Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_M21
(564 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q94546|ATU_DROME Another transcription unit protein 213 3e-55
sp|P38439|LEO1_YEAST Protein LEO1 72 9e-13
sp|P56716|RP1_MOUSE Oxygen-regulated protein 1 (Retinitis p... 34 0.29
sp|Q8VDS8|STX18_MOUSE Syntaxin-18 33 0.49
sp|Q8DTQ5|HISZ_STRMU ATP phosphoribosyltransferase regulato... 33 0.64
sp|Q03421|AROA_HAEIN 3-phosphoshikimate 1-carboxyvinyltrans... 31 1.9
sp|Q92WB5|UXUA_RHIME Mannonate dehydratase (D-mannonate hyd... 31 2.4
sp|Q82SM5|FUMC_NITEU Fumarate hydratase class II (Fumarase C) 30 3.2
sp|Q8NHP6|MSPD2_HUMAN Motile sperm domain containing protein 2 30 4.1
sp|Q87Q70|SYT_VIBPA Threonyl-tRNA synthetase (Threonine--tR... 30 4.1
>sp|Q94546|ATU_DROME Another transcription unit protein
Length = 725
Score = 213 bits (541), Expect = 3e-55
Identities = 100/165 (60%), Positives = 126/165 (76%)
Frame = +3
Query: 66 IEVDFPVIKADLGEEMHLVKLPNFLSVETRPFDPMYYEDEMDESEVQDEEGKTRLKLKVE 245
I+V+ P I ADLG+E H +KLPNFLSV T PFDP YEDE+DE E DEEG+ R+KLKV
Sbjct: 380 IDVEIPRISADLGKEQHFIKLPNFLSVVTHPFDPETYEDEIDEEETMDEEGRQRIKLKVS 439
Query: 246 NTIRWRIAKDSEGQPILDENDQPKRESNARMIRWSDGSLSLHLGREIFDVHTTDISADHN 425
NTIRWR +++G + RESNAR +RWSDGS+SLHLG EIFD + + DHN
Sbjct: 440 NTIRWREYMNNKGDMV--------RESNARFVRWSDGSMSLHLGNEIFDAYRQPLLGDHN 491
Query: 426 HLFVREGSGLQAQAIFTSKLGFRPHSTDSFTHRKLTLSLADKTHK 560
HLFVR+G+GLQ Q++F +KL FRPHST+SFTH+K+T+SLAD++ K
Sbjct: 492 HLFVRQGTGLQGQSVFRTKLTFRPHSTESFTHKKMTMSLADRSSK 536
>sp|P38439|LEO1_YEAST Protein LEO1
Length = 464
Score = 72.0 bits (175), Expect = 9e-13
Identities = 48/161 (29%), Positives = 82/161 (50%), Gaps = 10/161 (6%)
Frame = +3
Query: 108 EMHLVKLPNFLSVETRPFDPMYYEDEMDE--SEVQDEEGKTRLKLKVENTIRWRIAKDSE 281
E+ ++PNFL+++ PFDP +E +++E S E + +L ENT+RWR ++D +
Sbjct: 167 EIFYARIPNFLTIDPIPFDPPSFEAKVNERASNSASREDQLDDRLIDENTVRWRYSRDKD 226
Query: 282 GQPILDENDQPKRESNARMIRWSDGSLSLHLGREIFDVHTTD-------ISADHNHLF-V 437
+ESN ++++WSDG+ SL +G E D+ D +S D L
Sbjct: 227 QHVF--------KESNTQIVQWSDGTYSLKVGEECTDILVNDTSNTFLTVSHDQQELIQC 278
Query: 438 REGSGLQAQAIFTSKLGFRPHSTDSFTHRKLTLSLADKTHK 560
EG ++ L F P ST+S H+KL+ ++ + +
Sbjct: 279 YEGGEIK------KTLMFIPTSTNSKIHQKLSKAVIRRNQR 313
>sp|P56716|RP1_MOUSE Oxygen-regulated protein 1 (Retinitis pigmentosa RP1 protein
homolog)
Length = 2095
Score = 33.9 bits (76), Expect = 0.29
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 9/75 (12%)
Frame = +3
Query: 132 NFLSVETRPFDPMYY---EDEMDESEVQDEEG------KTRLKLKVENTIRWRIAKDSEG 284
N+L++ET + ED++++S V +++G K R K+K E T++W + G
Sbjct: 299 NYLALETHESQSLSTYPSEDDVEKSIVFNQDGTMTVVMKVRFKIKEEETVKWTTTVNRAG 358
Query: 285 QPILDENDQPKRESN 329
L ND+ ++S+
Sbjct: 359 ---LSNNDEKNKKSS 370
>sp|Q8VDS8|STX18_MOUSE Syntaxin-18
Length = 308
Score = 33.1 bits (74), Expect = 0.49
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 11/104 (10%)
Frame = +3
Query: 207 DEEGKTRLKLKVENTIRWRIAKDSEGQPILDE-NDQPKRESNARMIRWSDGSLSLHLGRE 383
