Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_L15
(726 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9D0M3|CY1_MOUSE Cytochrome c1, heme protein, mitochondr... 219 4e-57
sp|P00125|CY1_BOVIN Cytochrome c1, heme protein, mitochondr... 218 1e-56
sp|P08574|CY1_HUMAN Cytochrome c1, heme protein, mitochondr... 218 1e-56
sp|P07142|CY1_NEUCR Cytochrome c1, heme protein, mitochondr... 197 3e-50
sp|P25076|CY11_SOLTU Cytochrome c1, heme protein, mitochond... 195 9e-50
sp|P29610|CY12_SOLTU Cytochrome c1, heme protein, mitochond... 194 3e-49
sp|P07143|CY1_YEAST Cytochrome c1, heme protein, mitochondr... 191 2e-48
sp|Q00988|CY1_KLULA Cytochrome c1, heme protein, mitochondr... 188 1e-47
sp|P51131|CYBC_BRAJA Cytochrome b/c1 [Contains: Cytochrome ... 153 4e-37
sp|P20114|CY1_EUGGR Cytochrome c1, heme protein 149 7e-36
>sp|Q9D0M3|CY1_MOUSE Cytochrome c1, heme protein, mitochondrial precursor (Cytochrome
c-1)
Length = 325
Score = 219 bits (559), Expect = 4e-57
Identities = 101/178 (56%), Positives = 129/178 (72%)
Frame = +3
Query: 3 EAKQEAAEINVLDGPNDEGLMYDRPGRLGDYFPKPYANDELARKANNGALPPDLSLIVKA 182
EAK A E+ V DGPND+G M+ RPG+L DYFPKPY N E AR ANNGALPPDLS IV+A
Sbjct: 144 EAKALAEEVEVQDGPNDDGEMFMRPGKLSDYFPKPYPNPEAARAANNGALPPDLSYIVRA 203
Query: 183 REGGEDYIFQILTGYCDPPAGRNLDEGQYYNPYFPGGGISMAQALYDEIIEYPDGTPATT 362
R GGEDY+F +LTGYC+PP G +L EG Y+NPYFPG I MA +Y E++EY DGTPAT
Sbjct: 204 RHGGEDYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQAIGMAPPIYTEVLEYDDGTPATM 263
Query: 363 SQLAKDVVTFLTWTGDPHLEKRKKFAPRFYLTIGFLIAIVFYIRNMKFAHLKNIKCAF 536
SQ+AKDV TFL W +P + RK+ + L +G L+ + + ++ K++ LK+ K A+
Sbjct: 264 SQVAKDVATFLRWASEPEHDHRKRMGLKMLLMMGLLLPLTYAMKRHKWSVLKSRKLAY 321
>sp|P00125|CY1_BOVIN Cytochrome c1, heme protein, mitochondrial (Cytochrome c-1)
Length = 241
Score = 218 bits (556), Expect = 1e-56
Identities = 100/178 (56%), Positives = 131/178 (73%)
Frame = +3
Query: 3 EAKQEAAEINVLDGPNDEGLMYDRPGRLGDYFPKPYANDELARKANNGALPPDLSLIVKA 182
EAK A E+ V DGPN++G M+ RPG+L DYFPKPY N E AR ANNGALPPDLS IV+A
Sbjct: 60 EAKALAEEVEVQDGPNEDGEMFMRPGKLSDYFPKPYPNPEAARAANNGALPPDLSYIVRA 119
Query: 183 REGGEDYIFQILTGYCDPPAGRNLDEGQYYNPYFPGGGISMAQALYDEIIEYPDGTPATT 362
R GGEDY+F +LTGYC+PP G +L EG Y+NPYFPG I MA +Y+E++E+ DGTPAT
Sbjct: 120 RHGGEDYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQAIGMAPPIYNEVLEFDDGTPATM 179
Query: 363 SQLAKDVVTFLTWTGDPHLEKRKKFAPRFYLTIGFLIAIVFYIRNMKFAHLKNIKCAF 536
