Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_O22
(625 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P50442|GATM_RAT Glycine amidinotransferase, mitochondria... 207 2e-53
sp|Q9D964|GATM_MOUSE Glycine amidinotransferase, mitochondr... 207 2e-53
sp|P50441|GATM_PIG Glycine amidinotransferase (L-arginine:g... 207 2e-53
sp|P50440|GATM_HUMAN Glycine amidinotransferase, mitochondr... 205 9e-53
sp|Q54258|STRB1_STRGA Inosamine-phosphate amidinotransferas... 69 7e-12
sp|P08078|STRB1_STRGR Inosamine-phosphate amidinotransferas... 59 1e-08
sp|Q54264|STRB2_STRGA Putative inosamine-phosphate amidinot... 52 1e-06
sp|P29780|STRB2_STRGR Putative inosamine-phosphate amidinot... 51 2e-06
sp|Q9Y8N2|Y2601_AERPE Hypothetical protein APE2601 34 0.26
sp|O53237|LEU2_MYCTU 3-isopropylmalate dehydratase large su... 33 0.77
>sp|P50442|GATM_RAT Glycine amidinotransferase, mitochondrial precursor
(L-arginine:glycine amidinotransferase) (Transamidinase)
(AT)
Length = 423
Score = 207 bits (527), Expect = 2e-53
Identities = 98/161 (60%), Positives = 123/161 (76%)
Frame = +3
Query: 15 DIFAHVSQVSNNSGIEWVRRHLAPKGIRVHALNFVDPKPMHIDTTLFTPRPGVAITCPDR 194
DIFA SQV+N GIEW+RRHLAP RVH ++F DP PMHID T PG+ ++ PDR
Sbjct: 264 DIFAQRSQVTNYLGIEWMRRHLAPD-YRVHIISFKDPNPMHIDATFNIIGPGLVLSNPDR 322
Query: 195 PCLQIGLFKKAGWDVVVAPYPDIPKNFPYYISSQWLSLNVVMLDEKRVLVEKDEVGIQKL 374
PC QI LFKKAGW +V P P IP + P ++SS+WLS+NV+MLDEKRV+V+ +EV IQK+
Sbjct: 323 PCHQIDLFKKAGWTIVTPPTPVIPDDHPLWMSSKWLSMNVLMLDEKRVMVDANEVPIQKM 382
Query: 375 FEKVGIKSVKVPFKHCFSIGGGIHCWTSDVRRRGDLQNYFD 497
FEK+GI ++KV ++ S+GGG HCWT DVRRRG LQ+YFD
Sbjct: 383 FEKLGISTIKVNIRNANSLGGGFHCWTCDVRRRGTLQSYFD 423
>sp|Q9D964|GATM_MOUSE Glycine amidinotransferase, mitochondrial precursor
(L-arginine:glycine amidinotransferase) (Transamidinase)
(AT)
Length = 423
Score = 207 bits (527), Expect = 2e-53
Identities = 98/161 (60%), Positives = 123/161 (76%)
Frame = +3
Query: 15 DIFAHVSQVSNNSGIEWVRRHLAPKGIRVHALNFVDPKPMHIDTTLFTPRPGVAITCPDR 194
DIFA SQV+N GIEW+RRHLAP RVH ++F DP PMHID T PG+ ++ PDR
Sbjct: 264 DIFAQRSQVTNYLGIEWMRRHLAPD-YRVHIISFKDPNPMHIDATFNIIGPGLVLSNPDR 322
Query: 195 PCLQIGLFKKAGWDVVVAPYPDIPKNFPYYISSQWLSLNVVMLDEKRVLVEKDEVGIQKL 374