+ E T+ K +++DSEG+P +E ++P ES + W DG L E
Sbjct: 144 EPEPHTKRKDSTSEKAPQNVSQDSEGKPAAEELPEKPLAESQPELGTWGDGKGEDELSPE 203
Query: 384 ---IFDVHTTDISADHNHLF--VREGSG-----LQAQAIFTSKL 485
+F+ + + N LF VR+ G + Q IFT K+
Sbjct: 204 EIQMFEQENQRLIGEMNSLFDEVRQIEGKVVEISRLQEIFTEKV 247
>sp|Q8DTQ5|HISZ_STRMU ATP phosphoribosyltransferase regulatory subunit
Length = 320
Score = 32.7 bits (73), Expect = 0.64
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = +3
Query: 381 EIFDVHTTDISADHNHLFVREGSGLQAQAIFTSKLG 488
E F+V D+S++H HLF ++G+ L + TS++G
Sbjct: 46 EHFEVFADDVSSEHYHLFDKKGNLLSLRPDITSQIG 81
>sp|Q03421|AROA_HAEIN 3-phosphoshikimate 1-carboxyvinyltransferase
(5-enolpyruvylshikimate-3-phosphate synthase) (EPSP
synthase) (EPSPS)
Length = 432
Score = 31.2 bits (69), Expect = 1.9
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = -2
Query: 548 VGERERQLAVRERVGRVGAEPELAGEDRLRLQPAPL 441
V E +R A+ + +VGAE E GED +R+QP PL
Sbjct: 342 VKETDRLTAMATELRKVGAEVE-GGEDFIRIQPLPL 376
>sp|Q92WB5|UXUA_RHIME Mannonate dehydratase (D-mannonate hydrolase)
Length = 402
Score = 30.8 bits (68), Expect = 2.4
Identities = 29/94 (30%), Positives = 40/94 (42%), Gaps = 10/94 (10%)
Frame = +3
Query: 51 GDDGAIEV-DFPVIKADLGEEMHLVKLPNFLSVETRPFDPMYYEDEMDE---------SE 200
G GA+ D P + +H V L N L E R +YEDE E +E
Sbjct: 273 GSLGALAANDLPAMTRQFASRIHFVHLRNVLREEVRT-PCSFYEDEHLEGDTDMVAVIAE 331
Query: 201 VQDEEGKTRLKLKVENTIRWRIAKDSEGQPILDE 302
+ EE + R +V++ I R GQ ILD+
Sbjct: 332 LLQEEQRRRAAGRVDHQIPMR---PDHGQEILDD 362
>sp|Q82SM5|FUMC_NITEU Fumarate hydratase class II (Fumarase C)
Length = 462
Score = 30.4 bits (67), Expect = 3.2
Identities = 15/29 (51%), Positives = 21/29 (72%)
Frame = -2
Query: 95 RLDHGEIHLDRAVVPHLVRLWLVGSILGT 9
+LDHG HL+ A+ PHL+ L L G+ +GT
Sbjct: 207 QLDHGLAHLESAL-PHLLELALGGTAVGT 234
>sp|Q8NHP6|MSPD2_HUMAN Motile sperm domain containing protein 2
Length = 518
Score = 30.0 bits (66), Expect = 4.1
Identities = 20/72 (27%), Positives = 33/72 (45%)
Frame = +3
Query: 108 EMHLVKLPNFLSVETRPFDPMYYEDEMDESEVQDEEGKTRLKLKVENTIRWRIAKDSEGQ 287
E H +S R F+ Y D+ D+ + +D E + VE+ + WR E
Sbjct: 3 ENHAQNKAKLISETRRRFEAEYVTDKSDKYDARDVERLQQDDNWVESYLSWRHNIVDETL 62
Query: 288 PILDENDQPKRE 323
+LDE+ Q ++E
Sbjct: 63 KMLDESFQWRKE 74
>sp|Q87Q70|SYT_VIBPA Threonyl-tRNA synthetase (Threonine--tRNA ligase) (ThrRS)
Length = 642
Score = 30.0 bits (66), Expect = 4.1
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 16/61 (26%)
Frame = +3
Query: 171 YYEDEMDESEVQDEEGKTRLKLK---------VENTIRWRIAKD---SEGQP----ILDE 302
YY+ ++DES Q++ K ++K V+ + W+ A+D S G+P ILDE
Sbjct: 104 YYDIDLDESLTQEDLEKIEKRMKELAKTKYEVVKKKVSWQEARDTFESRGEPYKVEILDE 163
Query: 303 N 305
N
Sbjct: 164 N 164
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,713,046
Number of Sequences: 369166
Number of extensions: 838810
Number of successful extensions: 3387
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3372
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4078830820
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)