Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_L05-2
(324 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P17980|PRS6A_HUMAN 26S protease regulatory subunit 6A (T... 166 1e-41
sp|O88685|PRS6A_MOUSE 26S protease regulatory subunit 6A (T... 166 1e-41
sp|O42586|PR6AB_XENLA 26S protease regulatory subunit 6A-B ... 166 1e-41
sp|O42587|PR6AA_XENLA 26S protease regulatory subunit 6A-A ... 166 1e-41
sp|Q63569|PRS6A_RAT 26S protease regulatory subunit 6A (TAT... 166 1e-41
sp|P46465|PRS6A_ORYSA 26S protease regulatory subunit 6A ho... 153 1e-37
sp|P54776|PRS6A_LYCES 26S protease regulatory subunit 6A ho... 152 2e-37
sp|O23894|PRS6A_BRACM 26S protease regulatory subunit 6A ho... 152 2e-37
sp|O04019|PRS6A_ARATH 26S protease regulatory subunit 6A ho... 152 2e-37
sp|O14126|PRS6A_SCHPO 26S protease regulatory subunit 6A 130 7e-31
>sp|P17980|PRS6A_HUMAN 26S protease regulatory subunit 6A (TAT-binding protein 1) (TBP-1)
(Proteasome subunit P50)
Length = 439
Score = 166 bits (421), Expect = 1e-41
Identities = 82/108 (75%), Positives = 95/108 (87%)
Frame = +1
Query: 1 NEIRIMKSELTHVSHETKTQQDKIKENKSKIKLNKALPYLVSNVIELLDVEPQGDEEEDG 180
+EI+IMKSE+ V+HE + +DKIKEN KIK+NK LPYLVSNVIELLDV+P D+EEDG
Sbjct: 50 SEIKIMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPN-DQEEDG 108
Query: 181 GHIDLDSQRKGKCAVIKTSTRQTYFLPIIGLVEPNELKPGDLVGVNKD 324
+IDLDSQRKGKCAVIKTSTRQTYFLP+IGLV+ +LKPGDLVGVNKD
Sbjct: 109 ANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKD 156
>sp|O88685|PRS6A_MOUSE 26S protease regulatory subunit 6A (TAT-binding protein 1) (TBP-1)
Length = 442
Score = 166 bits (421), Expect = 1e-41
Identities = 82/108 (75%), Positives = 95/108 (87%)
Frame = +1
Query: 1 NEIRIMKSELTHVSHETKTQQDKIKENKSKIKLNKALPYLVSNVIELLDVEPQGDEEEDG 180
+EI+IMKSE+ V+HE + +DKIKEN KIK+NK LPYLVSNVIELLDV+P D+EEDG
Sbjct: 53 SEIKIMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPN-DQEEDG 111
Query: 181 GHIDLDSQRKGKCAVIKTSTRQTYFLPIIGLVEPNELKPGDLVGVNKD 324
+IDLDSQRKGKCAVIKTSTRQTYFLP+IGLV+ +LKPGDLVGVNKD
Sbjct: 112 ANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKD 159
>sp|O42586|PR6AB_XENLA 26S protease regulatory subunit 6A-B (TAT-binding protein 10)
(TBP-10)
Length = 404
Score = 166 bits (421), Expect = 1e-41
Identities = 82/108 (75%), Positives = 95/108 (87%)
Frame = +1
Query: 1 NEIRIMKSELTHVSHETKTQQDKIKENKSKIKLNKALPYLVSNVIELLDVEPQGDEEEDG 180
+EI+IMKSE+ V+HE + +DKIKEN KIK+NK LPYLVSNVIELLDV+P D+EEDG
Sbjct: 15 SEIKIMKSEVLRVTHELQAMRDKIKENSEKIKVNKTLPYLVSNVIELLDVDPN-DQEEDG 73
