Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_M09
(528 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8WW22|DNJA4_HUMAN DnaJ homolog subfamily A member 4 111 1e-24
sp|Q9JMC3|DNJA4_MOUSE DnaJ homolog subfamily A member 4 (Mm... 109 4e-24
sp|P42824|DNJH2_ALLPO DnaJ protein homolog 2 107 1e-23
sp|P31689|DNJA1_HUMAN DnaJ homolog subfamily A member 1 (He... 105 7e-23
sp|P63036|DNJA1_RAT DnaJ homolog subfamily A member 1 (DnaJ... 105 7e-23
sp|Q03363|DNJH1_ALLPO DnaJ protein homolog 1 (DNAJ-1) 104 1e-22
sp|Q94AW8|DNAJ3_ARATH Chaperone protein dnaJ 3 (AtJ3) (AtDjA3) 103 3e-22
sp|P42825|DNAJ2_ARATH Chaperone protein dnaJ 2 (AtDjA2) 102 6e-22
sp|Q04960|DNJH_CUCSA DnaJ protein homolog (DNAJ-1) 100 2e-21
sp|P43644|DNJH_ATRNU DnaJ protein homolog ANJ1 98 1e-20
>sp|Q8WW22|DNJA4_HUMAN DnaJ homolog subfamily A member 4
Length = 397
Score = 111 bits (277), Expect = 1e-24
Identities = 61/138 (44%), Positives = 87/138 (63%)
Frame = +3
Query: 3 SLCGFKRTITTLDNRILVVETKPGEVIKNLEYRAIDNEGMPKYKSPFEQGRLIIQFDVVF 182
+LCGFK+TI TLDNRILV+ +K GEVIK+ + R + +EGMP YK+P E+G LIIQF V+F
Sbjct: 270 ALCGFKKTIKTLDNRILVITSKAGEVIKHGDLRCVRDEGMPIYKAPLEKGILIIQFLVIF 329
Query: 183 PENNFLPTDKLNKLRSILPPSQFSSSLDNMKEAEECVLHPYDPSMANSKSQDRYHERHHV 362
PE ++L +KL +L ++LPP Q D+M + E L + P+ N + +
Sbjct: 330 PEKHWLSLEKLPQLEALLPPRQKVRITDDMDQVE---LKEFCPNEQN------WRQHREA 380
Query: 363 YDSDDEGGMPGGAQRVQC 416
Y+ D++G G VQC
Sbjct: 381 YEEDEDGPQAG----VQC 394
>sp|Q9JMC3|DNJA4_MOUSE DnaJ homolog subfamily A member 4 (MmDjA4)
Length = 397
Score = 109 bits (273), Expect = 4e-24
Identities = 60/138 (43%), Positives = 86/138 (62%)
Frame = +3
Query: 3 SLCGFKRTITTLDNRILVVETKPGEVIKNLEYRAIDNEGMPKYKSPFEQGRLIIQFDVVF 182
+LCGFK+TI TLD+R+LV+ +K GEVIK+ + + I NEGMP YK+P E+G +IIQF VVF
Sbjct: 270 ALCGFKKTIKTLDDRVLVISSKSGEVIKHGDLKCIRNEGMPIYKAPLEKGVMIIQFLVVF 329
Query: 183 PENNFLPTDKLNKLRSILPPSQFSSSLDNMKEAEECVLHPYDPSMANSKSQDRYHERHHV 362
PE +L +KL +L ++LPP Q D+M + E L ++P ++ + +
Sbjct: 330 PEKQWLSQEKLPQLEALLPPRQKVRITDDMDQVE---LKEFNP------NEQSWRQHREA 380
Query: 363 YDSDDEGGMPGGAQRVQC 416
Y+ DDE G VQC
Sbjct: 381 YEEDDEEPRAG----VQC 394
>sp|P42824|DNJH2_ALLPO DnaJ protein homolog 2
Length = 418
Score = 107 bits (268), Expect = 1e-23
Identities = 61/141 (43%), Positives = 91/141 (64%), Gaps = 2/141 (1%)
Frame = +3
Query: 3 SLCGFKRTITTLDNRILVVETKPGEVIKNLEYRAIDNEGMPKYKSPFEQGRLIIQFDVVF 182
+LCGF+ +T LDNR L++++ PGEVIK +++ I++EGMP Y+ PF +G+L I F V F
Sbjct: 283 ALCGFQFVLTHLDNRQLLIKSNPGEVIKPDQFKGINDEGMPMYQRPFMRGKLYIHFSVDF 342
Query: 183 PENNFLPTDKLNKLRSILPPSQFSSSLDNMK--EAEECVLHPYDPSMANSKSQDRYHERH 356
P++ L D+ L S+L PS+ +S L +M+ E EE +H D ++ + ++ +
Sbjct: 343 PDS--LTPDQCKALESVL-PSRNASRLTDMEIDECEETTMH--DVNIEEEMRRKQHQQAQ 397
