Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_O08
(345 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q6DF27|CHM1B_XENTR Charged multivesicular body protein 1... 124 7e-29
sp|Q7SZB5|CHM1B_XENLA Charged multivesicular body protein 1... 122 3e-28
sp|Q5ZKX1|CHM1B_CHICK Charged multivesicular body protein 1... 120 7e-28
sp|Q99LU0|CH1B1_MOUSE Charged multivesicular body protein 1... 118 4e-27
sp|Q7LBR1|CHM1B_HUMAN Charged multivesicular body protein 1... 118 4e-27
sp|Q9CQD4|CH1B2_MOUSE Charged multivesicular body protein 1... 118 4e-27
sp|Q5E994|CHM1B_BOVIN Charged multivesicular body protein 1... 116 2e-26
sp|Q7ZVB1|CHM1B_BRARE Charged multivesicular body protein 1... 114 9e-26
sp|Q6PHF0|CHM1A_BRARE Charged multivesicular body protein 1... 89 2e-18
sp|Q5R605|CHM1A_PONPY Charged multivesicular body protein 1... 85 5e-17
>sp|Q6DF27|CHM1B_XENTR Charged multivesicular body protein 1b (Chromatin modifying protein
1b) (CHMP1b)
Length = 199
Score = 124 bits (311), Expect = 7e-29
Identities = 62/91 (68%), Positives = 78/91 (85%)
Frame = +2
Query: 2 LEKVSQLMDRFEKDFENLDVQSQVMESTMCNTTTLTTPQNQVESLMHEVADEAGIELNMQ 181
LEK+S LMD+FE FE LDVQ+Q ME TM NTTTLTTPQNQV++L+HE+ADEAG++LNM+
Sbjct: 108 LEKISALMDKFEHQFETLDVQTQQMEDTMSNTTTLTTPQNQVDNLLHEMADEAGLDLNME 167
Query: 182 LPAGQSTAVGGASSQAAQEQDELTQRLAKLR 274
LP GQ+ +VG +S A+ EQDEL+QRLA+LR
Sbjct: 168 LPQGQTGSVG--TSVASTEQDELSQRLARLR 196
>sp|Q7SZB5|CHM1B_XENLA Charged multivesicular body protein 1b (Chromatin modifying protein
1b) (CHMP1b)
Length = 199
Score = 122 bits (306), Expect = 3e-28
Identities = 61/91 (67%), Positives = 78/91 (85%)
Frame = +2
Query: 2 LEKVSQLMDRFEKDFENLDVQSQVMESTMCNTTTLTTPQNQVESLMHEVADEAGIELNMQ 181
LEK+S LMD+FE FE LDVQ+Q ME TM NTTTLTTPQNQV++L+HE+ADEAG++L+M+
Sbjct: 108 LEKISALMDKFEHQFETLDVQTQQMEDTMSNTTTLTTPQNQVDNLLHEMADEAGLDLSME 167
Query: 182 LPAGQSTAVGGASSQAAQEQDELTQRLAKLR 274
LP GQ+ +VG +S A+ EQDEL+QRLA+LR
Sbjct: 168 LPQGQTGSVG--TSVASTEQDELSQRLARLR 196
>sp|Q5ZKX1|CHM1B_CHICK Charged multivesicular body protein 1b (Chromatin modifying protein
1b) (CHMP1b)
Length = 199
Score = 120 bits (302), Expect = 7e-28
Identities = 61/91 (67%), Positives = 77/91 (84%)
Frame = +2
Query: 2 LEKVSQLMDRFEKDFENLDVQSQVMESTMCNTTTLTTPQNQVESLMHEVADEAGIELNMQ 181
LEK+S LMD+FE FE LDVQ+Q ME+TM NTTTLTTPQNQV+ L+ E+ADEAG++LNM+
Sbjct: 108 LEKISALMDKFEHQFETLDVQTQQMENTMSNTTTLTTPQNQVDMLLQEMADEAGLDLNME 167
