Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_O06
(453 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P91924|ARF_DUGJA ADP-ribosylation factor 271 4e-73
sp|Q4R5P2|ARF1_MACFA ADP-ribosylation factor 1 >gi|51316981... 254 6e-68
sp|P51643|ARF1_XENLA ADP-ribosylation factor 1 254 6e-68
sp|P61206|ARF3_RAT ADP-ribosylation factor 3 (Liver regener... 253 1e-67
sp|P61210|ARF1_LOCMI ADP-ribosylation factor 1 (lARF1) >gi|... 251 7e-67
sp|P51824|ARF1_SOLTU ADP-ribosylation factor 1 250 9e-67
sp|P84082|ARF2_RAT ADP-ribosylation factor 2 >gi|51316991|s... 249 2e-66
sp|P51821|ARF1_CHLRE ADP-ribosylation factor 1 249 3e-66
sp|O48649|ARF1_SALBA ADP-ribosylation factor 1 248 4e-66
sp|P34728|ARF_CRYNE ADP-ribosylation factor 248 6e-66
>sp|P91924|ARF_DUGJA ADP-ribosylation factor
Length = 183
Score = 271 bits (694), Expect = 4e-73
Identities = 135/135 (100%), Positives = 135/135 (100%)
Frame = +3
Query: 48 MGNLVTHLLDRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 227
MGNLVTHLLDRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGNLVTHLLDRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 228 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAV 407
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAV 120
Query: 408 LLVFANKQDLPNAMN 452
LLVFANKQDLPNAMN
Sbjct: 121 LLVFANKQDLPNAMN 135
>sp|Q4R5P2|ARF1_MACFA ADP-ribosylation factor 1
sp|P84079|ARF1_RAT ADP-ribosylation factor 1
sp|P84078|ARF1_MOUSE ADP-ribosylation factor 1
sp|P84077|ARF1_HUMAN ADP-ribosylation factor 1
sp|P84080|ARF1_BOVIN ADP-ribosylation factor 1
Length = 181
Score = 254 bits (649), Expect = 6e-68
Identities = 127/135 (94%), Positives = 129/135 (95%)
Frame = +3
Query: 48 MGNLVTHLLDRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 227
MGN+ +L LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 228 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAV 407
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRML EDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 120
Query: 408 LLVFANKQDLPNAMN 452
LLVFANKQDLPNAMN
Sbjct: 121 LLVFANKQDLPNAMN 135
>sp|P51643|ARF1_XENLA ADP-ribosylation factor 1
Length = 181
Score = 254 bits (649), Expect = 6e-68
Identities = 127/135 (94%), Positives = 129/135 (95%)
Frame = +3
Query: 48 MGNLVTHLLDRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 227
MGN+ +L LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGNMFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 228 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAV 407
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRML EDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 120
Query: 408 LLVFANKQDLPNAMN 452
LLVFANKQDLPNAMN
Sbjct: 121 LLVFANKQDLPNAMN 135
>sp|P61206|ARF3_RAT ADP-ribosylation factor 3 (Liver regeneration-related protein
LRRG202)
sp|P61205|ARF3_MOUSE ADP-ribosylation factor 3
sp|P61207|ARF3_FUGRU ADP-ribosylation factor 3
sp|Q5R5P7|ARF3_PONPY ADP-ribosylation factor 3
sp|P61204|ARF3_HUMAN ADP-ribosylation factor 3
Length = 181
Score = 253 bits (646), Expect = 1e-67
Identities = 127/135 (94%), Positives = 129/135 (95%)
Frame = +3
Query: 48 MGNLVTHLLDRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 227
MGN+ +LL L GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 228 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAV 407
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRML EDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 120
Query: 408 LLVFANKQDLPNAMN 452
LLVFANKQDLPNAMN
Sbjct: 121 LLVFANKQDLPNAMN 135
>sp|P61210|ARF1_LOCMI ADP-ribosylation factor 1 (lARF1)
sp|P61209|ARF1_DROME ADP-ribosylation factor 1
Length = 182
Score = 251 bits (640), Expect = 7e-67
Identities = 124/135 (91%), Positives = 128/135 (94%)
Frame = +3
Query: 48 MGNLVTHLLDRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 227
MGN+ +L LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGNVFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 228 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAV 407
