Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_L02
(244 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O02485|YDJ1_CAEEL Hypothetical protein ZK1073.1 in chrom... 56 3e-08
sp|Q9UGV2|NDRG3_HUMAN NDRG3 protein 45 4e-05
sp|Q8BTG7|NDRG4_MOUSE NDRG4 protein 45 5e-05
sp|Q9QYF9|NDRG3_MOUSE NDRG3 protein (Ndr3 protein) 45 5e-05
sp|Q9ULP0|NDRG4_HUMAN NDRG4 protein (Brain development-rela... 45 5e-05
sp|Q62433|NDRG1_MOUSE NDRG1 protein (N-myc downstream regul... 44 9e-05
sp|Q92597|NDRG1_HUMAN NDRG1 protein (N-myc downstream regul... 44 2e-04
sp|Q9Z2L9|NDRG4_RAT NDRG4 protein (Brain development-relate... 42 4e-04
sp|Q9UN36|NDRG2_HUMAN NDRG2 protein (Syld709613 protein) 41 8e-04
sp|Q9QYG0|NDRG2_MOUSE NDRG2 protein (Ndr2 protein) 40 0.002
>sp|O02485|YDJ1_CAEEL Hypothetical protein ZK1073.1 in chromosome X
Length = 325
Score = 55.8 bits (133), Expect = 3e-08
Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Frame = +3
Query: 18 CKTLTFYIEGTRSTN--EVAILTVHDIGCNHTQYVDFIKHSCMETLAPRCVWFNVDLPGQ 191
C L Y++G + ILTVHDIG NH +V F+ H M T+ + ++ +V +PGQ
Sbjct: 16 CGVLHVYVQGNLEERGGKTIILTVHDIGTNHKSFVRFVNHPSMATVKEKAIFLHVCVPGQ 75
Query: 192 GINDPDLPSDFTYPTM 239
N D DF PT+
Sbjct: 76 EDNSADFFGDF--PTL 89
>sp|Q9UGV2|NDRG3_HUMAN NDRG3 protein
Length = 375
Score = 45.4 bits (106), Expect = 4e-05
Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +3
Query: 39 IEGTRSTNEVAILTVHDIGCNHTQYVD-FIKHSCMETLAPRCVWFNVDLPGQGINDPDLP 215
I G N ILT HDIG NH + F M+ + +VD PGQ P P
Sbjct: 46 IRGLPKGNRPVILTYHDIGLNHKSCFNAFFNFEDMQEITQHFAVCHVDAPGQQEGAPSFP 105
Query: 216 SDFTYPTM 239
+ + YPTM
Sbjct: 106 TGYQYPTM 113
>sp|Q8BTG7|NDRG4_MOUSE NDRG4 protein
Length = 352
Score = 45.1 bits (105), Expect = 5e-05
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +3
Query: 39 IEGTRSTNEVAILTVHDIGCNHTQ-YVDFIKHSCMETLAPRCVWFNVDLPGQGINDPDLP 215
I G+ N AILT HD+G NH + F M+ + V +VD PGQ + P
Sbjct: 22 IRGSPKGNRPAILTYHDVGLNHKLCFNTFFNFEDMQEITKHFVVCHVDAPGQQVGASQFP 81
Query: 216 SDFTYPTMQ 242
+ +P+M+
Sbjct: 82 QGYQFPSME 90
>sp|Q9QYF9|NDRG3_MOUSE NDRG3 protein (Ndr3 protein)
Length = 375
Score = 45.1 bits (105), Expect = 5e-05
Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +3
Query: 39 IEGTRSTNEVAILTVHDIGCNHTQ-YVDFIKHSCMETLAPRCVWFNVDLPGQGINDPDLP 215
I G N ILT HDIG NH + F M+ + +VD PGQ P P
Sbjct: 46 IRGLPKGNRPVILTYHDIGLNHKSCFNTFFNFEDMQEITQHFAVCHVDAPGQQEAAPSFP 105
Query: 216 SDFTYPTM 239
+ + YPTM
Sbjct: 106 TGYQYPTM 113
>sp|Q9ULP0|NDRG4_HUMAN NDRG4 protein (Brain development-related molecule 1) (Vascular
