Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_N05
(806 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9WUM4|COR1C_MOUSE Coronin-1C (Coronin-3) 42 0.002
sp|Q9ULV4|COR1C_HUMAN Coronin-1C (Coronin-3) (hCRNN4) 42 0.002
sp|Q9UQ03|COR2B_HUMAN Coronin-2B (Coronin-like protein C) (... 38 0.037
sp|Q8BH44|COR2B_MOUSE Coronin-2B 37 0.049
sp|P31146|COR1A_HUMAN Coronin-1A (Coronin-like protein p57)... 35 0.32
sp|Q92176|COR1A_BOVIN Coronin-1A (Coronin-like protein p57)... 35 0.32
sp|O89053|COR1A_MOUSE Coronin-1A (Coronin-like protein p57)... 35 0.32
sp|Q920M5|CORO6_MOUSE Coronin-6 (Clipin E) 34 0.41
sp|Q9D2V7|CORO7_MOUSE Coronin-7 (70 kDa WD repeat tumor rej... 34 0.54
sp|Q920J3|CORO6_RAT Coronin-6 34 0.54
>sp|Q9WUM4|COR1C_MOUSE Coronin-1C (Coronin-3)
Length = 474
Score = 42.0 bits (97), Expect = 0.002
Identities = 24/50 (48%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +3
Query: 3 ALSAEEWFEGTNNNPILVSMKDGF-KTKERTRKPVKAAIKSKITDQKAPA 149
AL AEEWFEG N +PIL+S+K G+ K R K +K I D K A
Sbjct: 371 ALEAEEWFEGKNADPILISLKHGYIPGKNRDLK----VVKKNILDSKPAA 416
>sp|Q9ULV4|COR1C_HUMAN Coronin-1C (Coronin-3) (hCRNN4)
Length = 474
Score = 42.0 bits (97), Expect = 0.002
Identities = 26/48 (54%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Frame = +3
Query: 3 ALSAEEWFEGTNNNPILVSMKDGF-KTKERTRKPVKAAI-KSKITDQK 140
AL AEEWFEG N +PIL+S+K G+ K R K VK I SK T K
Sbjct: 371 ALEAEEWFEGKNADPILISLKHGYIPGKNRDLKVVKKNILDSKPTANK 418
>sp|Q9UQ03|COR2B_HUMAN Coronin-2B (Coronin-like protein C) (ClipinC) (Protein FC96)
Length = 475
Score = 37.7 bits (86), Expect = 0.037
Identities = 17/41 (41%), Positives = 28/41 (68%)
Frame = +3
Query: 3 ALSAEEWFEGTNNNPILVSMKDGFKTKERTRKPVKAAIKSK 125
AL+ +EW G N +P+L+S+K+G+ K+ ++ KA IK K
Sbjct: 373 ALTPDEWLGGINRDPVLMSLKEGY--KKSSKMVFKAPIKEK 411
>sp|Q8BH44|COR2B_MOUSE Coronin-2B
Length = 475
Score = 37.4 bits (85), Expect = 0.049
Identities = 17/47 (36%), Positives = 29/47 (61%)
Frame = +3
Query: 3 ALSAEEWFEGTNNNPILVSMKDGFKTKERTRKPVKAAIKSKITDQKA 143
AL+ +EW G N +P+L+S+K+G+K K K K+ I ++K+
Sbjct: 373 ALTPDEWLGGINRDPVLMSLKEGYK------KSSKVVFKAPIREKKS 413
>sp|P31146|COR1A_HUMAN Coronin-1A (Coronin-like protein p57) (Coronin-like protein A)
(CLIPINA) (Tryptophan aspartate-containing coat protein)
(TACO)
Length = 461
Score = 34.7 bits (78), Expect = 0.32
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = +3
Query: 3 ALSAEEWFEGTNNNPILVSMKDGF 74
AL+AEEW G + P+L+S+KDG+
Sbjct: 373 ALTAEEWLGGRDAGPLLISLKDGY 396
>sp|Q92176|COR1A_BOVIN Coronin-1A (Coronin-like protein p57) (Coronin-like protein A)
(CLIPINA) (Tryptophan aspartate-containing coat protein)
(TACO)
Length = 461
Score = 34.7 bits (78), Expect = 0.32
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = +3
Query: 3 ALSAEEWFEGTNNNPILVSMKDGF 74
AL+AEEW G + P+L+S+KDG+
Sbjct: 373 ALTAEEWLGGRDAGPLLISLKDGY 396
>sp|O89053|COR1A_MOUSE Coronin-1A (Coronin-like protein p57) (Coronin-like protein A)
(CLIPINA) (Tryptophan aspartate-containing coat protein)
(TACO)
Length = 461
Score = 34.7 bits (78), Expect = 0.32
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = +3
Query: 3 ALSAEEWFEGTNNNPILVSMKDGF 74
AL+AEEW G + P+L+S+KDG+
Sbjct: 373 ALTAEEWLGGRDAGPLLISLKDGY 396
>sp|Q920M5|CORO6_MOUSE Coronin-6 (Clipin E)
Length = 471
Score = 34.3 bits (77), Expect = 0.41
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +3
Query: 3 ALSAEEWFEGTNNNPILVSMKDGFKTKERTRKPVKAAIKSKITDQKAPA 149
AL A+EW G + P+L+S+K+G+ + V K I D + PA
Sbjct: 372 ALEADEWLSGQDAEPVLISLKEGYVPPKHRELRV---TKRNILDVRPPA 417
>sp|Q9D2V7|CORO7_MOUSE Coronin-7 (70 kDa WD repeat tumor rejection antigen homolog)
Length = 922
Score = 33.9 bits (76), Expect = 0.54
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
Frame = +3
Query: 3 ALSAEEWFEGTNNNPILVSMKDGFKTKERTRKPVKAAIKSKITDQKAPAKVEI------- 161
ALSA+ WFEG N P L+S++ T PV A + ++ ++AP+ +
Sbjct: 835 ALSAKAWFEGANGQPRLLSLQPPGMT------PVSQAPR-EVPARRAPSSAQYLEEKSDQ 887
Query: 162 -KSXXXXXXXXXXXXXRSKPLPKTAFKRASEENSD 263
K R PLP+ +F+ E+ D
Sbjct: 888 QKKEELLNAMVAKLGNREDPLPQDSFEGVDEDEWD 922
>sp|Q920J3|CORO6_RAT Coronin-6
Length = 472
Score = 33.9 bits (76), Expect = 0.54
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +3
Query: 3 ALSAEEWFEGTNNNPILVSMKDGFKTKERTRKPVKAAIKSKITDQKAPA 149
AL A+EW G + P+L+S+K+G+ + V K I D + PA
Sbjct: 372 ALEADEWLSGQDAEPVLISLKEGYVPPKHREFRV---TKRNILDVRPPA 417
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,671,885
Number of Sequences: 369166
Number of extensions: 832975
Number of successful extensions: 2328
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2325
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7666799535
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)