Query: 357 HVYDSDDEGGMPGGAQRVQCA 419
YD DDEG GGAQRVQCA
Sbjct: 398 EAYDEDDEG--HGGAQRVQCA 416
>sp|P31689|DNJA1_HUMAN DnaJ homolog subfamily A member 1 (Heat shock 40 kDa protein 4)
(DnaJ protein homolog 2) (HSJ-2) (HSDJ)
Length = 397
Score = 105 bits (262), Expect = 7e-23
Identities = 56/134 (41%), Positives = 82/134 (61%)
Frame = +3
Query: 3 SLCGFKRTITTLDNRILVVETKPGEVIKNLEYRAIDNEGMPKYKSPFEQGRLIIQFDVVF 182
+LCGF++ I+TLDNR +V+ + PG+++K+ + + + NEGMP Y+ P+E+GRLII+F V F
Sbjct: 269 ALCGFQKPISTLDNRTIVITSHPGQIVKHGDIKCVLNEGMPIYRRPYEKGRLIIEFKVNF 328
Query: 183 PENNFLPTDKLNKLRSILPPSQFSSSLDNMKEAEECVLHPYDPSMANSKSQDRYHERHHV 362
PEN FL DKL+ L +LP + D M + E L +DP+ + R H
Sbjct: 329 PENGFLSPDKLSLLEKLLPERKEVEETDEMDQVE---LVDFDPN-----QERRRHYNGEA 380
Query: 363 YDSDDEGGMPGGAQ 404
Y+ DDE GG Q
Sbjct: 381 YE-DDEHHPRGGVQ 393
>sp|P63036|DNJA1_RAT DnaJ homolog subfamily A member 1 (DnaJ-like protein 1)
sp|P63037|DNJA1_MOUSE DnaJ homolog subfamily A member 1 (Heat shock 40 kDa protein 4)
(DnaJ protein homolog 2) (HSJ-2)
Length = 397
Score = 105 bits (262), Expect = 7e-23
Identities = 56/134 (41%), Positives = 82/134 (61%)
Frame = +3
Query: 3 SLCGFKRTITTLDNRILVVETKPGEVIKNLEYRAIDNEGMPKYKSPFEQGRLIIQFDVVF 182
+LCGF++ I+TLDNR +V+ + PG+++K+ + + + NEGMP Y+ P+E+GRLII+F V F
Sbjct: 269 ALCGFQKPISTLDNRTIVITSHPGQIVKHGDIKCVLNEGMPIYRRPYEKGRLIIEFKVNF 328
Query: 183 PENNFLPTDKLNKLRSILPPSQFSSSLDNMKEAEECVLHPYDPSMANSKSQDRYHERHHV 362
PEN FL DKL+ L +LP + D M + E L +DP+ + R H
Sbjct: 329 PENGFLSPDKLSLLEKLLPERKEVEETDEMDQVE---LVDFDPN-----QERRRHYNGEA 380
Query: 363 YDSDDEGGMPGGAQ 404
Y+ DDE GG Q
Sbjct: 381 YE-DDEHHPRGGVQ 393
>sp|Q03363|DNJH1_ALLPO DnaJ protein homolog 1 (DNAJ-1)
Length = 397
Score = 104 bits (260), Expect = 1e-22
Identities = 58/140 (41%), Positives = 86/140 (61%), Gaps = 1/140 (0%)
Frame = +3
Query: 3 SLCGFKRTITTLDNRILVVETKPGEVIKNLEYRAIDNEGMPKYKSPFEQGRLIIQFDVVF 182
+LCGF+ +T LD R L++++ PGEV+K +++AI++EGMP Y+ PF +G+L IQF V F
Sbjct: 262 ALCGFQFVLTHLDGRQLLIKSNPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIQFLVDF 321
Query: 183 PENNFLPTDKLNKLRSILPPSQFSSSLD-NMKEAEECVLHPYDPSMANSKSQDRYHERHH 359
P++ L D+ + S+LP S S D + E EE +H D ++ + ++
Sbjct: 322 PDS--LTPDQCKVIESVLPRSASSQLTDMEIDECEETTMH--DVNIEEEMRRKQHQHAQE 377
Query: 360 VYDSDDEGGMPGGAQRVQCA 419
YD DDEG GG QRVQCA
Sbjct: 378 AYDEDDEG--HGGGQRVQCA 395
>sp|Q94AW8|DNAJ3_ARATH Chaperone protein dnaJ 3 (AtJ3) (AtDjA3)
Length = 420
Score = 103 bits (256), Expect = 3e-22
Identities = 58/140 (41%), Positives = 84/140 (60%), Gaps = 1/140 (0%)
Frame = +3
Query: 3 SLCGFKRTITTLDNRILVVETKPGEVIKNLEYRAIDNEGMPKYKSPFEQGRLIIQFDVVF 182
+LCGF+ +T LD R L++++ PGEV+K Y+AI +EGMP Y+ PF +G+L I F V F
Sbjct: 283 ALCGFQFVLTHLDGRSLLIKSNPGEVVKPDSYKAISDEGMPIYQRPFMKGKLYIHFTVEF 342
