Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_M23
(750 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8R317|UBQL1_MOUSE Ubiquilin-1 (Protein linking IAP with... 225 9e-59
sp|Q9UMX0|UBQL1_HUMAN Ubiquilin-1 (Protein linking IAP with... 221 1e-57
sp|Q9JJP9|UBQL1_RAT Ubiquilin-1 (Protein linking IAP with c... 218 2e-56
sp|Q99NB8|UBQL4_MOUSE Ubiquilin-4 (Ataxin-1 ubiquitin-like ... 217 3e-56
sp|Q9UHD9|UBQL2_HUMAN Ubiquilin-2 (Protein linking IAP with... 216 5e-56
sp|Q9NRR5|UBQL4_HUMAN Ubiquilin-4 (Ataxin-1 ubiquitin-like ... 216 7e-56
sp|Q9QZM0|UBQL2_MOUSE Ubiquilin-2 (Protein linking IAP with... 205 1e-52
sp|Q8C5U9|UBQL3_MOUSE Ubiquilin-3 189 9e-48
sp|Q9H347|UBQL3_HUMAN Ubiquilin-3 175 1e-43
sp|P48510|DSK2_YEAST Ubiquitin-like protein DSK2 71 4e-12
>sp|Q8R317|UBQL1_MOUSE Ubiquilin-1 (Protein linking IAP with cytoskeleton-1) (PLIC-1)
Length = 582
Score = 225 bits (574), Expect = 9e-59
Identities = 121/250 (48%), Positives = 167/250 (66%), Gaps = 13/250 (5%)
Frame = +3
Query: 3 IFAGKILKDEDKLASSKIVDGVTVHLVVKQLQQQTRASDVPLNQTNFPGTV----PVPPS 170
IFAGKILKD+D L+ I DG+TVHLV+K Q R D QTN PG+ P P S
Sbjct: 70 IFAGKILKDQDTLSQHGIHDGLTVHLVIKT---QNRPQDNSAQQTNAPGSTVTSSPAPDS 126
Query: 171 QPTNTSS--NIFGQPMDFAGLLGNMNTG---GSFDDMQRQFQQQLMSNPDMMRSMLENPL 335
PT+ S+ + FG GL G + G +F ++Q Q Q+QL+SNP+MM ++ENP
Sbjct: 127 NPTSGSAANSSFGVG-GLGGLAGLSSLGLNTTNFSELQSQMQRQLLSNPEMMVQIMENPF 185
Query: 336 MQQLLQSPEVIQTMMQSNPQVRQLIERNPEVGHILNNPSLMRQTMEMMRNPAMMQELMRH 515
+Q +L +P++++ ++ +NPQ++QLI+RNPE+ H+LNNP +MRQT+E+ RNPAMMQE+MR+
Sbjct: 186 VQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHMLNNPDIMRQTLELARNPAMMQEMMRN 245
Query: 516 HDRALLNAEAFPGGMNHLTRLYRDVQEPLMDATT---GTNPFASLANRXXXXXXXRHG-T 683
DRAL N E+ PGG N L R+Y D+QEP+++A G NPFASL + + T
Sbjct: 246 QDRALSNLESIPGGYNALRRMYTDIQEPMLNAAQEQFGGNPFASLVSSSSSAEGTQPSRT 305
Query: 684 ENNEPLPNPW 713
EN +PLPNPW
Sbjct: 306 ENRDPLPNPW 315
Score = 45.4 bits (106), Expect = 2e-04
Identities = 47/171 (27%), Positives = 70/171 (40%), Gaps = 16/171 (9%)
Frame = +3
Query: 90 QLQQQTRASDVPLNQTNFPGT-----VPVPPSQPTNTSSNIFGQPMDFAGLLGNMNTGGS 254
Q Q + AS + TN T P Q T+ S + G NT G
Sbjct: 318 QTSQSSPASGTTGSTTNTMSTSGGTATSTPAGQSTSGPSLVPGAGASM------FNTPG- 370
Query: 255 FDDMQRQFQQQLMSNPDMMRSMLENPLMQQLLQS----PEVIQTMMQSNPQVRQLIERNP 422
+ QQ+ NP +M++ML P M+ +LQS P++ MM +NP L NP
