Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_O10
(535 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P61243|YCF2_PHYPA Protein ycf2 32 1.3
sp|P57444|Y363_BUCAI Hypothetical UPF0020/UPF0064 protein B... 31 1.7
sp|Q9L7Q2|ZMPB_STRPN Zinc metalloprotease zmpB precursor 31 2.2
sp|Q93YT1|GLR32_ARATH Glutamate receptor 3.2 precursor (Lig... 30 3.7
sp|O43670|ZN207_HUMAN Zinc finger protein 207 30 3.7
sp|Q9RGZ2|MRPD_BACPF Na(+)/H(+) antiporter subunit D (Multi... 30 3.7
sp|O34023|Y454_CHLCV Hypothetical protein CCA00454 (ORFF) 30 3.7
sp|P48357|LEPR_HUMAN Leptin receptor precursor (LEP-R) (OB ... 30 4.8
sp|P38255|YBU5_YEAST Hypothetical 51.3 kDa protein in PHO5-... 30 4.8
sp|P24348|LET23_CAEEL Let-23 receptor tyrosine-protein kina... 30 4.8
>sp|P61243|YCF2_PHYPA Protein ycf2
Length = 2259
Score = 31.6 bits (70), Expect = 1.3
Identities = 35/128 (27%), Positives = 51/128 (39%), Gaps = 6/128 (4%)
Frame = +3
Query: 78 LEYRERYKLFISWMDPLNKVQNNYIYFEPLPNLNSGIKNPEFKSFNNINFENFRNTIHPI 257
L Y E K+F S N +F + N NS I+ +K+F E F N
Sbjct: 1027 LSYLELIKIF-SIKKKKTLSTNELTFFSKILNENSNIELKIYKTFLFEKLEQFNN----- 1080
Query: 258 LQNELSTHSGVINETSAIPTGTLAILIPILSA-KYPPKNAQLGTKCTNSS-----DCKEN 419
+N L H+ +N+ + + PI S KY KN L ++ D EN
Sbjct: 1081 -ENLLFIHNFNLNKLA----NSFVSFNPIFSTKKYLEKNISLQKSLKKNNDFYPIDSSEN 1135
Query: 420 YLYPFYFV 443
YL +F+
Sbjct: 1136 YLLSEFFI 1143
>sp|P57444|Y363_BUCAI Hypothetical UPF0020/UPF0064 protein BU363
Length = 701
Score = 31.2 bits (69), Expect = 1.7
Identities = 20/76 (26%), Positives = 34/76 (44%)
Frame = +3
Query: 24 YSDNSNGSVFAVLDMVIPLEYRERYKLFISWMDPLNKVQNNYIYFEPLPNLNSGIKNPEF 203
Y N S+F+ ++ + ++ + PLN +Q N++ F NS I EF
Sbjct: 338 YFKNWKLSIFSASTFLLDFLQMQSHEKYFFKNGPLNCIQKNFLIFFK----NSSITTNEF 393
Query: 204 KSFNNINFENFRNTIH 251
K N NF+ + I+
Sbjct: 394 KDRLNKNFKKLKKWIN 409
>sp|Q9L7Q2|ZMPB_STRPN Zinc metalloprotease zmpB precursor
Length = 1906
Score = 30.8 bits (68), Expect = 2.2
Identities = 18/60 (30%), Positives = 33/60 (55%)
Frame = +3
Query: 144 NYIYFEPLPNLNSGIKNPEFKSFNNINFENFRNTIHPILQNELSTHSGVINETSAIPTGT 323
+++Y + IKN + ++F+N+ + RNTI P+L N H +I+ +AI G+
Sbjct: 1377 DHVYIAERASEVEEIKNSKHRAFDNLKRSHLRNTILPLL-NIDKAHLYLISNYNAIAFGS 1435
>sp|Q93YT1|GLR32_ARATH Glutamate receptor 3.2 precursor (Ligand-gated ion channel 3.2)
(AtGluR2)
Length = 912
Score = 30.0 bits (66), Expect = 3.7
Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 14/107 (13%)
Frame = +3
Query: 87 RERYKLFISWMDPLNKVQNNYI-YFE--------PLPN----LNSGIKNPEFKSF-NNIN 224
R +K F+S +D NKVQ I FE P+P+ G+KNP F F NN+
Sbjct: 475 RASFKEFVSRLDGSNKVQGYAIDVFEAAVKLISYPVPHEFVLFGDGLKNPNFNEFVNNVT 534
Query: 225 FENFRNTIHPILQNELSTHSGVINETSAIPTGTLAILIPILSAKYPP 365
