25915|FRIH_RABIT Ferritin heavy chain (Ferritin H subunit) 53 6e-07
sp|Q9XT73|FRIH_TRIVU Ferritin heavy chain (Ferritin H subunit) 53 6e-07
>sp|Q7SXA5|FRIL_XENLA Ferritin light chain, oocyte isoform (B-ferritin) (XeBF) (GV-LCH)
Length = 177
Score = 60.8 bits (146), Expect = 2e-09
Identities = 36/124 (29%), Positives = 64/124 (51%), Gaps = 3/124 (2%)
Frame = +3
Query: 6 FGRLFELIRQLEGRYTEELIRFQVNRGQKVTWYDVKPVEQHIESGKPVEIFQTILNFEKD 185
F + F + + + + E+ ++FQ RG +V DVK + E G + + LN EK
Sbjct: 50 FSKFFRELSEKKRDHAEDFLKFQNKRGGRVVLQDVKKPDDD-EWGNGTKAMEVALNLEKS 108
Query: 186 VHQLTLRLCKLAWEKNDLSLSSFLEDRVILRQTKVIRKRANQLRDLKR---SEDDMTPFL 356
++Q L L K+A + D + +LE + + K+I+K + L +L+R +E+ M +L
Sbjct: 109 INQAVLDLHKIATDHTDPHMQDYLEHEFLEEEVKLIKKLGDHLTNLRRVKAAEEGMGEYL 168
Query: 357 TSKL 368
KL
Sbjct: 169 FDKL 172
>sp|P42577|FRIS_LYMST Soma ferritin
Length = 174
Score = 57.4 bits (137), Expect = 2e-08
Identities = 34/120 (28%), Positives = 62/120 (51%)
Frame = +3
Query: 6 FGRLFELIRQLEGRYTEELIRFQVNRGQKVTWYDVKPVEQHIESGKPVEIFQTILNFEKD 185
F + F+ + E + E+L+++Q RG ++ D+K ++ E G +E Q L EK
Sbjct: 49 FHKFFKHQSEEEREHAEKLMKYQNKRGGRIVLQDIKKPDRD-EWGTGLEAMQVALQLEKS 107
Query: 186 VHQLTLRLCKLAWEKNDLSLSSFLEDRVILRQTKVIRKRANQLRDLKRSEDDMTPFLTSK 365
V+Q L L KL +D ++ FLE + Q K I++ ++ + +LKR + ++ K
Sbjct: 108 VNQSLLDLHKLCTSHDDAQMADFLESEFLEEQVKSIKELSDYITNLKRVGPGLGEYIFDK 167
>sp|P49948|FRIH2_XENLA Ferritin heavy chain 2 (XL2-17)
Length = 176
Score = 57.0 bits (136), Expect = 3e-08
Identities = 34/97 (35%), Positives = 52/97 (53%)
Frame = +3
Query: 39 EGRYTEELIRFQVNRGQKVTWYDVKPVEQHIESGKPVEIFQTILNFEKDVHQLTLRLCKL 218
E + E+ +++Q RG +V D+K E+ E G +E Q L EK V+Q L L KL
Sbjct: 59 EREHAEKFLKYQNKRGGRVVLQDIKKPERD-EWGNTLEATQAALQLEKTVNQALLDLHKL 117
Query: 219 AWEKNDLSLSSFLEDRVILRQTKVIRKRANQLRDLKR 329
A +K D L FLE + Q K +++ + + +LKR
Sbjct: 118 ASDKVDAHLCDFLESEYLEEQVKAMKQLGDYITNLKR 154
>sp|P07798|FRI2_RANCA Ferritin, middle subunit (Ferritin M) (Ferritin X) (Ferritin H')
Length = 176
Score = 57.0 bits (136), Expect = 3e-08
Identities = 39/112 (34%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
Frame = +3
Query: 39 EGRYTEELIRFQVNRGQKVTWYDVKPVEQHIESGKPVEIFQTILNFEKDVHQLTLRLCKL 218
E + E+ +++Q RG +V D+K E+ E G +E Q L EK V+Q L L KL
Sbjct: 59 EREHAEKFMKYQNKRGGRVVLQDIKKPERD-EWGNTLEAMQAALQLEKTVNQALLDLHKL 117
Query: 219 AWEKNDLSLSSFLEDRVILRQTKVIRKRANQLRDLKR---SEDDMTPFLTSK 365
A +K D L FLE + Q K I++ + + +LKR E+ M +L K
Sbjct: 118 ATDKVDPHLCDFLESEYLEEQVKDIKRIGDFITNLKRLGLPENGMGEYLFDK 169
>sp|P17663|FRIH1_XENLA Ferritin heavy chain 1
Length = 176
Score = 55.1 bits (131), Expect = 1e-07
Identities = 33/97 (34%), Positives = 51/97 (52%)
Frame = +3
Query: 39 EGRYTEELIRFQVNRGQKVTWYDVKPVEQHIESGKPVEIFQTILNFEKDVHQLTLRLCKL 218
E + E+ +++Q RG +V D+K E+ E +E Q L EK V+Q L L KL
Sbjct: 59 EREHAEKFLKYQNKRGGRVVLQDIKKPERD-EWSNTLEAMQAALQLEKTVNQALLDLHKL 117
Query: 219 AWEKNDLSLSSFLEDRVILRQTKVIRKRANQLRDLKR 329
A +K D L FLE + Q K +++ + + +LKR
Sbjct: 118 ASDKVDPQLCDFLESEYLEEQVKAMKELGDYITNLKR 154
>sp|P19975|FRI1_PEA Ferritin 1, chloroplast precursor
Length = 253
Score = 53.1 bits (126), Expect = 4e-07
