Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_M13
(151 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q90835|EF1A_CHICK Elongation factor 1-alpha 1 (EF-1-alph... 92 4e-19
sp|P10126|EF1A1_MOUSE Elongation factor 1-alpha 1 (EF-1-alp... 92 5e-19
sp|P68105|EF1A1_RABIT Elongation factor 1-alpha 1 (EF-1-alp... 92 5e-19
sp|Q5R4R8|EF1A1_PONPY Elongation factor 1-alpha 1 (EF-1-alp... 92 5e-19
sp|P13549|EF1A0_XENLA Elongation factor 1-alpha, somatic fo... 91 6e-19
sp|P08736|EF11_DROME Elongation factor 1-alpha (EF-1-alpha)... 89 4e-18
sp|P29520|EF1A_BOMMO Elongation factor 1-alpha (EF-1-alpha) 87 2e-17
sp|Q26487|EF1A_SPOFR Elongation factor 1-alpha (EF-1-alpha) 86 3e-17
sp|P84316|EF1A_HELZE Elongation factor 1-alpha (EF-1-alpha)... 86 3e-17
sp|P17507|EF1A2_XENLA Elongation factor 1-alpha, oocyte for... 84 8e-17
>sp|Q90835|EF1A_CHICK Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor Tu)
(EF-Tu)
Length = 462
Score = 92.0 bits (227), Expect = 4e-19
Identities = 36/49 (73%), Positives = 45/49 (91%)
Frame = +3
Query: 3 KEVGSYLKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWYKGWEITRKN 149
KEV +Y+KK+GY PD VAFVPISGWNGDNM+E S+NMPW+KGW++TRK+
Sbjct: 172 KEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSSNMPWFKGWKVTRKD 220
>sp|P10126|EF1A1_MOUSE Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P62630|EF1A1_RAT Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P62629|EF1A1_CRIGR Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 91.7 bits (226), Expect = 5e-19
Identities = 36/49 (73%), Positives = 44/49 (89%)
Frame = +3
Query: 3 KEVGSYLKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWYKGWEITRKN 149
KEV +Y+KK+GY PD VAFVPISGWNGDNM+E S NMPW+KGW++TRK+
Sbjct: 172 KEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMPWFKGWKVTRKD 220
>sp|P68105|EF1A1_RABIT Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|Q5R1X2|EF1A1_PANTR Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P68103|EF1A1_BOVIN Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P68104|EF1A1_HUMAN Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|Q66RN5|EF1A1_FELCA Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 91.7 bits (226), Expect = 5e-19
Identities = 36/49 (73%), Positives = 44/49 (89%)
Frame = +3
Query: 3 KEVGSYLKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWYKGWEITRKN 149
KEV +Y+KK+GY PD VAFVPISGWNGDNM+E S NMPW+KGW++TRK+
Sbjct: 172 KEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMPWFKGWKVTRKD 220
>sp|Q5R4R8|EF1A1_PONPY Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 91.7 bits (226), Expect = 5e-19
Identities = 36/49 (73%), Positives = 44/49 (89%)
Frame = +3
Query: 3 KEVGSYLKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWYKGWEITRKN 149
KEV +Y+KK+GY PD VAFVPISGWNGDNM+E S NMPW+KGW++TRK+
Sbjct: 172 KEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMPWFKGWKVTRKD 220
>sp|P13549|EF1A0_XENLA Elongation factor 1-alpha, somatic form (EF-1-alpha-S)
Length = 462
Score = 91.3 bits (225), Expect = 6e-19
Identities = 37/48 (77%), Positives = 43/48 (89%)
Frame = +3
Query: 3 KEVGSYLKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWYKGWEITRK 146
KEV +Y+KK+GY PD VAFVPISGWNGDNM+E S NMPW+KGW+ITRK
Sbjct: 172 KEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSPNMPWFKGWKITRK 219
>sp|P08736|EF11_DROME Elongation factor 1-alpha (EF-1-alpha) (50 kDa female-specific
protein)
Length = 463
Score = 88.6 bits (218), Expect = 4e-18
Identities = 36/48 (75%), Positives = 43/48 (89%)
Frame = +3
Query: 3 KEVGSYLKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWYKGWEITRK 146
KEV SY+KK+GY P AVAFVPISGW+GDNM+E STNMPW+KGW++ RK
Sbjct: 172 KEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTNMPWFKGWKVERK 219
>sp|P29520|EF1A_BOMMO Elongation factor 1-alpha (EF-1-alpha)
Length = 463
Score = 86.7 bits (213), Expect = 2e-17
Identities = 35/48 (72%), Positives = 42/48 (87%)
Frame = +3
Query: 3 KEVGSYLKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWYKGWEITRK 146
KEV SY+KK+GY P AVAFVPISGW+GDNM+E ST MPW+KGW++ RK
Sbjct: 172 KEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERK 219
>sp|Q26487|EF1A_SPOFR Elongation factor 1-alpha (EF-1-alpha)
Length = 413
Score = 85.9 bits (211), Expect = 3e-17
Identities = 35/48 (72%), Positives = 41/48 (85%)
Frame = +3
Query: 3 KEVGSYLKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWYKGWEITRK 146
KEV SY+KK+GY P AVAFVPISGW+GDNM+E ST MPW+KGW + RK
Sbjct: 158 KEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEASTKMPWFKGWNVERK 205
>sp|P84316|EF1A_HELZE Elongation factor 1-alpha (EF-1-alpha)
sp|P84315|EF1A_HELVI Elongation factor 1-alpha (EF-1-alpha)
sp|P84318|EF1A_HELGL Elongation factor 1-alpha (EF-1-alpha)
sp|P84320|EF1A_HELDI Elongation factor 1-alpha (EF-1-alpha)
sp|P84317|EF1A_HELAM Elongation factor 1-alpha (EF-1-alpha)
sp|P84319|EF1A_HELAL Elongation factor 1-alpha (EF-1-alpha)
sp|P84322|EF1A_ANIIF Elongation factor 1-alpha (EF-1-alpha)
sp|P84321|EF1A_ADIBE Elongation factor 1-alpha (EF-1-alpha)
Length = 413
Score = 85.9 bits (211), Expect = 3e-17
Identities = 35/48 (72%), Positives = 41/48 (85%)
Frame = +3
Query: 3 KEVGSYLKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWYKGWEITRK 146
KEV SY+KK+GY P AVAFVPISGW+GDNM+E ST MPW+KGW + RK
Sbjct: 158 KEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEASTKMPWFKGWNVERK 205
>sp|P17507|EF1A2_XENLA Elongation factor 1-alpha, oocyte form (EF-1-alpha-O) (EF-1AO) (42S
p48)
Length = 461
Score = 84.3 bits (207), Expect = 8e-17
Identities = 34/48 (70%), Positives = 41/48 (85%)
Frame = +3
Query: 3 KEVGSYLKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWYKGWEITRK 146
KEV +Y+KK+GY P V FVPISGW+GDNM+E STNMPW+KGW+I RK
Sbjct: 172 KEVSAYIKKIGYNPATVPFVPISGWHGDNMLEASTNMPWFKGWKIERK 219
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,163,061
Number of Sequences: 369166
Number of extensions: 297748
Number of successful extensions: 978
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 68,354,980
effective HSP length: 22
effective length of database: 64,290,810
effective search space used: 1735851870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)