Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_L09
(429 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9CZB0|C560_MOUSE Succinate dehydrogenase cytochrome b56... 98 6e-21
sp|Q99643|C560_HUMAN Succinate dehydrogenase cytochrome b56... 96 2e-20
sp|P70097|C560_CRIGR Succinate dehydrogenase cytochrome b56... 96 2e-20
sp|P35720|C560_BOVIN Succinate dehydrogenase cytochrome b56... 91 1e-18
sp|P41955|C560_CAEBR Succinate dehydrogenase cytochrome b56... 67 2e-11
sp|P41956|C560_CAEEL Succinate dehydrogenase cytochrome b56... 65 6e-11
sp|P41085|DHSC_RICPR Succinate dehydrogenase cytochrome b55... 54 2e-07
sp|Q92J99|DHSC_RICCN Succinate dehydrogenase cytochrome b55... 53 3e-07
sp|Q59659|DHSC_PARDE Succinate dehydrogenase cytochrome b55... 49 4e-06
sp|P80481|C560_RECAM Succinate dehydrogenase cytochrome b56... 48 8e-06
>sp|Q9CZB0|C560_MOUSE Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor (Integral membrane protein CII-3) (QPS1)
(QPs-1)
Length = 169
Score = 98.2 bits (243), Expect = 6e-21
Identities = 46/111 (41%), Positives = 67/111 (60%)
Frame = +1
Query: 1 PYSPHLLIYKMELPMTTSLLHRGSGIAMAIAWGGLGCGAFFYTGHYAEIIHYLSSLELGP 180
P SPHL IYK LPM S+ HRGSGIA++ G A G++ + ++ SL LGP
Sbjct: 51 PLSPHLTIYKWSLPMALSVCHRGSGIALSGGVSLFGLSALLLPGNFESYLMFVKSLCLGP 110
Query: 181 AIIFGAKLIMCWPLIFHYTNGMRHLAYDFAKGFDIPTTMRTGYIALALSVV 333
+I+ AK ++ +PL++H NG+RHL +D KG IP +G + L+V+
Sbjct: 111 TLIYSAKFVLVFPLMYHSLNGIRHLLWDLGKGLAIPQVWLSGVAVVVLAVL 161
>sp|Q99643|C560_HUMAN Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor (Integral membrane protein CII-3) (QPS1)
(QPs-1) (Succinate dehydrogenase complex subunit C)
(Succinate-ubiquinone oxidoreductase cytochrome B large
subunit) (CYBL)
Length = 169
Score = 96.3 bits (238), Expect = 2e-20
Identities = 45/111 (40%), Positives = 66/111 (59%)
Frame = +1
Query: 1 PYSPHLLIYKMELPMTTSLLHRGSGIAMAIAWGGLGCGAFFYTGHYAEIIHYLSSLELGP 180
P SPH+ IY LPM S+ HRG+GIA++ G A G++ + + SL LGP
Sbjct: 51 PLSPHITIYSWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGP 110
Query: 181 AIIFGAKLIMCWPLIFHYTNGMRHLAYDFAKGFDIPTTMRTGYIALALSVV 333
A+I AK + +PL++H NG+RHL +D KG IP ++G + L L+V+
Sbjct: 111 ALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVL 161
>sp|P70097|C560_CRIGR Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor (Integral membrane protein CII-3) (QPS1)
(QPs-1)
Length = 169
Score = 96.3 bits (238), Expect = 2e-20
Identities = 45/119 (37%), Positives = 71/119 (59%)
Frame = +1
Query: 1 PYSPHLLIYKMELPMTTSLLHRGSGIAMAIAWGGLGCGAFFYTGHYAEIIHYLSSLELGP 180