Query: 182 LPAGQSTAVGGASSQAAQEQDELTQRLAKLR 274
LP GQ+ +VG +S A+ EQDEL+QRLA+LR
Sbjct: 168 LPQGQTGSVG--TSVASAEQDELSQRLARLR 196
>sp|Q99LU0|CH1B1_MOUSE Charged multivesicular body protein 1b-1 (Chromatin modifying
protein 1b-1) (CHMP1b-1)
Length = 199
Score = 118 bits (296), Expect = 4e-27
Identities = 60/91 (65%), Positives = 76/91 (83%)
Frame = +2
Query: 2 LEKVSQLMDRFEKDFENLDVQSQVMESTMCNTTTLTTPQNQVESLMHEVADEAGIELNMQ 181
LEK+S LMD+FE FE LDVQ+Q ME TM +TTTLTTPQNQV+ L+ E+ADEAG++LNM+
Sbjct: 108 LEKISALMDKFEHQFETLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGLDLNME 167
Query: 182 LPAGQSTAVGGASSQAAQEQDELTQRLAKLR 274
LP GQ+ +VG +S A+ EQDEL+QRLA+LR
Sbjct: 168 LPQGQTGSVG--TSVASAEQDELSQRLARLR 196
>sp|Q7LBR1|CHM1B_HUMAN Charged multivesicular body protein 1b (Chromatin modifying protein
1b) (CHMP1b) (CHMP1.5) (Vacuolar protein sorting 46-2)
(Vps46-2) (hVps46-2)
Length = 199
Score = 118 bits (296), Expect = 4e-27
Identities = 60/91 (65%), Positives = 76/91 (83%)
Frame = +2
Query: 2 LEKVSQLMDRFEKDFENLDVQSQVMESTMCNTTTLTTPQNQVESLMHEVADEAGIELNMQ 181
LEK+S LMD+FE FE LDVQ+Q ME TM +TTTLTTPQNQV+ L+ E+ADEAG++LNM+
Sbjct: 108 LEKISALMDKFEHQFETLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGLDLNME 167
Query: 182 LPAGQSTAVGGASSQAAQEQDELTQRLAKLR 274
LP GQ+ +VG +S A+ EQDEL+QRLA+LR
Sbjct: 168 LPQGQTGSVG--TSVASAEQDELSQRLARLR 196
>sp|Q9CQD4|CH1B2_MOUSE Charged multivesicular body protein 1b-2 (Chromatin modifying
protein 1b-2) (CHMP1b-2)
Length = 199
Score = 118 bits (296), Expect = 4e-27
Identities = 60/91 (65%), Positives = 76/91 (83%)
Frame = +2
Query: 2 LEKVSQLMDRFEKDFENLDVQSQVMESTMCNTTTLTTPQNQVESLMHEVADEAGIELNMQ 181
LEK+S LMD+FE FE LDVQ+Q ME TM +TTTLTTPQNQV+ L+ E+ADEAG++LNM+
Sbjct: 108 LEKISALMDKFEHQFETLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGLDLNME 167
Query: 182 LPAGQSTAVGGASSQAAQEQDELTQRLAKLR 274
LP GQ+ +VG +S A+ EQDEL+QRLA+LR
Sbjct: 168 LPQGQTGSVG--ASVASTEQDELSQRLARLR 196
>sp|Q5E994|CHM1B_BOVIN Charged multivesicular body protein 1b (Chromatin modifying protein
1b) (CHMP1b)
Length = 199
Score = 116 bits (290), Expect = 2e-26
Identities = 59/91 (64%), Positives = 75/91 (82%)
Frame = +2
Query: 2 LEKVSQLMDRFEKDFENLDVQSQVMESTMCNTTTLTTPQNQVESLMHEVADEAGIELNMQ 181
LEK+S LMD+FE FE LDVQ+Q ME TM +TTTLTTPQ QV+ L+ E+ADEAG++LNM+
Sbjct: 108 LEKISALMDKFEHQFETLDVQTQQMEDTMSSTTTLTTPQGQVDMLLQEMADEAGLDLNME 167