PC QI LFKKAGW +V P P IP + P ++SS+WLS+NV+MLDEKRV+V+ +EV IQK+
Sbjct: 323 PCHQIDLFKKAGWTIVTPPTPVIPDDHPLWMSSKWLSMNVLMLDEKRVMVDANEVPIQKM 382
Query: 375 FEKVGIKSVKVPFKHCFSIGGGIHCWTSDVRRRGDLQNYFD 497
FEK+GI ++KV ++ S+GGG HCWT DVRRRG LQ+YFD
Sbjct: 383 FEKLGISTIKVNIRNANSLGGGFHCWTCDVRRRGTLQSYFD 423
>sp|P50441|GATM_PIG Glycine amidinotransferase (L-arginine:glycine amidinotransferase)
(Transamidinase) (AT)
Length = 386
Score = 207 bits (526), Expect = 2e-53
Identities = 96/161 (59%), Positives = 123/161 (76%)
Frame = +3
Query: 15 DIFAHVSQVSNNSGIEWVRRHLAPKGIRVHALNFVDPKPMHIDTTLFTPRPGVAITCPDR 194
DIFA SQV+N GIEW+R+HLAP RVH ++F DP PMHID T PG+ ++ PDR
Sbjct: 227 DIFAQRSQVTNYMGIEWMRKHLAPD-YRVHIISFKDPNPMHIDATFNIIGPGLVLSNPDR 285
Query: 195 PCLQIGLFKKAGWDVVVAPYPDIPKNFPYYISSQWLSLNVVMLDEKRVLVEKDEVGIQKL 374
PC QI LFKKAGW +V P P IP + P ++SS+WLS+NV+MLDEKRV+V+ +EV IQK+
Sbjct: 286 PCHQIDLFKKAGWTIVTPPIPVIPDDHPLWMSSKWLSMNVLMLDEKRVMVDANEVPIQKM 345
Query: 375 FEKVGIKSVKVPFKHCFSIGGGIHCWTSDVRRRGDLQNYFD 497
FEK+GI ++K+ ++ S+GGG HCWT DVRRRG LQ+YFD
Sbjct: 346 FEKLGISTIKISIRNANSLGGGFHCWTCDVRRRGTLQSYFD 386
>sp|P50440|GATM_HUMAN Glycine amidinotransferase, mitochondrial precursor
(L-arginine:glycine amidinotransferase) (Transamidinase)
(AT)
Length = 423
Score = 205 bits (521), Expect = 9e-53
Identities = 96/161 (59%), Positives = 122/161 (75%)
Frame = +3
Query: 15 DIFAHVSQVSNNSGIEWVRRHLAPKGIRVHALNFVDPKPMHIDTTLFTPRPGVAITCPDR 194
DIFA SQV+N GIEW+RRHLAP RVH ++F DP PMHID T PG+ ++ PDR
Sbjct: 264 DIFAQRSQVTNYLGIEWMRRHLAPD-YRVHIISFKDPNPMHIDATFNIIGPGIVLSNPDR 322
Query: 195 PCLQIGLFKKAGWDVVVAPYPDIPKNFPYYISSQWLSLNVVMLDEKRVLVEKDEVGIQKL 374
PC QI LFKKAGW ++ P P IP + P ++SS+WLS+NV+MLDEKRV+V+ +EV IQK+
Sbjct: 323 PCHQIDLFKKAGWTIITPPTPIIPDDHPLWMSSKWLSMNVLMLDEKRVMVDANEVPIQKM 382
Query: 375 FEKVGIKSVKVPFKHCFSIGGGIHCWTSDVRRRGDLQNYFD 497
FEK+GI ++KV ++ S+GGG HCWT DVRRRG LQ+Y D
Sbjct: 383 FEKLGITTIKVNIRNANSLGGGFHCWTCDVRRRGTLQSYLD 423
>sp|Q54258|STRB1_STRGA Inosamine-phosphate amidinotransferase I (Aminocyclitol
amidinotransferase) (ADT)
Length = 348
Score = 69.3 bits (168), Expect = 7e-12
Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 1/160 (0%)
Frame = +3