P SPHL IY+ LPM S+ HRG+G+A++ G A G++ + ++ SL LGP
Sbjct: 51 PVSPHLTIYRWSLPMVMSICHRGTGVALSGGVSLFGLSALLLPGNFESYLMFIKSLCLGP 110
Query: 181 AIIFGAKLIMCWPLIFHYTNGMRHLAYDFAKGFDIPTTMRTGYIALALSVVIATLFASI 357
A+I AK ++ +PL++H NG+RHL +D KG I ++G L L+V+ + A++
Sbjct: 111 ALIHSAKFVLVFPLMYHSLNGIRHLIWDLGKGLSISQVYQSGVAVLMLAVLSSVGLAAM 169
>sp|P35720|C560_BOVIN Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor (Integral membrane protein CII-3) (QPS1)
(QPs-1) (Succinate dehydrogenase complex subunit C)
Length = 169
Score = 90.5 bits (223), Expect = 1e-18
Identities = 45/119 (37%), Positives = 68/119 (57%)
Frame = +1
Query: 1 PYSPHLLIYKMELPMTTSLLHRGSGIAMAIAWGGLGCGAFFYTGHYAEIIHYLSSLELGP 180
P SPH+ IY LPM S+ HRG+GIA++ G A G + + ++ SL LGP
Sbjct: 51 PLSPHISIYGWSLPMAMSICHRGTGIALSAGVSLFGLSALLVPGSFESHLEFVKSLCLGP 110
Query: 181 AIIFGAKLIMCWPLIFHYTNGMRHLAYDFAKGFDIPTTMRTGYIALALSVVIATLFASI 357
A+I AK + +PL++H NG+RHL +D KG I ++G L L+V+ + A++
Sbjct: 111 ALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLTISQLHQSGVAVLVLTVLSSVGLAAM 169
>sp|P41955|C560_CAEBR Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor
Length = 184
Score = 66.6 bits (161), Expect = 2e-11
Identities = 42/116 (36%), Positives = 60/116 (51%), Gaps = 3/116 (2%)
Frame = +1
Query: 1 PYSPHLLIYKMELPMTTSLLHRGSGIAMA--IAWGGLGCGAFFYTGHYAEIIHYLSSLEL 174
P +PHL IY+ +L S HR SG MA + GGLG + + Y+ L
Sbjct: 53 PIAPHLTIYQPQLTWMLSGFHRISGCVMAGTLLVGGLGFAVLPLD--FTTFVEYIRGWNL 110
Query: 175 GPAIIFGAKLIMCWPLIFHYTNGMRHLAYDFAKGFD-IPTTMRTGYIALALSVVIA 339
A+ K I+ +P+IFH NG+R L +D AKG D I ++G++ +S VIA
Sbjct: 111 PCAVTAVFKYIIAFPIIFHTLNGIRFLGFDLAKGVDNIGQVYKSGWLVFGVSAVIA 166
>sp|P41956|C560_CAEEL Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor
Length = 182
Score = 65.1 bits (157), Expect = 6e-11
Identities = 38/116 (32%), Positives = 62/116 (53%), Gaps = 3/116 (2%)
Frame = +1
Query: 1 PYSPHLLIYKMELPMTTSLLHRGSGIAMA--IAWGGLGCGAFFYTGHYAEIIHYLSSLEL 174
P +PHL +Y+ +L S HR SG MA + GG+G + + + ++ S L
Sbjct: 53 PIAPHLTVYQPQLTWMLSGFHRISGCVMAGTLLVGGIGFAVLPFD--FTAFVDFIRSWNL 110
Query: 175 GPAIIFGAKLIMCWPLIFHYTNGMRHLAYDFAKGF-DIPTTMRTGYIALALSVVIA 339
A+ K I+ +P+IFH NG+R L +D AKG ++ ++GY+ LS ++A
Sbjct: 111 PCAVTAVFKYIIAFPIIFHTLNGIRFLGFDLAKGVNNVGQIYKSGYLVSGLSAILA 166
>sp|P41085|DHSC_RICPR Succinate dehydrogenase cytochrome b556 subunit (Cytochrome b-556)
Length = 124
Score = 53.5 bits (127), Expect = 2e-07
Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Frame = +1
Query: 1 PYSPHLLIYKMELPMTTSLLHRGSGIAMAIAWGGLGCGAFF--YTGHYAEIIHYLSSLEL 174