Sbjct: 371 ----MQSLLQQITENPQLMQNMLSAPYMRSMLQSLSQNPDLAAQMMLNNP----LFAGNP 422
Query: 423 EVGHILNN--PSLMRQ-----TMEMMRNPAMMQELMRHHDRALLNAEAFPG 554
++ + P+ ++Q T+ M NP MQ L++ A PG
Sbjct: 423 QLQEQMRQQLPTFLQQMQNPDTLSAMSNPRAMQALLQIQQGLQTLATEAPG 473
>sp|Q9UMX0|UBQL1_HUMAN Ubiquilin-1 (Protein linking IAP with cytoskeleton-1) (PLIC-1)
(hPLIC-1)
Length = 589
Score = 221 bits (564), Expect = 1e-57
Identities = 119/250 (47%), Positives = 162/250 (64%), Gaps = 13/250 (5%)
Frame = +3
Query: 3 IFAGKILKDEDKLASSKIVDGVTVHLVVKQLQQQTRASDVPLNQTNFPGTVPVPPSQPTN 182
IFAGKILKD+D L+ I DG+TVHLV+K Q R D QTN G+ S P +
Sbjct: 79 IFAGKILKDQDTLSQHGIHDGLTVHLVIKT---QNRPQDHSAQQTNTAGSNVTTSSTPNS 135
Query: 183 --TSSNIFGQPMDFAGLLG-------NMNTGGSFDDMQRQFQQQLMSNPDMMRSMLENPL 335
TS + P GL G +NT +F ++Q Q Q+QL+SNP+MM ++ENP
Sbjct: 136 NSTSGSATSNPFGLGGLGGLAGLSSLGLNTT-NFSELQSQMQRQLLSNPEMMVQIMENPF 194
Query: 336 MQQLLQSPEVIQTMMQSNPQVRQLIERNPEVGHILNNPSLMRQTMEMMRNPAMMQELMRH 515
+Q +L +P++++ ++ +NPQ++QLI+RNPE+ H+LNNP +MRQT+E+ RNPAMMQE+MR+
Sbjct: 195 VQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHMLNNPDIMRQTLELARNPAMMQEMMRN 254
Query: 516 HDRALLNAEAFPGGMNHLTRLYRDVQEPLMDATT---GTNPFASL-ANRXXXXXXXRHGT 683
DRAL N E+ PGG N L R+Y D+QEP++ A G NPFASL +N T
Sbjct: 255 QDRALSNLESIPGGYNALRRMYTDIQEPMLSAAQEQFGGNPFASLVSNTSSGEGSQPSRT 314
Query: 684 ENNEPLPNPW 713
EN +PLPNPW
Sbjct: 315 ENRDPLPNPW 324
Score = 47.0 bits (110), Expect = 5e-05
Identities = 39/147 (26%), Positives = 62/147 (42%), Gaps = 11/147 (7%)
Frame = +3
Query: 147 GTVPVPPSQPTNTSSNIFGQPMDFAGLLGNMNTGGSFDDMQRQFQQQLMSNPDMMRSMLE 326
GT +T+S GQ L+ + + QQ+ NP +M++ML
Sbjct: 337 GTASTVGGTTGSTASGTSGQSTTAPNLVPGVGASMFNTPGMQSLLQQITENPQLMQNMLS 396
Query: 327 NP----LMQQLLQSPEVIQTMMQSNPQVRQLIERNPEVGHILNN--PSLMRQ-----TME 473
P +MQ L Q+P++ MM +NP L NP++ + P+ ++Q T+
Sbjct: 397 APYMRSMMQSLSQNPDLAAQMMLNNP----LFAGNPQLQEQMRQQLPTFLQQMQNPDTLS 452
Query: 474 MMRNPAMMQELMRHHDRALLNAEAFPG 554
M NP MQ L++ A PG
Sbjct: 453 AMSNPRAMQALLQIQQGLQTLATEAPG 479
>sp|Q9JJP9|UBQL1_RAT Ubiquilin-1 (Protein linking IAP with cytoskeleton-1) (PLIC-1)
Length = 582
Score = 218 bits (554), Expect = 2e-56
Identities = 117/250 (46%), Positives = 166/250 (66%), Gaps = 13/250 (5%)
Frame = +3
Query: 3 IFAGKILKDEDKLASSKIVDGVTVHLVVKQLQQQTRASDVPLNQTNFPG----TVPVPPS 170
IFAGKILKD+D L+ I DG+TVHLV+K Q R D QTN G + P P S
