Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_M01
(562 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q99735|MGST2_HUMAN Microsomal glutathione S-transferase ... 30 4.1
sp|P75566|Y103_MYCPN Hypothetical protein MPN103 (C09_orf172) 30 4.1
>sp|Q99735|MGST2_HUMAN Microsomal glutathione S-transferase 2 (Microsomal GST-2)
(Microsomal GST-II)
Length = 147
Score = 30.0 bits (66), Expect = 4.1
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = +3
Query: 105 FGRVFGIEIRSMDNCFDWFMVYEFKFWIDVFYFEIIFIYCYNNIWAF 245
F RVF R+ NC +++ ++ W+ +YF +F C ++ +
Sbjct: 46 FERVF----RAQQNCVEFYPIFIITLWMAGWYFNQVFATCLGLVYIY 88
>sp|P75566|Y103_MYCPN Hypothetical protein MPN103 (C09_orf172)
Length = 172
Score = 30.0 bits (66), Expect = 4.1
Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 3/68 (4%)
Frame = +3
Query: 180 FWIDVFYFEIIFIYCYN---NIWAFRWNWSWNCLRGCFGCSSKEIFEK*RINIWNRGCWI 350
FW F+ I+C N W FR WS LR F F R W
Sbjct: 36 FWTAWFFGAFRNIWCIRIIGNRWLFRSFWSTGTLRSIFNTRILWFFRSLRFLFNYFNWWF 95
Query: 351 FFVYNIFK 374
+F+ ++ K
Sbjct: 96 WFILDLLK 103
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,100,111
Number of Sequences: 369166
Number of extensions: 992296
Number of successful extensions: 3112
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3107
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4029688280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)