Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_L22
(400 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q7TUI1|ARLY_PROMP Argininosuccinate lyase (Arginosuccina... 30 2.3
sp|Q04567|YOR3_PRRSL Hypothetical 30.6 kDa protein (ORF3) 29 3.0
sp|Q8DRI4|ARLY_STRR6 Argininosuccinate lyase (Arginosuccina... 29 3.0
sp|Q5KW95|ARLY_GEOKA Argininosuccinate lyase (Arginosuccina... 29 3.0
sp|Q8ELT9|ARLY_OCEIH Argininosuccinate lyase (Arginosuccina... 29 3.9
sp|P19751|R1AB_CVMJH Replicase polyprotein 1ab (pp1ab) (ORF... 29 3.9
sp|Q9PYA3|R1AB_CVM2 Replicase polyprotein 1ab (pp1ab) (ORF1... 29 3.9
sp|Q57048|Y020_HAEIN Hypothetical protein HI0020 28 5.0
sp|P16342|R1AB_CVMA5 Replicase polyprotein 1ab (pp1ab) (ORF... 28 5.0
sp|Q7VEK0|ARLY_PROMA Argininosuccinate lyase (Arginosuccina... 28 6.6
>sp|Q7TUI1|ARLY_PROMP Argininosuccinate lyase (Arginosuccinase) (ASAL)
Length = 459
Score = 29.6 bits (65), Expect = 2.3
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = -3
Query: 278 RQKNPDLTVISKGKTGFLYDHIEQV 204
++KNPD+ + +GKTG +Y H++ +
Sbjct: 282 QKKNPDVPELIRGKTGRVYGHLQSL 306
>sp|Q04567|YOR3_PRRSL Hypothetical 30.6 kDa protein (ORF3)
Length = 265
Score = 29.3 bits (64), Expect = 3.0
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +2
Query: 35 CCTFHFQLKNFLQILVIIAWLMASVRRICHWFTVNH 142
C FHF L F+ LV A S +C WF + H
Sbjct: 5 CARFHFFLCGFICYLVHSALASNSSSTLCFWFPLAH 40
>sp|Q8DRI4|ARLY_STRR6 Argininosuccinate lyase (Arginosuccinase) (ASAL)
Length = 463
Score = 29.3 bits (64), Expect = 3.0
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = -3
Query: 278 RQKNPDLTVISKGKTGFLYDHI 213
++KNPD+ + +GKTG +Y H+
Sbjct: 285 QKKNPDMAELIRGKTGRVYGHL 306
>sp|Q5KW95|ARLY_GEOKA Argininosuccinate lyase (Arginosuccinase) (ASAL)
Length = 459
Score = 29.3 bits (64), Expect = 3.0
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = -3
Query: 278 RQKNPDLTVISKGKTGFLYDHI 213
++KNPD+ + +GKTG +Y H+
Sbjct: 282 QKKNPDMAELIRGKTGRVYGHL 303
>sp|Q8ELT9|ARLY_OCEIH Argininosuccinate lyase (Arginosuccinase) (ASAL)
Length = 459
Score = 28.9 bits (63), Expect = 3.9
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = -3
Query: 278 RQKNPDLTVISKGKTGFLYDHI 213
++KNPD+ + +GKTG +Y H+
Sbjct: 281 QKKNPDVAELVRGKTGRVYGHL 302
>sp|P19751|R1AB_CVMJH Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein) [Includes:
Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28;
p65; p210 (Papain-like proteinases 1/2)
(PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase
(3CL-PRO) (3CLp) (M-PRO) (p27); Unknown protein 1; p10;
p22; p12; Growth factor-like peptide (GFL) (p15);
RNA-directed RNA polymerase (RdRp) (Pol) (p100); Helicase
(Hel) (p67); Unknown protein 2; p35; Unknown protein 3]
Length = 7180
Score = 28.9 bits (63), Expect = 3.9
Identities = 9/30 (30%), Positives = 20/30 (66%)
Frame = +2
Query: 56 LKNFLQILVIIAWLMASVRRICHWFTVNHS 145
++++ Q + ++AWL A++ C+WF + S
Sbjct: 3531 VQDYTQTVNVVAWLYAAILNRCNWFVQSDS 3560
>sp|Q9PYA3|R1AB_CVM2 Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein) [Includes:
Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28;
p65; p210 (Papain-like proteinases 1/2)
(PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase
(3CL-PRO) (3CLp) (M-PRO) (p27); Unknown protein 1; p10;
p22; p12; Growth factor-like peptide (GFL) (p15);
RNA-directed RNA polymerase (RdRp) (Pol) (p100); Helicase
(Hel) (p67); Unknown protein 2; p35; Unknown protein 3]
Length = 7124
Score = 28.9 bits (63), Expect = 3.9
Identities = 9/30 (30%), Positives = 20/30 (66%)
Frame = +2
Query: 56 LKNFLQILVIIAWLMASVRRICHWFTVNHS 145
++++ Q + ++AWL A++ C+WF + S
Sbjct: 3474 VQDYTQTVNVVAWLYAAILNRCNWFVQSDS 3503
>sp|Q57048|Y020_HAEIN Hypothetical protein HI0020
Length = 479
Score = 28.5 bits (62), Expect = 5.0
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +1
Query: 148 IYMCAVRTAYQCLRACHKDTCSIWSYKNPVLPFDMTVRSGFFCRCIPWLTCVFI 309
+YM T+Y L A + ++ S P+L F+ T F +P L C+F+
Sbjct: 185 VYMVVKTTSYIFLTAMAPNALAL-SLMAPILGFETTWIKWFLAASVPGLLCLFL 237
>sp|P16342|R1AB_CVMA5 Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein) [Includes:
Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28;
p65; p210 (Papain-like proteinases 1/2)
(PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase
(3CL-PRO) (3CLp) (M-PRO) (p27); Unknown protein 1; p10;
p22; p12; Growth factor-like peptide (GFL) (p15);
RNA-directed RNA polymerase (RdRp) (Pol) (p100); Helicase
(Hel) (p67); Unknown protein 2; p35; Unknown protein 3]
Length = 7176
Score = 28.5 bits (62), Expect = 5.0
Identities = 9/30 (30%), Positives = 20/30 (66%)
Frame = +2
Query: 56 LKNFLQILVIIAWLMASVRRICHWFTVNHS 145
++++ Q + ++AWL A++ C+WF + S
Sbjct: 3528 VQDYTQTVNVVAWLYAAIFNRCNWFVQSDS 3557
>sp|Q7VEK0|ARLY_PROMA Argininosuccinate lyase (Arginosuccinase) (ASAL)
Length = 462
Score = 28.1 bits (61), Expect = 6.6
Identities = 9/25 (36%), Positives = 19/25 (76%)
Frame = -3
Query: 278 RQKNPDLTVISKGKTGFLYDHIEQV 204
++KNPD+ + +GKTG ++ H++ +
Sbjct: 282 QKKNPDVPELVRGKTGRVFGHLQSL 306
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,831,150
Number of Sequences: 369166
Number of extensions: 950079
Number of successful extensions: 2193
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2193
length of database: 68,354,980
effective HSP length: 98
effective length of database: 50,250,950
effective search space used: 1708532300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)