Identities = 28/111 (25%), Positives = 57/111 (51%), Gaps = 3/111 (2%)
Frame = +3
Query: 6 FGRLFELIRQLEGRYTEELIRFQVNRGQKVTWYDVKPVE---QHIESGKPVEIFQTILNF 176
F + F+ + + E+L+++Q RG +V + +K V +H+E G + + L+
Sbjct: 122 FAKFFKESSEEHREHAEKLMKYQNTRGGRVVLHPIKDVPSEFEHVEKGDALYAMELALSL 181
Query: 177 EKDVHQLTLRLCKLAWEKNDLSLSSFLEDRVILRQTKVIRKRANQLRDLKR 329
EK ++ L + +A NDL ++ F+E + Q + I+K + + L+R
Sbjct: 182 EKLTNEKLLNVHSVAERNNDLEMTHFIEGEYLAEQVEAIKKISEYVAQLRR 232
>sp|P07229|FRI1_RANCA Ferritin, higher subunit (Ferritin H)
Length = 176
Score = 53.1 bits (126), Expect = 4e-07
Identities = 34/97 (35%), Positives = 51/97 (52%)
Frame = +3
Query: 39 EGRYTEELIRFQVNRGQKVTWYDVKPVEQHIESGKPVEIFQTILNFEKDVHQLTLRLCKL 218
E + E+L++ Q RG ++ DVK E+ E G +E Q L EK V+Q L L K+
Sbjct: 59 EREHAEKLMKDQNKRGGRIVLQDVKKPERD-EWGNTLEAMQAALQLEKTVNQALLDLHKV 117
Query: 219 AWEKNDLSLSSFLEDRVILRQTKVIRKRANQLRDLKR 329
+K D L FLE + Q K I++ + + +LKR
Sbjct: 118 GSDKVDPHLCDFLETEYLEEQVKSIKQLGDYITNLKR 154
>sp|P19132|FRIH_RAT Ferritin heavy chain (Ferritin H subunit)
Length = 182
Score = 52.8 bits (125), Expect = 6e-07
Identities = 38/125 (30%), Positives = 62/125 (49%), Gaps = 4/125 (3%)
Frame = +3
Query: 3 SFGRLFELIRQLEGRYTEELIRFQVNRGQKVTWYDVK-PVEQHIESGKPVEIFQTILNFE 179
+F + F E + E+L++ Q RG ++ D+K P ESG + + L+ E
Sbjct: 51 NFAKYFLHQSHEEREHAEKLMKLQNQRGGRIFLQDIKKPDRDDWESG--LNAMRCALHLE 108
Query: 180 KDVHQLTLRLCKLAWEKNDLSLSSFLEDRVILRQTKVIRKRANQLRDLKR---SEDDMTP 350
K V+Q L L KLA +KND L F+E + Q K I++ + + +L++ E M
Sbjct: 109 KSVNQSLLELHKLATDKNDPHLCDFIETHYLNEQVKSIKELGDHVTNLRKMGAPESGMAE 168
Query: 351 FLTSK 365
+L K
Sbjct: 169 YLFDK 173
>sp|P25915|FRIH_RABIT Ferritin heavy chain (Ferritin H subunit)
Length = 164
Score = 52.8 bits (125), Expect = 6e-07
Identities = 38/125 (30%), Positives = 62/125 (49%), Gaps = 4/125 (3%)
Frame = +3
Query: 3 SFGRLFELIRQLEGRYTEELIRFQVNRGQKVTWYDVK-PVEQHIESGKPVEIFQTILNFE 179
+F + F E + E+L++ Q RG ++ D+K P ESG + + L+ E
Sbjct: 32 NFAKYFLHQSHEEREHAEKLMKLQNQRGGRIFLQDIKKPEYDDWESG--LNAMECALHLE 89
Query: 180 KDVHQLTLRLCKLAWEKNDLSLSSFLEDRVILRQTKVIRKRANQLRDLKR---SEDDMTP 350
K V+Q L L KLA +KND L F+E + Q K I++ + + +L++ E M
Sbjct: 90 KSVNQSLLELHKLATDKNDPHLCDFIETHYLNEQVKSIKELGDHVTNLRKMGAPESGMAE 149
Query: 351 FLTSK 365
+L K
Sbjct: 150 YLFDK 154
>sp|Q9XT73|FRIH_TRIVU Ferritin heavy chain (Ferritin H subunit)
Length = 183
Score = 52.8 bits (125), Expect = 6e-07
Identities = 34/110 (30%), Positives = 58/110 (52%), Gaps = 1/110 (0%)
Frame = +3
Query: 3 SFGRLFELIRQLEGRYTEELIRFQVNRGQKVTWYDVK-PVEQHIESGKPVEIFQTILNFE 179
+F + F E + E+L++ Q RG ++ D+K P ESG + + L+ E
Sbjct: 51 NFAKYFLHQSHEEREHAEKLMKLQNQRGGRIFLQDIKKPDRDDWESG--LNAMECALHLE 108
Query: 180 KDVHQLTLRLCKLAWEKNDLSLSSFLEDRVILRQTKVIRKRANQLRDLKR 329
K+V+Q L L KLA +KND L F+E + Q K I++ + + +L++
Sbjct: 109 KNVNQSLLELHKLATDKNDPHLCDFIETHYLDEQVKAIKQLGDHVTNLRK 158
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,471,840
Number of Sequences: 369166
Number of extensions: 886658
Number of successful extensions: 2448
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2448
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3882260660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)