Query: 15 DIFAHVSQVSNNSGIEWVRRHLAPKGIRVHALNFVDPKPMHIDTTLFTPRPGVAITCPDR 194
D+ VS N G +W++ L +VH + H+D+T+ RPG+ + P R
Sbjct: 189 DLLYLVSDSGNELGAKWLQSALGST-YKVHPCRGLYAST-HVDSTIVPLRPGLVLVNPAR 246
Query: 195 PCLQIGLFKKAGWDVVVAP-YPDIPKNFPYYISSQWLSLNVVMLDEKRVLVEKDEVGIQK 371
W VV P DI S W+ +N++++ +V++ + G+ K
Sbjct: 247 VNDDNMPDFLRSWQTVVCPELVDIGFTGDKPHCSVWIGMNLLVVRPDLAVVDRRQTGLIK 306
Query: 372 LFEKVGIKSVKVPFKHCFSIGGGIHCWTSDVRRRGDLQNY 491
+ EK G+ + + H ++GGG HC T DVRR G L+ Y
Sbjct: 307 VLEKHGVDVLPLQLTHSRTLGGGFHCATLDVRRTGSLETY 346
>sp|P08078|STRB1_STRGR Inosamine-phosphate amidinotransferase I (Aminocyclitol
amidinotransferase) (ADT)
Length = 347
Score = 58.5 bits (140), Expect = 1e-08
Identities = 40/153 (26%), Positives = 71/153 (46%), Gaps = 1/153 (0%)
Frame = +3
Query: 15 DIFAHVSQVSNNSGIEWVRRHLAPKGIRVHALNFVDPKPMHIDTTLFTPRPGVAITCPDR 194
D+ VS N G +W++ + VH + H+D+T+ RPG+ +T P R
Sbjct: 189 DLLYLVSDSGNELGAKWLQSAVGDT-YTVHPCRKLYAST-HVDSTIVPLRPGLVLTNPSR 246
Query: 195 PCLQIGLFKKAGWDVVVAP-YPDIPKNFPYYISSQWLSLNVVMLDEKRVLVEKDEVGIQK 371
+ W+ + P DI S W+ +N++++ +V++ + + +
Sbjct: 247 VNDENMPDFLRSWENITCPELVDIGFTGDKPHCSVWIGMNLLVVRPDLAVVDRRQTALIR 306
Query: 372 LFEKVGIKSVKVPFKHCFSIGGGIHCWTSDVRR 470
L EK G+ + + H ++GGG HC T DVRR
Sbjct: 307 LLEKHGMNVLPLQLTHSRTLGGGFHCATLDVRR 339
>sp|Q54264|STRB2_STRGA Putative inosamine-phosphate amidinotransferase II (Aminocyclitol
amidinotransferase) (ADT)
Length = 319
Score = 52.0 bits (123), Expect = 1e-06
Identities = 44/163 (26%), Positives = 73/163 (44%), Gaps = 4/163 (2%)
Frame = +3
Query: 15 DIFAHVSQVSNNSGIEWVRRHLAPKGIRVHALNFVDPKPMHIDTTLFTPRPGVAITCPDR 194
D+ VS N G W++ L + VH P H D + PG+ + P+R
Sbjct: 160 DLLYLVSDSGNALGARWLQAALGER-YTVHPCRGPHGSP-HGDFAVVPLGPGLILVNPER 217
Query: 195 PCLQ-IGLFKKAGWDVVVAPY---PDIPKNFPYYISSQWLSLNVVMLDEKRVLVEKDEVG 362
+ I F + W +V P P P + SS W N++++ V+V++ +
Sbjct: 218 VDAEHIPPFLRT-WKRIVCPELVDPGPPDGAVH--SSGWGGSNILVVRPGLVIVDRRQAD 274
Query: 363 IQKLFEKVGIKSVKVPFKHCFSIGGGIHCWTSDVRRRGDLQNY 491
+ ++ E GI + + H ++G G H T DVRR G L++Y
Sbjct: 275 LMRVLENNGIDVLPLQLTHARALGSGFHRVTVDVRRTGTLESY 317
>sp|P29780|STRB2_STRGR Putative inosamine-phosphate amidinotransferase II (Aminocyclitol