Query: 182 LPAGQSTAVGGASSQAAQEQDELTQRLAKLR 274
LP GQ+ +VG +S A+ EQDEL+QRLA+LR
Sbjct: 168 LPQGQTGSVG--TSVASAEQDELSQRLARLR 196
>sp|Q7ZVB1|CHM1B_BRARE Charged multivesicular body protein 1b (Chromatin modifying protein
1b) (CHMP1b)
Length = 199
Score = 114 bits (284), Expect = 9e-26
Identities = 58/91 (63%), Positives = 76/91 (83%)
Frame = +2
Query: 2 LEKVSQLMDRFEKDFENLDVQSQVMESTMCNTTTLTTPQNQVESLMHEVADEAGIELNMQ 181
LEK+S LM++FE+ FE LDVQ+ ME +M +TTTLTTPQ QV++LM E+ADEAG++LNM+
Sbjct: 108 LEKISGLMEKFERQFETLDVQTAQMEDSMSSTTTLTTPQGQVDTLMMEMADEAGLDLNME 167
Query: 182 LPAGQSTAVGGASSQAAQEQDELTQRLAKLR 274
LP GQ+ +VG +S A+ EQDEL+QRLAKLR
Sbjct: 168 LPQGQTGSVG--TSVASAEQDELSQRLAKLR 196
>sp|Q6PHF0|CHM1A_BRARE Charged multivesicular body protein 1a (Chromatin modifying protein
1a) (CHMP1a)
Length = 198
Score = 89.4 bits (220), Expect = 2e-18
Identities = 46/94 (48%), Positives = 71/94 (75%), Gaps = 3/94 (3%)
Frame = +2
Query: 2 LEKVSQLMDRFEKDFENLDVQSQVMESTMCNTTTLTTPQNQVESLMHEVADEAGIELN-- 175
L+KVS +MD+FE +NLDV + VME +M + TTL+TPQ QV+ L+ ++A+E+G+E+
Sbjct: 105 LQKVSAVMDKFETQVQNLDVHTSVMEDSMSSATTLSTPQQQVDDLILQIAEESGLEVEDQ 164
Query: 176 -MQLPAGQSTAVGGASSQAAQEQDELTQRLAKLR 274
QLPAG S A+G S++A +++D+L++RLA LR
Sbjct: 165 LSQLPAGAS-ALGETSARAQEKEDQLSRRLAALR 197
>sp|Q5R605|CHM1A_PONPY Charged multivesicular body protein 1a (Chromatin modifying protein
1a) (CHMP1a)
sp|Q9HD42|CHM1A_HUMAN Charged multivesicular body protein 1a (Chromatin modifying protein
1a) (CHMP1a) (Vacuolar protein sorting 46-1) (Vps46-1)
(hVps46-1)
Length = 196
Score = 85.1 bits (209), Expect = 5e-17
Identities = 48/94 (51%), Positives = 67/94 (71%), Gaps = 3/94 (3%)
Frame = +2
Query: 2 LEKVSQLMDRFEKDFENLDVQSQVMESTMCNTTTLTTPQNQVESLMHEVADEAGIEL--- 172
L+KVS +MDRFE+ +NLDV + VME +M + TTLTTPQ QV+SL+ ++A+E G+E+
Sbjct: 105 LQKVSSVMDRFEQQVQNLDVHTSVMEDSMSSATTLTTPQEQVDSLIMQIAEENGLEVLDQ 164
Query: 173 NMQLPAGQSTAVGGASSQAAQEQDELTQRLAKLR 274
QLP G S AVG S ++D+L++RLA LR
Sbjct: 165 LSQLPEGAS-AVG--ESSVRSQEDQLSRRLAALR 195
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,235,989
Number of Sequences: 369166
Number of extensions: 493014
Number of successful extensions: 1758
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1749
length of database: 68,354,980
effective HSP length: 82
effective length of database: 53,206,710
effective search space used: 1702614720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)