P SPHL IYK ++ T S+LHR +G+A+ L Y +Y L+L
Sbjct: 13 PTSPHLTIYKPQISSTLSILHRMTGVALFFVVSILVWWLILSKYDNNY---------LQL 63
Query: 175 GPAIIFGAKLI-MCWPLIFHYTNGMRHLAYDFAKGFDIPTTMRTGYIALALSVVIATL 345
I L+ + +H NG+RHL +D GF I TG+ + S+++ L
Sbjct: 64 ASCCIIKICLVAFSYSWCYHLCNGIRHLFWDIGYGFSIKAVNITGWCVVVCSILLTML 121
>sp|Q92J99|DHSC_RICCN Succinate dehydrogenase cytochrome b556 subunit (Cytochrome b-556)
Length = 124
Score = 52.8 bits (125), Expect = 3e-07
Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 3/118 (2%)
Frame = +1
Query: 1 PYSPHLLIYKMELPMTTSLLHRGSGIAMAIAWGGLGCGAFF--YTGHYAEIIHYLSSLEL 174
P SPHL IYK ++ T S+L+R +G+A+ A L Y +Y L+L
Sbjct: 13 PTSPHLTIYKPQISSTLSILYRMTGVALFFAVSILVWWLILSKYDNNY---------LQL 63
Query: 175 GPAIIFGAKLI-MCWPLIFHYTNGMRHLAYDFAKGFDIPTTMRTGYIALALSVVIATL 345
I L+ + + +H NG+RHL +D GF I TG+ + SV++ L
Sbjct: 64 AECCIIKICLVAVSYAWFYHLCNGIRHLFWDIGYGFSIKLVNITGWCVVVGSVLLTVL 121
>sp|Q59659|DHSC_PARDE Succinate dehydrogenase cytochrome b556 subunit (Cytochrome b-556)
Length = 130
Score = 48.9 bits (115), Expect = 4e-06
Identities = 38/120 (31%), Positives = 58/120 (48%), Gaps = 5/120 (4%)
Frame = +1
Query: 1 PYSPHLLIYKMELPMTTSLLHRGSGIAMA-----IAWGGLGCGAFFYTGHYAEIIHYLSS 165
P SPHL +Y++ L TS++ R +G A+ I W + A G +A ++
Sbjct: 10 PLSPHLQVYRLPLAAITSIMTRITGHALVAGIVLITWWLVA--AVTSPGAFA-CADWVVR 66
Query: 166 LELGPAIIFGAKLIMCWPLIFHYTNGMRHLAYDFAKGFDIPTTMRTGYIALALSVVIATL 345
LG I+ G+ W L +H G+RHL YD G +I ++ +A SVV+A L
Sbjct: 67 SWLGFIILTGSM----WALWYHLLAGLRHLFYDAGYGLEIEQAHKSSQALIAGSVVLAVL 122
>sp|P80481|C560_RECAM Succinate dehydrogenase cytochrome b560 subunit (Succinate
dehydrogenase, subunit III)
Length = 144
Score = 48.1 bits (113), Expect = 8e-06
Identities = 35/122 (28%), Positives = 55/122 (45%), Gaps = 3/122 (2%)
Frame = +1
Query: 1 PYSPHLLIYKMELPMTTSLLHR--GSGIAMAIAWGGLGCGAF-FYTGHYAEIIHYLSSLE 171
P SPHL IYK+++ T S+ HR G +A+ + + L F+ YA + +
Sbjct: 22 PISPHLTIYKLQITNTLSIFHRITGGVLALTLCFFILILKMLNFHLSSYAFYSIAYTLNQ 81
Query: 172 LGPAIIFGAKLIMCWPLIFHYTNGMRHLAYDFAKGFDIPTTMRTGYIALALSVVIATLFA 351
+ + + +H G+RHL +D +I TGYI L L+ + TL A
Sbjct: 82 YSGFLFIAISFFLLLFIFYHLFAGLRHLVWDAGYALEIENVYLTGYIMLGLAFLF-TLIA 140
Query: 352 SI 357
I
Sbjct: 141 WI 142
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,716,919
Number of Sequences: 369166
Number of extensions: 994318
Number of successful extensions: 2484
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2470
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2095022160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)