amidinotransferase) (ADT)
Length = 349
Score = 51.2 bits (121), Expect = 2e-06
Identities = 41/166 (24%), Positives = 69/166 (41%), Gaps = 7/166 (4%)
Frame = +3
Query: 15 DIFAHVSQVSNNSGIEWVRRHLAPKGIRVHALNFVDPKPMHIDTTLFTPRPGVAITCPDR 194
D+ VS N G W++ L VH + HID+TL RPG+ + P R
Sbjct: 190 DLLYLVSDSGNELGARWLQSALGA-AYTVHPCRGLYSST-HIDSTLVPLRPGLVLVNPAR 247
Query: 195 PCLQIGLFKKAGWDVVVAPY-------PDIPKNFPYYISSQWLSLNVVMLDEKRVLVEKD 353
W + P D+P S W+ ++++++ V+V+
Sbjct: 248 VTDDNLPGVLRTWQRIECPALAGLGYAGDVPH------CSTWIGMSLLVVRPGLVVVDSR 301
Query: 354 EVGIQKLFEKVGIKSVKVPFKHCFSIGGGIHCWTSDVRRRGDLQNY 491
+ ++ E+ G+ + + H +GGG H T D+RR G L+ Y
Sbjct: 302 HRELMRVLERHGVDVLPLKLTHARMLGGGFHGVTLDIRRTGALETY 347
>sp|Q9Y8N2|Y2601_AERPE Hypothetical protein APE2601
Length = 274
Score = 34.3 bits (77), Expect = 0.26
Identities = 34/149 (22%), Positives = 63/149 (42%)
Frame = +3
Query: 3 SARGDIFAHVSQVSNNSGIEWVRRHLAPKGIRVHALNFVDPKPMHIDTTLFTPRPGVAIT 182
+ G +FA +S +N G+E ++ A + V LN K +H+ + L G A
Sbjct: 136 TGEGVVFAGLSSRTNREGVETLKT--AFPNVNVETLN---AKGLHLLSHL--GYLGKATL 188
Query: 183 CPDRPCLQIGLFKKAGWDVVVAPYPDIPKNFPYYISSQWLSLNVVMLDEKRVLVEKDEVG 362
+FK+ G+D++ P+ + + N++ L E RVL+
Sbjct: 189 ISAEGLYDKSIFKRHGFDLIEIPWEERD------------AANLLYLGEGRVLLPAGYNQ 236
Query: 363 IQKLFEKVGIKSVKVPFKHCFSIGGGIHC 449
+ L E+ G + V+ + + GG+ C
Sbjct: 237 TRDLLEQHGFRIVEAEIRQFMACMGGVTC 265
>sp|O53237|LEU2_MYCTU 3-isopropylmalate dehydratase large subunit (Isopropylmalate
isomerase) (Alpha-IPM isomerase) (IPMI)
Length = 473
Score = 32.7 bits (73), Expect = 0.77
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +3
Query: 15 DIFAHVSQVSNNSGIEWVRRHLAPKGIRVHALNFVDPKPMH-IDTTLFTPRPGVAITCPD 191
DI ++ + + +E +RR+ A GIR+H++ ++ +H + L +PG+ I C D
Sbjct: 76 DIDQPIADPVSRTQVETLRRNCAEFGIRLHSMGDIEQGIVHVVGPQLGLTQPGMTIVCGD 135
Query: 192 RPCLQIGLF 218
G F
Sbjct: 136 SHTSTHGAF 144
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,332,930
Number of Sequences: 369166
Number of extensions: 1514298
Number of successful extensions: 3929
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3922
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 4926080070
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)