Query: 183 PENNFLPTDKLNKLRSILP-PSQFSSSLDNMKEAEECVLHPYDPSMANSKSQDRYHERHH 359
P++ L D+ L ++LP PS S + E EE LH D ++ + + +R
Sbjct: 343 PDS--LSPDQTKALEAVLPKPSTAQLSDMEIDECEETTLH--DVNIEDEMRRKAQAQREA 398
Query: 360 VYDSDDEGGMPGGAQRVQCA 419
D D++ PGGAQRVQCA
Sbjct: 399 YDDDDEDDDHPGGAQRVQCA 418
>sp|P42825|DNAJ2_ARATH Chaperone protein dnaJ 2 (AtDjA2)
Length = 419
Score = 102 bits (254), Expect = 6e-22
Identities = 58/140 (41%), Positives = 86/140 (61%), Gaps = 1/140 (0%)
Frame = +3
Query: 3 SLCGFKRTITTLDNRILVVETKPGEVIKNLEYRAIDNEGMPKYKSPFEQGRLIIQFDVVF 182
+LCGF+ +T LD R L++++KPGEV+K Y+AI +EGMP Y+ PF +G+L I F V F
Sbjct: 284 ALCGFQFVLTHLDKRQLLIKSKPGEVVKPDSYKAISDEGMPIYQRPFMKGKLYIHFTVEF 343
Query: 183 PENNFLPTDKLNKLRSILP-PSQFSSSLDNMKEAEECVLHPYDPSMANSKSQDRYHERHH 359
PE+ L D+ + ++LP P++ + S + + EE LH + + + + +
Sbjct: 344 PES--LSPDQTKAIEAVLPKPTKAAISDMEIDDCEETTLHDVN---IEDEMKRKAQAQRE 398
Query: 360 VYDSDDEGGMPGGAQRVQCA 419
YD DDE PGGAQRVQCA
Sbjct: 399 AYD-DDEEDHPGGAQRVQCA 417
>sp|Q04960|DNJH_CUCSA DnaJ protein homolog (DNAJ-1)
Length = 413
Score = 100 bits (250), Expect = 2e-21
Identities = 59/141 (41%), Positives = 87/141 (61%), Gaps = 2/141 (1%)
Frame = +3
Query: 3 SLCGFKRTITTLDNRILVVETKPGEVIKNLEYRAIDNEGMPKYKSPFEQGRLIIQFDVVF 182
SLCGF+ +T LD R L++++ PGEV+K +++AI++EGMP Y+ PF +G+L I F V F
Sbjct: 281 SLCGFQFILTHLDGRQLLIKSLPGEVVKPDQFKAINDEGMPMYQRPFMKGKLYIHFSVEF 340
Query: 183 PENNFLPTDKLNKLRSILPPSQFSSSLDNMK--EAEECVLHPYDPSMANSKSQDRYHERH 356
P++ L ++ L +LPP + S L +M+ E EE LH N + + R +
Sbjct: 341 PDS--LNPEQCKALEGVLPP-RTSVQLSDMELDECEETTLHD-----VNIEEEMRRKQAQ 392
Query: 357 HVYDSDDEGGMPGGAQRVQCA 419
YD D++ M GGAQRVQCA
Sbjct: 393 EAYDEDED--MHGGAQRVQCA 411
>sp|P43644|DNJH_ATRNU DnaJ protein homolog ANJ1
Length = 417
Score = 97.8 bits (242), Expect = 1e-20
Identities = 54/140 (38%), Positives = 84/140 (60%), Gaps = 1/140 (0%)
Frame = +3
Query: 3 SLCGFKRTITTLDNRILVVETKPGEVIKNLEYRAIDNEGMPKYKSPFEQGRLIIQFDVVF 182
+LCGF+ +T LD R L++++ GEV+K +++AI++EGMP Y+ PF +G++ I F V F
Sbjct: 283 ALCGFRFVLTHLDGRQLLIKSNLGEVVKPDQFKAIEDEGMPIYQRPFMKGKMYIHFTVEF 342
Query: 183 PENNFLPTDKLNKLRSILPPS-QFSSSLDNMKEAEECVLHPYDPSMANSKSQDRYHERHH 359
P++ L D++ L +ILPP S + + E EE LH + ++ + + +
Sbjct: 343 PDS--LNPDQVKSLEAILPPKPSMSLTYMELDECEETTLH--NVNIEEEMKRKQTQAQQE 398
Query: 360 VYDSDDEGGMPGGAQRVQCA 419
YD DDE P G QRVQCA
Sbjct: 399 AYDEDDE---PAGGQRVQCA 415
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,100,453
Number of Sequences: 369166
Number of extensions: 1102012
Number of successful extensions: 3136
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3121
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3551563800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)