Sbjct: 70 IFAGKILKDQDTLSQHGIHDGLTVHLVIKT---QNRPQDNSAQQTNTTGNSVTSSPAPDS 126
Query: 171 QPTN--TSSNIFGQPMDFAGLLGNMNTG---GSFDDMQRQFQQQLMSNPDMMRSMLENPL 335
PT+ +++ FG GL G + G +F ++Q Q Q+QL+SNP+MM ++ENP
Sbjct: 127 NPTSGPAANSSFGLG-GLGGLAGLSSLGLNTTNFSELQSQMQRQLLSNPEMMVQIMENPF 185
Query: 336 MQQLLQSPEVIQTMMQSNPQVRQLIERNPEVGHILNNPSLMRQTMEMMRNPAMMQELMRH 515
+Q +L +P++++ ++ +NPQ++QLI+RNPE+ H+LNNP++MRQT+E+ RNPAMMQE+MR+
Sbjct: 186 VQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHMLNNPNIMRQTLELARNPAMMQEMMRN 245
Query: 516 HDRALLNAEAFPGGMNHLTRLYRDVQEPLMDATT---GTNPFASLANRXXXXXXXRHG-T 683
+R L N E+ PGG N L R+Y D+QEP+++A G NPFASL + + T
Sbjct: 246 QERDLSNLESIPGGYNALRRMYTDIQEPMLNAAQEQFGGNPFASLVSSPSSAEGTQPSRT 305
Query: 684 ENNEPLPNPW 713
EN +PLPNPW
Sbjct: 306 ENRDPLPNPW 315
Score = 45.1 bits (105), Expect = 2e-04
Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 11/102 (10%)
Frame = +3
Query: 282 QQLMSNPDMMRSMLENP----LMQQLLQSPEVIQTMMQSNPQVRQLIERNPEVGHILNN- 446
QQ+ NP +M++ML P +MQ L Q+P++ MM +NP L NP++ +
Sbjct: 376 QQITENPQLMQNMLSAPYMRSMMQSLSQNPDLAAQMMLNNP----LFAGNPQLQEQMRQQ 431
Query: 447 -PSLMRQ-----TMEMMRNPAMMQELMRHHDRALLNAEAFPG 554
P+ ++Q T+ M NP MQ L++ A PG
Sbjct: 432 LPTFLQQMQNPDTLSAMSNPRAMQALLQIQQGLQTLATEAPG 473
>sp|Q99NB8|UBQL4_MOUSE Ubiquilin-4 (Ataxin-1 ubiquitin-like interacting protein A1U)
Length = 596
Score = 217 bits (552), Expect = 3e-56
Identities = 121/274 (44%), Positives = 163/274 (59%), Gaps = 37/274 (13%)
Frame = +3
Query: 3 IFAGKILKDEDKLASSKIVDGVTVHLVVKQLQQQTR-------------ASDVPLNQTNF 143
IFAGKILKD D L+ I DG+TVHLV+K Q+ ++ P
Sbjct: 55 IFAGKILKDGDTLSQHGIKDGLTVHLVIKTPQKAQDPVTAAASPPSTPDSASAPSTTPAS 114
Query: 144 PGTVPVPPSQPTNTSSNIF--GQPMD----------------FAGLLGNMNTG---GSFD 260
P PV P NT+S+ G P F G+LG + G +F
Sbjct: 115 PAAAPVQPCSSGNTTSDAGSGGGPSPVAAEGPSSATASILSGFGGILGLGSLGLGSANFM 174
Query: 261 DMQRQFQQQLMSNPDMMRSMLENPLMQQLLQSPEVIQTMMQSNPQVRQLIERNPEVGHIL 440
++Q+Q Q+QLMSNP+M+ ++ENPL+Q ++ +P++++ M+ +NPQ++QL+ERNPE+ H+L
Sbjct: 175 ELQQQMQRQLMSNPEMLSQIMENPLVQDMMSNPDLMRHMIMANPQMQQLMERNPEISHML 234
Query: 441 NNPSLMRQTMEMMRNPAMMQELMRHHDRALLNAEAFPGGMNHLTRLYRDVQEPLMDATT- 617
NNP LMRQTME+ RNPAMMQE+MR+ DRAL N E+ PGG N L R+Y D+QEP+ A
Sbjct: 235 NNPELMRQTMELARNPAMMQEMMRNQDRALSNLESVPGGYNALRRMYTDIQEPMFTAARE 294
Query: 618 --GTNPFASLANRXXXXXXXRHGTENNEPLPNPW 713
G NPF+SLA TEN EPLPNPW
