Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_N15
(804 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P75059|POTA_MYCPN Spermidine/putrescine import ATP-bindi... 32 2.0
sp|Q28983|ZAN_PIG Zonadhesin precursor 32 2.0
sp|Q96DZ7|T4S19_HUMAN Transmembrane 4 L6 family 19 30 5.9
sp|P47288|POTA_MYCGE Spermidine/putrescine import ATP-bindi... 30 5.9
sp|Q19673|TYR3_CAEEL Putative tyrosinase-like protein tyr-3... 30 7.7
>sp|P75059|POTA_MYCPN Spermidine/putrescine import ATP-binding protein potA
Length = 560
Score = 32.0 bits (71), Expect = 2.0
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +1
Query: 76 NEQFLIIFIPLR*TVKDGIIILRSYCI-INQNDSTTVNLPSYIGKSQIMCLLSTFTSPT 249
NE+FLI L T DG + +R + I + + T+ PS GK+ + LL+ F PT
Sbjct: 2 NERFLIEIEGLNKTFDDGFVSVRDINLKIKKGEFITILGPSGCGKTTTLRLLAGFEDPT 60
>sp|Q28983|ZAN_PIG Zonadhesin precursor
Length = 2476
Score = 32.0 bits (71), Expect = 2.0
Identities = 29/110 (26%), Positives = 43/110 (39%), Gaps = 10/110 (9%)
Frame = -1
Query: 723 PRRNTPQARLRTELPVGR*TAPKQTCLPQIIAVVTATLHSKNPTIKSNVCRTMRCILLDD 544
P + T +RT P R T P + I T T + PT K+ V T + I+ +
Sbjct: 591 PTKRTTTPTIRTTTPTIRTTTPTERTTTPTIRTTTPTERTTIPTKKTTV-PTEKTIIPTE 649
Query: 543 ACLTPSWTRPA-----VETEARIALVTDVITHNTRREI-----NVHGERC 424
+ P+ +P+ + A + T T R I N H ERC
Sbjct: 650 RTIAPTTPQPSPTLVPTQPAAVVMPSTSATTVTPRTTIASCPPNAHFERC 699
>sp|Q96DZ7|T4S19_HUMAN Transmembrane 4 L6 family 19
Length = 209
Score = 30.4 bits (67), Expect = 5.9
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +2
Query: 356 IGTGMWAGSLMLAAGCLGIATSRHRSPCTLISLLVLCVMTSVTSAILA 499
+GTG+W G LM+ + I+ R C S L V+T++ S LA
Sbjct: 57 LGTGLWGGGLMVLTAAILISLMGWRYGCFSKSGLCRSVLTALLSGGLA 104
>sp|P47288|POTA_MYCGE Spermidine/putrescine import ATP-binding protein potA
Length = 559
Score = 30.4 bits (67), Expect = 5.9
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +1
Query: 76 NEQFLIIFIPLR*TVKDGIIILRSYCI-INQNDSTTVNLPSYIGKSQIMCLLSTFTSPT 249
NE LI L T DG + +R + I + + T+ PS GK+ ++ LL+ F PT
Sbjct: 2 NEHSLIEIEGLNKTFDDGYVSIRDISLNIKKGEFITILGPSGCGKTTLLRLLAGFEDPT 60
>sp|Q19673|TYR3_CAEEL Putative tyrosinase-like protein tyr-3 precursor
Length = 683
Score = 30.0 bits (66), Expect = 7.7
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Frame = +1
Query: 487 CDSCFCFN-GWSCPRWCQTGIVKQNASHCSAHIAFYCWILR 606
CDS C+N CP W Q G + N + + C + R
Sbjct: 576 CDSPMCYNEDQCCPIWAQRGQCRSNPGYMTCQCKVSCGVCR 616
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,210,931
Number of Sequences: 369166
Number of extensions: 1733983
Number of successful extensions: 4124
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4121
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7618580670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)