Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_N12
(490 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O14207|YDT2_SCHPO Hypothetical protein C6B12.02c in chro... 32 1.0
sp|Q9ZCB3|HEMK_RICPR Bifunctional methyltransferase [Includ... 28 8.8
sp|Q7M3S9|RNGB_DICDI Ring finger protein B (Protein rngB) 28 8.8
>sp|O14207|YDT2_SCHPO Hypothetical protein C6B12.02c in chromosome I
Length = 1888
Score = 31.6 bits (70), Expect = 1.0
Identities = 19/63 (30%), Positives = 31/63 (49%)
Frame = -2
Query: 354 FSLEQFIFLTTNKLKSNNELIVNILPYFFKKKLISLSFLEDSKYIW*LESELK*GKVE*T 175
F+++ +F T KLK E ++ LPYF + + L L + L S++ G V
Sbjct: 717 FNIQDDVFKTFEKLKDTFETVLENLPYFTNSETVDLYNLLSFCSAFILHSQVSMGLVNLA 776
Query: 174 NSF 166
+SF
Sbjct: 777 SSF 779
>sp|Q9ZCB3|HEMK_RICPR Bifunctional methyltransferase [Includes: HemK protein homolog
(M.RprHemKP); tRNA (guanine-N(7)-)-methyltransferase
(tRNA(m7G46)-methyltransferase)]
Length = 518
Score = 28.5 bits (62), Expect = 8.8
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +2
Query: 134 SNY*KKFDKY*NEFVYSTFPYFNSDSNYQMYLESSKNESEINFFLKK*G 280
SN+ +K DK +F+ S PY + +M +E+ E I F ++ G
Sbjct: 190 SNWFEKLDKQKFDFIVSNPPYISHTEKLKMAIETINYEPSIALFAEEDG 238
>sp|Q7M3S9|RNGB_DICDI Ring finger protein B (Protein rngB)
Length = 943
Score = 28.5 bits (62), Expect = 8.8
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = -2
Query: 447 KTNNTKQFQQIESKNKIDSNQNPFNR*NKDAFSLEQFIFLTTNKLKSNNELIVN 286
K +Q QQ+++ N++ + N +KD+F E I +N+LK + I +
Sbjct: 774 KLQQEQQQQQLKNINRLSISSNSSTLSSKDSFYFESKIQELSNQLKEKQQAITD 827
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,745,542
Number of Sequences: 369166
Number of extensions: 590587
Number of successful extensions: 1468
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1467
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 2970720600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)