Sbjct: 295 QFGNNPFSSLAGNSDNSSSQPLRTENREPLPNPW 328
Score = 40.8 bits (94), Expect = 0.004
Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 21/139 (15%)
Frame = +3
Query: 147 GTVPVPPSQPTNTSSNIFGQPMDFAGLLGNMNTGGSFDDMQRQ-FQQQLMSNPDMMRSML 323
GT SQ T SN FG A LG+ G F+ + Q QQ+ NP +M++++
Sbjct: 344 GTGGSGTSQVHPTVSNPFGIN---AASLGS----GMFNSPEMQALLQQISENPQLMQNVI 396
Query: 324 ENP----LMQQLLQSPEVIQTMM------QSNPQVRQLIE----------RNPEVGHILN 443
P +MQ L Q+P+ MM NPQ+++ + +NPE IL
Sbjct: 397 SAPYMRTMMQTLAQNPDFAAQMMVNVPLFAGNPQLQEQLRLQLPVFLQQMQNPESLSILT 456
Query: 444 NPSLMRQTMEMMRNPAMMQ 500
NP M+ +++ + +Q
Sbjct: 457 NPRAMQALLQIQQGLQTLQ 475
>sp|Q9UHD9|UBQL2_HUMAN Ubiquilin-2 (Protein linking IAP with cytoskeleton-2) (PLIC-2)
(hPLIC-2) (Ubiquitin-like product Chap1/Dsk2) (DSK2
homolog) (Chap1)
Length = 624
Score = 216 bits (550), Expect = 5e-56
Identities = 116/247 (46%), Positives = 160/247 (64%), Gaps = 10/247 (4%)
Frame = +3
Query: 3 IFAGKILKDEDKLASSKIVDGVTVHLVVKQLQQQTRASDVPLNQTNFPGTVPVPP---SQ 173
IFAGKILKD+D L I DG+TVHLV+K + S P N T P S
Sbjct: 75 IFAGKILKDQDTLIQHGIHDGLTVHLVIKSQNRPQGQSTQPSNAAGTNTTSASTPRSNST 134
Query: 174 PTNTSSNIFGQPMDFAGLLGNMNTGGS---FDDMQRQFQQQLMSNPDMMRSMLENPLMQQ 344
P +T+SN FG GL G + G S F ++Q Q QQQLM++P+MM ++ENP +Q
Sbjct: 135 PISTNSNPFGLG-SLGGLAGLSSLGLSSTNFSELQSQMQQQLMASPEMMIQIMENPFVQS 193
Query: 345 LLQSPEVIQTMMQSNPQVRQLIERNPEVGHILNNPSLMRQTMEMMRNPAMMQELMRHHDR 524
+L +P++++ ++ +NPQ++QLI+RNPE+ H+LNNP +MRQT+E+ RNPAMMQE+MR+ D
Sbjct: 194 MLSNPDLMRQLIMANPQMQQLIQRNPEISHLLNNPDIMRQTLEIARNPAMMQEMMRNQDL 253
Query: 525 ALLNAEAFPGGMNHLTRLYRDVQEPLMDATT---GTNPFASLANRXXXXXXXRHG-TENN 692
AL N E+ PGG N L R+Y D+QEP+++A G NPFAS+ + + TEN
Sbjct: 254 ALSNLESIPGGYNALRRMYTDIQEPMLNAAQEQFGGNPFASVGSSSSSGEGTQPSRTENR 313
Query: 693 EPLPNPW 713
+PLPNPW
Sbjct: 314 DPLPNPW 320
Score = 45.1 bits (105), Expect = 2e-04
Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 12/137 (8%)
Frame = +3
Query: 180 NTSSNIFGQPMDFAGLLGNM-NTGGSFDDMQRQFQQQLMSNPDMMRSMLENP----LMQQ 344
N+SSN G + A + ++ +T G + QQ+ NP ++++ML P +MQ
Sbjct: 344 NSSSNATGNTVAAANYVASIFSTPG-----MQSLLQQITENPQLIQNMLSAPYMRSMMQS 398
Query: 345 LLQSPEVIQTMMQSNPQVRQLIERNPEVGHILNN--PSLMRQ-----TMEMMRNPAMMQE 503
L Q+P++ MM ++P L NP++ + P+ ++Q T+ M NP MQ
Sbjct: 399 LSQNPDLAAQMMLNSP----LFTANPQLQEQMRPQLPAFLQQMQNPDTLSAMSNPRAMQA 454
Query: 504 LMRHHDRALLNAEAFPG 554
LM+ A PG
