Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_M16
(138 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P02829|HSP82_YEAST ATP-dependent molecular chaperone HSP... 32 0.59
sp|Q58305|FLAD_METJA Putative flagella-related protein D 29 2.9
sp|P15108|HSC82_YEAST ATP-dependent molecular chaperone HSC... 28 6.5
sp|O35142|COPB2_RAT Coatomer beta' subunit (Beta'-coat prot... 28 8.5
sp|Q4UKL4|HSCB_RICFE Co-chaperone protein hscB homolog 28 8.5
>sp|P02829|HSP82_YEAST ATP-dependent molecular chaperone HSP82 (Heat shock protein Hsp90
heat inducible isoform) (82 kDa heat shock protein)
Length = 709
Score = 31.6 bits (70), Expect = 0.59
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = +1
Query: 1 EVVLPDHDTIKQEKTEQELKDEIEKGTKLKHVETTEK 111
EV +P+ + +EK ++E KDE +K KL+ V+ E+
Sbjct: 216 EVPIPEEEKKDEEKKDEEKKDEDDKKPKLEEVDEEEE 252
>sp|Q58305|FLAD_METJA Putative flagella-related protein D
Length = 342
Score = 29.3 bits (64), Expect = 2.9
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = +1
Query: 19 HDTIKQEKTEQELKDEIEKGTKLKHVETTEKT 114
H+ +++ KT+ E+K E++K KLK E +++
Sbjct: 176 HEKVEETKTKGEIKKEVKKEVKLKKYELPKES 207
>sp|P15108|HSC82_YEAST ATP-dependent molecular chaperone HSC82 (Heat shock protein Hsp90
constitutive isoform) (82 kDa heat shock cognate
protein)
Length = 705
Score = 28.1 bits (61), Expect = 6.5
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +1
Query: 1 EVVLPDHDTIKQEKTEQELKDEIEKGTKLKHVETTEKTVLPNEEDI 138
EV +P+ +EK ++E KDE +K KL+ V+ E+ P + +
Sbjct: 216 EVPIPE-----EEKKDEEKKDEDDKKPKLEEVDEEEEEKKPKTKKV 256
>sp|O35142|COPB2_RAT Coatomer beta' subunit (Beta'-coat protein) (Beta'-COP) (p102)
Length = 905
Score = 27.7 bits (60), Expect = 8.5
Identities = 15/45 (33%), Positives = 30/45 (66%)
Frame = +1
Query: 4 VVLPDHDTIKQEKTEQELKDEIEKGTKLKHVETTEKTVLPNEEDI 138
V++ T K+EK+ QEL+D+++ +L+ ++TT+ + +EDI
Sbjct: 862 VIMASQTTHKEEKSFQELEDDLDT-MELEDIDTTDINL---DEDI 902
>sp|Q4UKL4|HSCB_RICFE Co-chaperone protein hscB homolog
Length = 166
Score = 27.7 bits (60), Expect = 8.5
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 22 DTIKQEKTEQELKDEIEKGTKLKHVET 102
D++KQ EQ L D I K +KLK++ T
Sbjct: 127 DSLKQAFEEQNLSDTIIKTSKLKYIGT 153
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.300 0.125 0.323
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,774,958
Number of Sequences: 369166
Number of extensions: 147415
Number of successful extensions: 562
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 68,354,980
effective HSP length: 19
effective length of database: 64,845,015
effective search space used: 1685970390
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.6 bits)