SQ+AKDV TFL W +P + RK+ + L +G L+ +V+ ++ K++ LK+ K A+
Sbjct: 180 SQVAKDVCTFLRWAAEPEHDHRKRMGLKMLLMMGLLLPLVYAMKRHKWSVLKSRKLAY 237
>sp|P08574|CY1_HUMAN Cytochrome c1, heme protein, mitochondrial precursor (Cytochrome
c-1)
Length = 325
Score = 218 bits (555), Expect = 1e-56
Identities = 99/178 (55%), Positives = 132/178 (74%)
Frame = +3
Query: 3 EAKQEAAEINVLDGPNDEGLMYDRPGRLGDYFPKPYANDELARKANNGALPPDLSLIVKA 182
EAK+ AAE+ V DGPN++G M+ RPG+L DYFPKPY N E AR ANNGALPPDLS IV+A
Sbjct: 144 EAKELAAEVEVQDGPNEDGEMFMRPGKLFDYFPKPYPNSEAARAANNGALPPDLSYIVRA 203
Query: 183 REGGEDYIFQILTGYCDPPAGRNLDEGQYYNPYFPGGGISMAQALYDEIIEYPDGTPATT 362
R GGEDY+F +LTGYC+PP G +L EG Y+NPYFPG I+MA +Y +++E+ DGTPAT
Sbjct: 204 RHGGEDYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQAIAMAPPIYTDVLEFDDGTPATM 263
Query: 363 SQLAKDVVTFLTWTGDPHLEKRKKFAPRFYLTIGFLIAIVFYIRNMKFAHLKNIKCAF 536
SQ+AKDV TFL W +P + RK+ + + + L+ +V+ I+ K++ LK+ K A+
Sbjct: 264 SQIAKDVCTFLRWASEPEHDHRKRMGLKMLMMMALLVPLVYTIKRHKWSVLKSRKLAY 321
>sp|P07142|CY1_NEUCR Cytochrome c1, heme protein, mitochondrial precursor
Length = 332
Score = 197 bits (500), Expect = 3e-50
Identities = 97/179 (54%), Positives = 123/179 (68%), Gaps = 1/179 (0%)
Frame = +3
Query: 3 EAKQEAAEINVLDGPNDEGLMYDRPGRLGDYFPKPYANDELARKANNGALPPDLSLIVKA 182
EAK A E PND+G + RPG+L DY P PY NDE AR ANNGALPPDLSLIVKA
Sbjct: 133 EAKALAEENEYDTEPNDQGEIEKRPGKLSDYLPDPYKNDEAARFANNGALPPDLSLIVKA 192
Query: 183 REGGEDYIFQILTGYCD-PPAGRNLDEGQYYNPYFPGGGISMAQALYDEIIEYPDGTPAT 359
R GG DYIF +LTGY D PPAG ++ G +NPYFPG GI+MA+ LYD +++Y DGTPA+
Sbjct: 193 RHGGCDYIFSLLTGYPDEPPAGASVGAGLNFNPYFPGTGIAMARVLYDGLVDYEDGTPAS 252
Query: 360 TSQLAKDVVTFLTWTGDPHLEKRKKFAPRFYLTIGFLIAIVFYIRNMKFAHLKNIKCAF 536
TSQ+AKDVV FL W +P ++ RK+ + + L A+ Y++ K+A LK+ K +
Sbjct: 253 TSQMAKDVVEFLNWAAEPEMDDRKRMGMKVLVVTSVLFALSVYVKRYKWAWLKSRKIVY 311
>sp|P25076|CY11_SOLTU Cytochrome c1, heme protein, mitochondrial precursor (Clone
PC13III)
Length = 320
Score = 195 bits (496), Expect = 9e-50
Identities = 91/175 (52%), Positives = 122/175 (69%)
Frame = +3
Query: 3 EAKQEAAEINVLDGPNDEGLMYDRPGRLGDYFPKPYANDELARKANNGALPPDLSLIVKA 182
E K AAEI V+DGPNDEG M+ RPG+L D FP+PYAN+ AR AN GA PPDLSLI KA
Sbjct: 139 ETKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYANEAAARFANGGAYPPDLSLITKA 198
Query: 183 REGGEDYIFQILTGYCDPPAGRNLDEGQYYNPYFPGGGISMAQALYDEIIEYPDGTPATT 362
R G++Y+F +LT Y DPPAG ++ EG +YNPYFPGG I+M + L D +EY DG PAT
Sbjct: 199 RHNGQNYVFALLTAYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGIPATE 258