Sbjct: 455 LMQIQQGLQTLATEAPG 471
>sp|Q9NRR5|UBQL4_HUMAN Ubiquilin-4 (Ataxin-1 ubiquitin-like interacting protein A1U)
Length = 601
Score = 216 bits (549), Expect = 7e-56
Identities = 121/279 (43%), Positives = 164/279 (58%), Gaps = 42/279 (15%)
Frame = +3
Query: 3 IFAGKILKDEDKLASSKIVDGVTVHLVVKQLQQQ------TRASDVPLNQTNFPGTVPVP 164
IFAGKILKD D L I DG+TVHLV+K Q+ T +S + + P T P
Sbjct: 55 IFAGKILKDGDTLNQHGIKDGLTVHLVIKTPQKAQDPAAATASSPSTPDPASAPSTTPAS 114
Query: 165 PSQPTNTSSNIF-----------------------GQPM-------DFAGLLGNMNTG-- 248
P+ P S++ G P F G+LG + G
Sbjct: 115 PATPAQPSTSGSASSDAGSGSRRSSGGGPSPGAGEGSPSATASILSGFGGILGLGSLGLG 174
Query: 249 -GSFDDMQRQFQQQLMSNPDMMRSMLENPLMQQLLQSPEVIQTMMQSNPQVRQLIERNPE 425
+F ++Q+Q Q+QLMSNP+M+ ++ENPL+Q ++ +P++++ M+ +NPQ++QL+ERNPE
Sbjct: 175 SANFMELQQQMQRQLMSNPEMLSQIMENPLVQDMMSNPDLMRHMIMANPQMQQLMERNPE 234
Query: 426 VGHILNNPSLMRQTMEMMRNPAMMQELMRHHDRALLNAEAFPGGMNHLTRLYRDVQEPLM 605
+ H+LNNP LMRQTME+ RNPAMMQE+MR+ DRAL N E+ PGG N L R+Y D+QEP+
Sbjct: 235 ISHMLNNPELMRQTMELARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMF 294
Query: 606 DATT---GTNPFASLANRXXXXXXXRHGTENNEPLPNPW 713
A G NPF+SLA TEN EPLPNPW
Sbjct: 295 SAAREQFGNNPFSSLAGNSDSSSSQPLRTENREPLPNPW 333
Score = 40.8 bits (94), Expect = 0.004
Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 21/139 (15%)
Frame = +3
Query: 147 GTVPVPPSQPTNTSSNIFGQPMDFAGLLGNMNTGGSFDDMQRQ-FQQQLMSNPDMMRSML 323
GT SQ T SN FG A LG+ G F+ + Q QQ+ NP +M++++
Sbjct: 349 GTGGSGTSQVHPTVSNPFGIN---AASLGS----GMFNSPEMQALLQQISENPQLMQNVI 401
Query: 324 ENP----LMQQLLQSPEVIQTMM------QSNPQVRQLIE----------RNPEVGHILN 443
P +MQ L Q+P+ MM NPQ+++ + +NPE IL
Sbjct: 402 SAPYMRSMMQTLAQNPDFAAQMMVNVPLFAGNPQLQEQLRLQLPVFLQQMQNPESLSILT 461
Query: 444 NPSLMRQTMEMMRNPAMMQ 500
NP M+ +++ + +Q
Sbjct: 462 NPRAMQALLQIQQGLQTLQ 480
>sp|Q9QZM0|UBQL2_MOUSE Ubiquilin-2 (Protein linking IAP with cytoskeleton-2) (PLIC-2)
(Ubiquitin-like product Chap1/Dsk2) (DSK2 homolog)
(Chap1)
Length = 638
Score = 205 bits (521), Expect = 1e-52
Identities = 113/262 (43%), Positives = 163/262 (62%), Gaps = 25/262 (9%)
Frame = +3
Query: 3 IFAGKILKDEDKLASSKIVDGVTVHLVVK-----QLQQQTRASDVPLNQTNFPGTV---- 155
IFAGKILKD+D L I DG+TVHLV+K Q Q T+ S T T
Sbjct: 75 IFAGKILKDQDTLMQHGIHDGLTVHLVIKSQNRPQGQATTQPSTTAGTSTTTTTTTTAAA 134
Query: 156 --------PVPPSQPTNTSSNIFGQPMDFAGLLGNMNTGG----SFDDMQRQFQQQLMSN 299
