Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_O23
(560 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q75DA4|NOG2_ASHGO Nucleolar GTP-binding protein 2 39 0.009
sp|Q6CSP9|NOG2_KLULA Nucleolar GTP-binding protein 2 35 0.13
sp|Q6FWS1|NOG2_CANGA Nucleolar GTP-binding protein 2 35 0.17
sp|Q09205|SRA3_CAEEL Serpentine receptor class alpha-3 (Pro... 34 0.22
sp|P53742|NOG2_YEAST Nucleolar GTP-binding protein 2 33 0.48
sp|P15583|NU5M_LEITA NADH-ubiquinone oxidoreductase chain 5... 33 0.48
sp|Q6C036|NOG2_YARLI Nucleolar GTP-binding protein 2 32 1.1
sp|Q21086|GNL3_CAEEL Putative guanine nucleotide binding pr... 32 1.4
sp|O14236|NOG2_SCHPO Nucleolar GTP-binding protein 2 31 1.8
sp|P96604|YDBI_BACSU Hypothetical UPF0118 protein ydbI 29 7.0
>sp|Q75DA4|NOG2_ASHGO Nucleolar GTP-binding protein 2
Length = 502
Score = 38.9 bits (89), Expect = 0.009
Identities = 16/31 (51%), Positives = 21/31 (67%)
Frame = +1
Query: 4 VAKEILKDFNTGKLVWYVKPENYDNSKETLK 96
VAK++L DFN GK+ W+V P + D ET K
Sbjct: 448 VAKQVLNDFNRGKIPWFVSPPDRDPQPETSK 478
>sp|Q6CSP9|NOG2_KLULA Nucleolar GTP-binding protein 2
Length = 513
Score = 35.0 bits (79), Expect = 0.13
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +1
Query: 4 VAKEILKDFNTGKLVWYVKPENYDNSKE 87
V+K+IL DFN GK+ W+V P D +E
Sbjct: 448 VSKQILNDFNRGKIPWFVPPPEKDKIEE 475
>sp|Q6FWS1|NOG2_CANGA Nucleolar GTP-binding protein 2
Length = 494
Score = 34.7 bits (78), Expect = 0.17
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 4 VAKEILKDFNTGKLVWYVKPENYDNSKETLKDFDNKNWLKKQ 129
V+K+IL DFN GK+ W+V P + K+ D + K Q
Sbjct: 449 VSKQILNDFNRGKIPWFVIPPEKEEDKKRKLDEEEVKSAKMQ 490
>sp|Q09205|SRA3_CAEEL Serpentine receptor class alpha-3 (Protein sra-3)
Length = 329
Score = 34.3 bits (77), Expect = 0.22
Identities = 28/91 (30%), Positives = 38/91 (41%), Gaps = 1/91 (1%)
Frame = -3
Query: 321 CSIFFDIARLLFLLF-IVDILKFFIAITVFHFPFVILTRLIXXXXXXXXXXXXLNSCQLC 145
C+ +IARL L F I ++ F + IT F F L + C
Sbjct: 6 CASHLEIARLESLNFKISQLIYFVLIITTLFFTFFALKVI-------------QKKCIFQ 52
Query: 144 FFNRSLFFQPIFIVEIFQRFLGIVVVFRLYI 52
+ L +Q +F I Q FLGI +V RL I
Sbjct: 53 LSTKILLYQNLFSANIHQIFLGITIVERLNI 83
>sp|P53742|NOG2_YEAST Nucleolar GTP-binding protein 2
Length = 486
Score = 33.1 bits (74), Expect = 0.48
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +1
Query: 4 VAKEILKDFNTGKLVWYVKPENYDNSKETLK 96
V+K+IL DFN GK+ W+V P + ++ K
Sbjct: 449 VSKQILNDFNRGKIPWFVLPPEKEGEEKPKK 479
>sp|P15583|NU5M_LEITA NADH-ubiquinone oxidoreductase chain 5 (NADH dehydrogenase subunit
5)
Length = 101
Score = 33.1 bits (74), Expect = 0.48
Identities = 18/37 (48%), Positives = 25/37 (67%)
Frame = -3
Query: 327 LFCSIFFDIARLLFLLFIVDILKFFIAITVFHFPFVI 217
L+ + FFDIA LF +FI+DI+KF+I V + F I
Sbjct: 4 LYYASFFDIA--LFTVFIIDIIKFYILSGVIFYFFNI 38
>sp|Q6C036|NOG2_YARLI Nucleolar GTP-binding protein 2
Length = 509
Score = 32.0 bits (71), Expect = 1.1
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
Frame = +1
Query: 4 VAKEILKDFNTGKLVWYVKP---ENYDNSK 84
+AK IL DFN GK+ W+V P E+ +N K
Sbjct: 441 IAKLILNDFNRGKIPWFVPPPQAEDMENVK 470
>sp|Q21086|GNL3_CAEEL Putative guanine nucleotide binding protein-like 3 homolog
(Nucleostemin-1)
Length = 556
Score = 31.6 bits (70), Expect = 1.4
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 7 AKEILKDFNTGKLVWYVKPENYDNSKETL 93
AK +L D+NTGKL +Y P +KE +
Sbjct: 395 AKRVLNDWNTGKLRYYTHPPEQGTAKEDI 423
>sp|O14236|NOG2_SCHPO Nucleolar GTP-binding protein 2
Length = 537
Score = 31.2 bits (69), Expect = 1.8
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +1
Query: 1 TVAKEILKDFNTGKLVWYVKPENYDNSKETL 93
+VAK +L DF GK+ W++ P+ +S + +
Sbjct: 443 SVAKMVLNDFMRGKIPWFIGPKGLSSSNDEI 473
>sp|P96604|YDBI_BACSU Hypothetical UPF0118 protein ydbI
Length = 350
Score = 29.3 bits (64), Expect = 7.0
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -3
Query: 345 ILLFTSLFCSIFFDIARLLFLLFIVDILKFFIAITVFHFP 226
I F S F F + F++ +V+ + FIA+ + HFP
Sbjct: 188 IAFFGSKFARTFGKVLEAQFIIALVNCILTFIALWIMHFP 227
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,952,335
Number of Sequences: 369166
Number of extensions: 756384
Number of successful extensions: 2004
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2004
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4029688280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)