Query: 363 SQLAKDVVTFLTWTGDPHLEKRKKFAPRFYLTIGFLIAIVFYIRNMKFAHLKNIK 527
+Q+ KDVV+FL+W +P +E+RK ++ + + Y R ++++ LK+ K
Sbjct: 259 AQMGKDVVSFLSWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLRWSVLKSRK 313
>sp|P29610|CY12_SOLTU Cytochrome c1, heme protein, mitochondrial precursor (Clone PC18I)
Length = 260
Score = 194 bits (492), Expect = 3e-49
Identities = 91/175 (52%), Positives = 120/175 (68%)
Frame = +3
Query: 3 EAKQEAAEINVLDGPNDEGLMYDRPGRLGDYFPKPYANDELARKANNGALPPDLSLIVKA 182
E K AAEI V DGPNDEG M+ RPG+L D FP+PY N+ AR AN GA PPDLSLI KA
Sbjct: 79 EVKAMAAEIEVEDGPNDEGEMFTRPGKLSDRFPQPYPNEAAARFANGGAYPPDLSLITKA 138
Query: 183 REGGEDYIFQILTGYCDPPAGRNLDEGQYYNPYFPGGGISMAQALYDEIIEYPDGTPATT 362
R G++Y+F +LT Y DPPAG ++ EG +YNPYFPGG I+M + L D +EY DG PAT
Sbjct: 139 RHNGQNYVFALLTAYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGVPATE 198
Query: 363 SQLAKDVVTFLTWTGDPHLEKRKKFAPRFYLTIGFLIAIVFYIRNMKFAHLKNIK 527
+Q+ KDVV+FLTW +P +E+RK ++ + + Y R ++++ LK+ K
Sbjct: 199 AQMGKDVVSFLTWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLRWSVLKSRK 253
>sp|P07143|CY1_YEAST Cytochrome c1, heme protein, mitochondrial precursor
Length = 309
Score = 191 bits (485), Expect = 2e-48
Identities = 93/186 (50%), Positives = 123/186 (66%), Gaps = 1/186 (0%)
Frame = +3
Query: 3 EAKQEAAEINVLDGPNDEGLMYDRPGRLGDYFPKPYANDELARKANNGALPPDLSLIVKA 182
E + A E D P+++G RPG+L DY P PY N++ AR AN GALPPDLSLIVKA
Sbjct: 124 EVRNMAEEFEYDDEPDEQGNPKKRPGKLSDYIPGPYPNEQAARAANQGALPPDLSLIVKA 183
Query: 183 REGGEDYIFQILTGYCD-PPAGRNLDEGQYYNPYFPGGGISMAQALYDEIIEYPDGTPAT 359
R GG DYIF +LTGY D PPAG L G YNPYFPGG I+MA+ L+D+++EY DGTPAT
Sbjct: 184 RHGGCDYIFSLLTGYPDEPPAGVALPPGSNYNPYFPGGSIAMARVLFDDMVEYEDGTPAT 243
Query: 360 TSQLAKDVVTFLTWTGDPHLEKRKKFAPRFYLTIGFLIAIVFYIRNMKFAHLKNIKCAFT 539
TSQ+AKDV TFL W +P ++RK+ + + + L + +++ K+A +K K F
Sbjct: 244 TSQMAKDVTTFLNWCAEPEHDERKRLGLKTVIILSSLYLLSIWVKKFKWAGIKTRKFVFN 303
Query: 540 SKRYKK 557
+ +K
Sbjct: 304 PPKPRK 309
>sp|Q00988|CY1_KLULA Cytochrome c1, heme protein, mitochondrial precursor
Length = 292
Score = 188 bits (477), Expect = 1e-47
Identities = 91/179 (50%), Positives = 120/179 (67%), Gaps = 1/179 (0%)
Frame = +3
Query: 3 EAKQEAAEINVLDGPNDEGLMYDRPGRLGDYFPKPYANDELARKANNGALPPDLSLIVKA 182
E + A E D P+D+G RPG+L DY P PY N++ AR AN GALPPDLSLIVKA
Sbjct: 109 EVRAMAEEFEYDDEPDDQGNPKKRPGKLADYVPGPYPNEQAARAANQGALPPDLSLIVKA 168