Query: 181 GHIDLDSQRKGKCAVIKTSTRQTYFLPIIGLVEPNELKPGDLVGVNKD 324
+IDLDSQRKGKCAVIKTSTRQTYFLP+IGLV+ +LKPGDLVGVNKD
Sbjct: 74 ANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKD 121
>sp|O42587|PR6AA_XENLA 26S protease regulatory subunit 6A-A (TAT-binding protein 6)
(TBP-6)
Length = 405
Score = 166 bits (421), Expect = 1e-41
Identities = 82/108 (75%), Positives = 95/108 (87%)
Frame = +1
Query: 1 NEIRIMKSELTHVSHETKTQQDKIKENKSKIKLNKALPYLVSNVIELLDVEPQGDEEEDG 180
+EI+IMKSE+ V+HE + +DKIKEN KIK+NK LPYLVSNVIELLDV+P D+EEDG
Sbjct: 34 SEIKIMKSEVLRVTHELQAMRDKIKENSEKIKVNKTLPYLVSNVIELLDVDPN-DQEEDG 92
Query: 181 GHIDLDSQRKGKCAVIKTSTRQTYFLPIIGLVEPNELKPGDLVGVNKD 324
+IDLDSQRKGKCAVIKTSTRQTYFLP+IGLV+ +LKPGDLVGVNKD
Sbjct: 93 ANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKD 140
>sp|Q63569|PRS6A_RAT 26S protease regulatory subunit 6A (TAT-binding protein 1) (TBP-1)
(Spermatogenic cell/sperm-associated TAT-binding protein
homolog SATA)
Length = 439
Score = 166 bits (421), Expect = 1e-41
Identities = 82/108 (75%), Positives = 95/108 (87%)
Frame = +1
Query: 1 NEIRIMKSELTHVSHETKTQQDKIKENKSKIKLNKALPYLVSNVIELLDVEPQGDEEEDG 180
+EI+IMKSE+ V+HE + +DKIKEN KIK+NK LPYLVSNVIELLDV+P D+EEDG
Sbjct: 50 SEIKIMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPN-DQEEDG 108
Query: 181 GHIDLDSQRKGKCAVIKTSTRQTYFLPIIGLVEPNELKPGDLVGVNKD 324
+IDLDSQRKGKCAVIKTSTRQTYFLP+IGLV+ +LKPGDLVGVNKD
Sbjct: 109 ANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKD 156
>sp|P46465|PRS6A_ORYSA 26S protease regulatory subunit 6A homolog (TAT-binding protein
homolog 1) (TBP-1)
Length = 429
Score = 153 bits (387), Expect = 1e-37
Identities = 70/108 (64%), Positives = 90/108 (83%)
Frame = +1
Query: 1 NEIRIMKSELTHVSHETKTQQDKIKENKSKIKLNKALPYLVSNVIELLDVEPQGDEEEDG 180
NE R++K EL + E ++ ++KIKEN+ KIKLNK LPYLV N++E+L++ P+ + EEDG
Sbjct: 39 NETRVLKDELQRTNLEVESYKEKIKENQEKIKLNKQLPYLVGNIVEILEMNPEDEAEEDG 98
Query: 181 GHIDLDSQRKGKCAVIKTSTRQTYFLPIIGLVEPNELKPGDLVGVNKD 324
+IDLDSQRKGKC V+KTSTRQT FLP+IGLV+P +LKPGDLVGVNKD
Sbjct: 99 ANIDLDSQRKGKCVVLKTSTRQTIFLPVIGLVDPEKLKPGDLVGVNKD 146
>sp|P54776|PRS6A_LYCES 26S protease regulatory subunit 6A homolog (TAT-binding protein
homolog 1) (TBP-1) (Mg(2+)-dependent ATPase 1) (LEMA-1)
Length = 423
Score = 152 bits (385), Expect = 2e-37
Identities = 71/108 (65%), Positives = 90/108 (83%)
Frame = +1
Query: 1 NEIRIMKSELTHVSHETKTQQDKIKENKSKIKLNKALPYLVSNVIELLDVEPQGDEEEDG 180
NEIRI+K EL + E + ++KIKEN+ KIKLNK LPYLV N++E+L++ P+ + EEDG
Sbjct: 33 NEIRIIKEELQRTNLELDSFKEKIKENQEKIKLNKQLPYLVGNIVEILEMNPEEEAEEDG 92