P S PT T+S+ FG G L +++ G +F +++ Q QQQL+++
Sbjct: 135 PAATTSSAPRSSSTPTTTNSSSFG-----LGSLSSLSNLGLNSPNFTELRNQMQQQLLAS 189
Query: 300 PDMMRSMLENPLMQQLLQSPEVIQTMMQSNPQVRQLIERNPEVGHILNNPSLMRQTMEMM 479
P+MM ++ENP +Q +L +P++++ ++ +NPQ++QLI+RNPE+ H+LNNP +MRQT+E+
Sbjct: 190 PEMMIQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHLLNNPDIMRQTLEIA 249
Query: 480 RNPAMMQELMRHHDRALLNAEAFPGGMNHLTRLYRDVQEPLMDATT---GTNPFASLANR 650
RNPAMMQE+MR+ D AL N E+ PGG N L R+Y D+QEP+++A G NPFA++ +
Sbjct: 250 RNPAMMQEMMRNQDLALSNLESIPGGYNALRRMYTDIQEPMLNAAQEQFGGNPFATVGSS 309
Query: 651 XXXXXXXRHG-TENNEPLPNPW 713
+ TEN +PLPNPW
Sbjct: 310 STSGEGTQPSRTENRDPLPNPW 331
Score = 43.5 bits (101), Expect = 6e-04
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 12/138 (8%)
Frame = +3
Query: 177 TNTSSNIFGQPMDFAGLLGNM-NTGGSFDDMQRQFQQQLMSNPDMMRSMLENP----LMQ 341
+++SS G M A + ++ +T G + QQ+ NP ++++ML P +MQ
Sbjct: 357 SSSSSTTAGNTMAAANYVASIFSTPG-----MQSLLQQITENPQLIQNMLSAPYMRSMMQ 411
Query: 342 QLLQSPEVIQTMM------QSNPQVR-QLIERNPEVGHILNNPSLMRQTMEMMRNPAMMQ 500
L Q+P++ MM SNPQ++ Q+ + P + NP +T+ M NP MQ
Sbjct: 412 SLSQNPDMAAQMMLSSPLFTSNPQLQEQMRPQLPNFLQQMQNP----ETIAAMSNPRAMQ 467
Query: 501 ELMRHHDRALLNAEAFPG 554
LM+ A PG
Sbjct: 468 ALMQIQQGLQTLATEAPG 485
>sp|Q8C5U9|UBQL3_MOUSE Ubiquilin-3
Length = 658
Score = 189 bits (479), Expect = 9e-48
Identities = 102/246 (41%), Positives = 152/246 (61%), Gaps = 9/246 (3%)
Frame = +3
Query: 3 IFAGKILKDEDKLASSKIVDGVTVHLVVKQLQQQTRASDVPLNQTNFPGTVPVPPSQPTN 182
IFAGKILKD D LA + DG+TVHLV+K +Q++T ++ P + PG P P P +
Sbjct: 64 IFAGKILKDPDSLAQCGVRDGLTVHLVIK-MQRRTIGTECPSPPVSIPG--PNPGEIPQS 120
Query: 183 TSS-NIFGQPMDFAGLLGNMN----TGGSFDDMQRQFQQQLMSNPDMMRSMLENPLMQQL 347
+S ++ G P G+L ++ T GSF D Q +S P+++ ++++P +Q L
Sbjct: 121 SSVYSVDGSPSFSLGVLTGLSGLGLTSGSFSDQPGSLMWQHISVPELVAQLVDDPFIQGL 180
Query: 348 LQSPEVIQTMMQSNPQVRQLIERNPEVGHILNNPSLMRQTMEMMRNPAMMQELMRHHDRA 527
L + +++ ++ NP ++ LI++NPE+GHILNNP +MRQTME +RNP+MMQE+MR DRA
Sbjct: 181 LSNTGLVRQLVLDNPHMQHLIQQNPEIGHILNNPEIMRQTMEFLRNPSMMQEMMRSQDRA 240
Query: 528 LLNAEAFPGGMNHLTRLYRDVQEPLMDATT---GTNPFASLANRXXXXXXXRHG-TENNE 695
L N E+ PGG N L +Y D+ +P+++A G NPF + + TEN +
Sbjct: 241 LSNLESIPGGYNVLRTMYTDIMDPMLNAVQEQFGGNPFVTATTASTTTTSSQPSRTENCD 300
Query: 696 PLPNPW 713
PLPNPW
Sbjct: 301 PLPNPW 306
>sp|Q9H347|UBQL3_HUMAN Ubiquilin-3
Length = 655