Query: 183 REGGEDYIFQILTGYCD-PPAGRNLDEGQYYNPYFPGGGISMAQALYDEIIEYPDGTPAT 359
R GG DYIF +LTGY + PPAG L G YNPYFPGG I+M + L+D+++EY DGTPAT
Sbjct: 169 RHGGPDYIFALLTGYPEEPPAGVVLPPGANYNPYFPGGSIAMGRVLFDDLVEYEDGTPAT 228
Query: 360 TSQLAKDVVTFLTWTGDPHLEKRKKFAPRFYLTIGFLIAIVFYIRNMKFAHLKNIKCAF 536
TSQ+AKDV TFL W +P ++RK+ + + + L + +++ K+A +K+ K F
Sbjct: 229 TSQMAKDVTTFLHWCSEPEHDERKRLGLKAMIVLSSLYLLSVWVKKFKWASIKSRKIVF 287
>sp|P51131|CYBC_BRAJA Cytochrome b/c1 [Contains: Cytochrome b; Cytochrome c1]
Length = 687
Score = 153 bits (387), Expect = 4e-37
Identities = 76/183 (41%), Positives = 107/183 (58%), Gaps = 19/183 (10%)
Frame = +3
Query: 18 AAEINVLDGPNDEGLMYDRPGRLGDYFPKPYANDELARKANNGALPPDLSLIVKAR---- 185
A++ + DGPND G M++RPGR DYFP P+ N++ AR AN GA PPDLSLI KAR
Sbjct: 502 ASDYKIKDGPNDAGDMFERPGRPADYFPSPFPNEQAARAANGGAAPPDLSLITKARSYGR 561
Query: 186 --------------EGGEDYIFQILTGYCDP-PAGRNLDEGQYYNPYFPGGGISMAQALY 320
E G DY+ +L G+ + P G + EG YYN YFPG I M + L
Sbjct: 562 GFPWFIFDFFTQYQEQGPDYVSAVLQGFEEKVPEGVTIPEGSYYNKYFPGHAIKMPKPLS 621
Query: 321 DEIIEYPDGTPATTSQLAKDVVTFLTWTGDPHLEKRKKFAPRFYLTIGFLIAIVFYIRNM 500
D + Y DG+PAT +Q +KDV TFL WT +PH+E RK+ + ++ + ++++ +
Sbjct: 622 DGQVTYDDGSPATVAQYSKDVTTFLMWTAEPHMEARKRLGFQVFVFLIIFAGLMYFTKKK 681
Query: 501 KFA 509
+A
Sbjct: 682 VWA 684
>sp|P20114|CY1_EUGGR Cytochrome c1, heme protein
Length = 243
Score = 149 bits (376), Expect = 7e-36
Identities = 81/186 (43%), Positives = 105/186 (56%), Gaps = 1/186 (0%)
Frame = +3
Query: 3 EAKQEAAEINVLDGPNDEGLMYDRPGRLGDYFPKPYANDELARKANNGALPPDLSLIVKA 182
E K AA V D P+++G RPG+ D +PY N++ AR ANNGALPPDLS+I A
Sbjct: 58 EVKNMAASFEVDDDPDEKGEARKRPGKRFDTVVQPYKNEQEARYANNGALPPDLSVITNA 117
Query: 183 REGGEDYIFQILTGYCDP-PAGRNLDEGQYYNPYFPGGGISMAQALYDEIIEYPDGTPAT 359
R GG DYI+ +LTGY P P G L Q+YNPYF GG I M L D++IEY DGTPA+
Sbjct: 118 RHGGVDYIYALLTGYGRPVPGGVQLSTTQWYNPYFHGGIIGMPPPLTDDMIEYEDGTPAS 177
Query: 360 TSQLAKDVVTFLTWTGDPHLEKRKKFAPRFYLTIGFLIAIVFYIRNMKFAHLKNIKCAFT 539
Q+AKDV FL W +P ++RK + T+ + Y ++ + AF
Sbjct: 178 VPQMAKDVTCFLEWCSNPWWDERKLLGYKTIATLAVIAVSSGYYNRFLSGLWRSRRLAFR 237
Query: 540 SKRYKK 557
Y K
Sbjct: 238 PFNYSK 243
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,399,554
Number of Sequences: 369166
Number of extensions: 2029121
Number of successful extensions: 4183
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4172
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6510836890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)