Query: 181 GHIDLDSQRKGKCAVIKTSTRQTYFLPIIGLVEPNELKPGDLVGVNKD 324
+IDLDSQRKGKC V+KTSTRQT FLP++GLV+P+ LKPGDLVGVNKD
Sbjct: 93 ANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDNLKPGDLVGVNKD 140
>sp|O23894|PRS6A_BRACM 26S protease regulatory subunit 6A homolog (TAT-binding protein
homolog 1) (TBP-1)
Length = 424
Score = 152 bits (385), Expect = 2e-37
Identities = 70/108 (64%), Positives = 89/108 (82%)
Frame = +1
Query: 1 NEIRIMKSELTHVSHETKTQQDKIKENKSKIKLNKALPYLVSNVIELLDVEPQGDEEEDG 180
NEIRI+K + + E + ++KIKEN+ KIKLNK LPYLV N++E+L++ P+ D EEDG
Sbjct: 34 NEIRILKEDAQRTNLECDSYKEKIKENQEKIKLNKQLPYLVGNIVEILEMNPEDDAEEDG 93
Query: 181 GHIDLDSQRKGKCAVIKTSTRQTYFLPIIGLVEPNELKPGDLVGVNKD 324
+IDLDSQRKGKC V+KTSTRQT FLP++GLV+P+ LKPGDLVGVNKD
Sbjct: 94 ANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDSLKPGDLVGVNKD 141
>sp|O04019|PRS6A_ARATH 26S protease regulatory subunit 6A homolog (TAT-binding protein
homolog 1) (TBP-1)
Length = 419
Score = 152 bits (384), Expect = 2e-37
Identities = 70/108 (64%), Positives = 90/108 (83%)
Frame = +1
Query: 1 NEIRIMKSELTHVSHETKTQQDKIKENKSKIKLNKALPYLVSNVIELLDVEPQGDEEEDG 180
NEIRI+K E + + ++ ++KIKEN+ KIKLNK LPYLV N++E+L++ P+ D EEDG
Sbjct: 29 NEIRILKEESQRTNLDLESVKEKIKENQEKIKLNKQLPYLVGNIVEILEMSPEDDAEEDG 88
Query: 181 GHIDLDSQRKGKCAVIKTSTRQTYFLPIIGLVEPNELKPGDLVGVNKD 324
+IDLDSQRKGKC V+KTSTRQT FLP++GLV+P+ LKPGDLVGVNKD
Sbjct: 89 ANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDTLKPGDLVGVNKD 136
>sp|O14126|PRS6A_SCHPO 26S protease regulatory subunit 6A
Length = 438
Score = 130 bits (328), Expect = 7e-31
Identities = 62/108 (57%), Positives = 82/108 (75%)
Frame = +1
Query: 1 NEIRIMKSELTHVSHETKTQQDKIKENKSKIKLNKALPYLVSNVIELLDVEPQGDEEEDG 180
N+I++MKSE ++HE T +KIKEN+ KI NK LPYLV NV+E+LD++P + ++
Sbjct: 48 NDIKVMKSEFQRLTHEKSTMLEKIKENQEKISNNKMLPYLVGNVVEILDMQPDEVDVQES 107
Query: 181 GHIDLDSQRKGKCAVIKTSTRQTYFLPIIGLVEPNELKPGDLVGVNKD 324
+ + ++ R GK AVIKTSTRQT FLP+IGLVEP EL PGDL+GVNKD
Sbjct: 108 ANQNSEATRVGKSAVIKTSTRQTIFLPLIGLVEPEELHPGDLIGVNKD 155
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.310 0.133 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,885,805
Number of Sequences: 369166
Number of extensions: 429188
Number of successful extensions: 1088
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1079
length of database: 68,354,980
effective HSP length: 76
effective length of database: 54,315,120
effective search space used: 1683768720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)