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER+ EAREELMRML EDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLAEDELRDAV 120
Query: 408 LLVFANKQDLPNAMN 452
LL+FANKQDLPNAMN
Sbjct: 121 LLIFANKQDLPNAMN 135
>sp|P51824|ARF1_SOLTU ADP-ribosylation factor 1
Length = 197
Score = 250 bits (639), Expect = 9e-67
Identities = 125/135 (92%), Positives = 128/135 (94%)
Frame = +3
Query: 48 MGNLVTHLLDRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 227
MG ++ L RLF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLTISKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 228 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAV 407
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RVNEAREELMRML EDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVNEAREELMRMLAEDELRDAV 120
Query: 408 LLVFANKQDLPNAMN 452
LLVFANKQDLPNAMN
Sbjct: 121 LLVFANKQDLPNAMN 135
>sp|P84082|ARF2_RAT ADP-ribosylation factor 2
sp|Q8BSL7|ARF2_MOUSE ADP-ribosylation factor 2
sp|P84081|ARF2_BOVIN ADP-ribosylation factor 2
Length = 181
Score = 249 bits (636), Expect = 2e-66
Identities = 125/135 (92%), Positives = 126/135 (93%)
Frame = +3
Query: 48 MGNLVTHLLDRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 227
MGN+ L LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGNVFEKLFKSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 228 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAV 407
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREEL RML EDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAV 120
Query: 408 LLVFANKQDLPNAMN 452
LLVF NKQDLPNAMN
Sbjct: 121 LLVFVNKQDLPNAMN 135
>sp|P51821|ARF1_CHLRE ADP-ribosylation factor 1
Length = 181
Score = 249 bits (635), Expect = 3e-66
Identities = 126/135 (93%), Positives = 127/135 (94%)
Frame = +3
Query: 48 MGNLVTHLLDRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 227
MG T L RLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLRFTKALSRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 228 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAV 407
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERV EAR+EL RMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAV 120
Query: 408 LLVFANKQDLPNAMN 452
LLVFANKQDLPNAMN
Sbjct: 121 LLVFANKQDLPNAMN 135
>sp|O48649|ARF1_SALBA ADP-ribosylation factor 1
Length = 181
Score = 248 bits (633), Expect = 4e-66
Identities = 125/135 (92%), Positives = 127/135 (94%)
Frame = +3
Query: 48 MGNLVTHLLDRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 227
MG T LL RLF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLSFTKLLGRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 228 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAV 407
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVGEARDELHRMLNEDELRDAV 120
Query: 408 LLVFANKQDLPNAMN 452
LLVFANKQDLPNAMN
Sbjct: 121 LLVFANKQDLPNAMN 135
>sp|P34728|ARF_CRYNE ADP-ribosylation factor
Length = 182
Score = 248 bits (632), Expect = 6e-66
Identities = 123/135 (91%), Positives = 129/135 (95%)
Frame = +3
Query: 48 MGNLVTHLLDRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 227
MG V+ LL+ LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLSVSKLLNGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 228 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAV 407
ISFTVWDVGGQDKIRPLWRHYFQNTQG+IFVVDSNDRER+ EAREEL RML+EDELRDA+
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERITEAREELQRMLSEDELRDAL 120
Query: 408 LLVFANKQDLPNAMN 452
LLVFANKQDLPNAMN
Sbjct: 121 LLVFANKQDLPNAMN 135
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,048,622
Number of Sequences: 369166
Number of extensions: 791694
Number of successful extensions: 3292
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3233
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2435140505
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)