F + I ++ + +++ T L ++ P+ P
Sbjct: 535 IGVFDAVVGDIA--IVTKRTRIVDFTQPYIESGLVVVAPVTKLNDTP 579
>sp|O43670|ZN207_HUMAN Zinc finger protein 207
Length = 478
Score = 30.0 bits (66), Expect = 3.7
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = +3
Query: 237 RNTIHPILQNELSTHSGVINETSAIPTGTLAILIPILSAKYPPKNAQLGTKCTNSSDCKE 416
R I P+ Q + + G++N A PT T+ P ++ P Q+GT T+SS
Sbjct: 215 RPGIPPMTQAQAVSAPGILNRPPA-PTATVPAPQPPVTKPLFPSAGQMGTPVTSSSTASS 273
Query: 417 N 419
N
Sbjct: 274 N 274
>sp|Q9RGZ2|MRPD_BACPF Na(+)/H(+) antiporter subunit D (Multiple resistance and pH
homeostasis protein D) (Mrp complex subunit D)
Length = 493
Score = 30.0 bits (66), Expect = 3.7
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 393 TNSSDCKENYLYPFYFVLFGGVTNNF 470
T SS+ ++ Y YPFYF L GV F
Sbjct: 99 TISSEREKYYFYPFYFFLLAGVNGAF 124
>sp|O34023|Y454_CHLCV Hypothetical protein CCA00454 (ORFF)
Length = 581
Score = 30.0 bits (66), Expect = 3.7
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +3
Query: 225 FENFRNTIHPILQNELSTHSGVINETSAIPTGTLAILIPILSAKYPPKNAQL 380
F N + P+L N T V S +P G + +I +LS+ PPK +QL
Sbjct: 49 FHNVQGASFPVLTNLFGTQKRVDQIFSKVPKGLIPQVIHLLSS--PPKLSQL 98
>sp|P48357|LEPR_HUMAN Leptin receptor precursor (LEP-R) (OB receptor) (OB-R) (HuB219)
(CD295 antigen)
Length = 1165
Score = 29.6 bits (65), Expect = 4.8
Identities = 15/54 (27%), Positives = 32/54 (59%)
Frame = +3
Query: 6 IEDLGYYSDNSNGSVFAVLDMVIPLEYRERYKLFISWMDPLNKVQNNYIYFEPL 167
++ LGY+S+ SN + V+D+ +P+ E +++ D + K +N + ++PL
Sbjct: 616 LDGLGYWSNWSNPAYTVVMDIKVPMRGPEFWRIING--DTMKKEKNVTLLWKPL 667
>sp|P38255|YBU5_YEAST Hypothetical 51.3 kDa protein in PHO5-VPS15 intergenic region
Length = 453
Score = 29.6 bits (65), Expect = 4.8
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +3
Query: 165 LPNLNSGIKNPEFKSFNNINFENFRNTIHPILQNELSTHSGVIN 296
LP+ N + PE + ++ + N +N I+ + N LST +G IN
Sbjct: 256 LPSYNHNLTLPEDRGASDEDDINNKNNINEVNSNSLSTEAGHIN 299
>sp|P24348|LET23_CAEEL Let-23 receptor tyrosine-protein kinase precursor (Lethal protein
23)
Length = 1367
Score = 29.6 bits (65), Expect = 4.8
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Frame = +3
Query: 288 VINETSAIPT--GTLAILIPILSAKYPPKNAQLGTKCTNSSDCKENYLYPFYFVLFGGVT 461
V+ E P G++ ++IPI + NAQL +C + DC L G T
Sbjct: 40 VVRECMRYPPSIGSILLIIPIFLTFFGNSNAQLWKRCVSPQDC-----------LCSGTT 88
Query: 462 NNFS 473
N S
Sbjct: 89 NGIS 92
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,690,497
Number of Sequences: 369166
Number of extensions: 1199395
Number of successful extensions: 3111
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3107
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3650218350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)