Score = 175 bits (443), Expect = 1e-43
Identities = 100/250 (40%), Positives = 146/250 (58%), Gaps = 13/250 (5%)
Frame = +3
Query: 3 IFAGKILKDEDKLASSKIVDGVTVHLVVKQ----LQQQTRASDVPLNQTNFPGTVPVPPS 170
IFAGKILKD D LA + DG+TVHLV+K+ + + A+ VP Q PG++P P S
Sbjct: 64 IFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHRAMGNECPAASVP-TQGPSPGSLPQPSS 122
Query: 171 -QPTNTSSNIFGQPMDFAGLLGNMNTGG----SFDDMQRQFQQQLMSNPDMMRSMLENPL 335
P + G P GLL ++ G F D +Q +S P+ + ++++P
Sbjct: 123 IYPAD------GPPAFSLGLLTGLSRLGLAYRGFPDQPSSLMRQHVSVPEFVTQLIDDPF 176
Query: 336 MQQLLQSPEVIQTMMQSNPQVRQLIERNPEVGHILNNPSLMRQTMEMMRNPAMMQELMRH 515
+ LL + +++ ++ NP ++QLI+ NPE+GHILNNP +MRQT+E +RNPAMMQE++R
Sbjct: 177 IPGLLSNTGLVRQLVLDNPHMQQLIQHNPEIGHILNNPEIMRQTLEFLRNPAMMQEMIRS 236
Query: 516 HDRALLNAEAFPGGMNHLTRLYRDVQEPLMDATT---GTNPFASLANRXXXXXXXRHG-T 683
DR L N E+ PGG N L +Y D+ +P+++A G NPFA+ +
Sbjct: 237 QDRVLSNLESIPGGYNVLCTMYTDIMDPMLNAVQEQFGGNPFATATTDNATTTTSQPSRM 296
Query: 684 ENNEPLPNPW 713
EN +PLPNPW
Sbjct: 297 ENCDPLPNPW 306
>sp|P48510|DSK2_YEAST Ubiquitin-like protein DSK2
Length = 373
Score = 70.9 bits (172), Expect = 4e-12
Identities = 75/248 (30%), Positives = 109/248 (43%), Gaps = 33/248 (13%)
Frame = +3
Query: 3 IFAGKILKDEDKLASSKIVDGVTVHLVVKQLQQQTRASDVPLNQTNFPGTVPVPPSQPTN 182
I++GKILKD+ + S I DG +VHLV Q + QT AS N G + P
Sbjct: 45 IYSGKILKDDQTVESYHIQDGHSVHLVKSQPKPQT-ASAAGANNATATGAAAGTGATPNM 103
Query: 183 TSSNIFG-QPM------DFAGLLGNMNTGGSFDDMQRQFQQQLMSNPDMMRSMLENPL-- 335
+S G P+ +AG L NM + F +N D + M+ENP+
Sbjct: 104 SSGQSRGFNPLADLTSARYAGYL-NMPSADMFGPDGGALNND-SNNQDELLRMMENPIFQ 161
Query: 336 --MQQLLQSPEVIQTMMQSNPQV-------RQLIERNPEVGHILNNPSLMRQTMEMMRNP 488
M ++L +P+++ M+QSNPQ+ RQ+++ +P +L NP ++RQ+M+ R
Sbjct: 162 SQMNEMLSNPQMLDFMIQSNPQLQAMGPQARQMLQ-SPMFRQMLTNPDMIRQSMQFAR-- 218
Query: 489 AMMQELMRHHDRALLNAEAFPG--------GMNHLTRLYRDVQEPL-------MDATTGT 623
M + A A AFP G N T + A T
Sbjct: 219 --MMDPNAGMGSAGGAASAFPAPGGDAPEEGSNTNTTSSSNTGNNAGTNAGTNAGANTAA 276
Query: 624 NPFASLAN 647
NPFASL N
Sbjct: 277 NPFASLLN 284
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,620,706
Number of Sequences: 369166
Number of extensions: 1908443
Number of successful extensions: 6181
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6030
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6824907600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)