smooth muscle cell associated protein 8) (SMAP-8)
Length = 352
Score = 45.1 bits (105), Expect = 5e-05
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +3
Query: 39 IEGTRSTNEVAILTVHDIGCNHTQ-YVDFIKHSCMETLAPRCVWFNVDLPGQGINDPDLP 215
I G+ N AILT HD+G NH + F M+ + V +VD PGQ + P
Sbjct: 22 IRGSPKGNRPAILTYHDVGLNHKLCFNTFFNFEDMQEITKHFVVCHVDAPGQQVGASQFP 81
Query: 216 SDFTYPTMQ 242
+ +P+M+
Sbjct: 82 QGYQFPSME 90
>sp|Q62433|NDRG1_MOUSE NDRG1 protein (N-myc downstream regulated gene 1 protein) (Protein
Ndr1)
Length = 394
Score = 44.3 bits (103), Expect = 9e-05
Identities = 25/66 (37%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +3
Query: 45 GTRSTNEVAILTVHDIGCNH-TQYVDFIKHSCMETLAPRCVWFNVDLPGQGINDPDLPSD 221
GT N ILT HDIG NH T Y M+ + +VD PGQ P P
Sbjct: 50 GTPKGNRPVILTYHDIGMNHKTCYNPLFNSEDMQEITQHFAVCHVDAPGQQDGAPSFPVG 109
Query: 222 FTYPTM 239
+ YP+M
Sbjct: 110 YMYPSM 115
>sp|Q92597|NDRG1_HUMAN NDRG1 protein (N-myc downstream regulated gene 1 protein)
(Differentiation-related gene 1 protein) (DRG1)
(Reducing agents and tunicamycin-responsive protein)
(RTP) (Nickel-specific induction protein Cap43) (Rit42)
Length = 394
Score = 43.5 bits (101), Expect = 2e-04
Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +3
Query: 45 GTRSTNEVAILTVHDIGCNH-TQYVDFIKHSCMETLAPRCVWFNVDLPGQGINDPDLPSD 221
GT N ILT HDIG NH T Y + M+ + +VD PGQ P+
Sbjct: 50 GTPKGNRPVILTYHDIGMNHKTCYNPLFNYEDMQEITQHFAVCHVDAPGQQDGAASFPAG 109
Query: 222 FTYPTM 239
+ YP+M
Sbjct: 110 YMYPSM 115
>sp|Q9Z2L9|NDRG4_RAT NDRG4 protein (Brain development-related molecule 1)
Length = 352
Score = 42.0 bits (97), Expect = 4e-04
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +3
Query: 39 IEGTRSTNEVAILTVHDIGCNHTQ-YVDFIKHSCMETLAPRCVWFNVDLPGQGINDPDLP 215
I G+ N AILT HD+G NH + M+ + V +VD PGQ + P
Sbjct: 22 IRGSPKGNRPAILTYHDVGLNHKLCFNTLFNLEDMQEITKHFVVCHVDAPGQQVGASQFP 81
Query: 216 SDFTYPTMQ 242
+ +P+M+
Sbjct: 82 QGYQFPSME 90
>sp|Q9UN36|NDRG2_HUMAN NDRG2 protein (Syld709613 protein)
Length = 371
Score = 41.2 bits (95), Expect = 8e-04
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +3
Query: 24 TLTFYIEGTRSTNEVAILTVHDIGCNHTQ-YVDFIKHSCMETLAPRCVWFNVDLPGQGIN 200
++TF + GT AILT HD+G N+ + + M+ + V +VD PG
Sbjct: 49 SVTFTVYGTPKPKRPAILTYHDVGLNYKSCFQPLFQFEDMQEIIQNFVRVHVDAPGMEEG 108
Query: 201 DPDLPSDFTYPTM 239
P P + YP++
Sbjct: 109 APVFPLGYQYPSL 121
>sp|Q9QYG0|NDRG2_MOUSE NDRG2 protein (Ndr2 protein)
Length = 371
Score = 40.0 bits (92), Expect = 0.002
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +3
Query: 24 TLTFYIEGTRSTNEVAILTVHDIGCNHTQ-YVDFIKHSCMETLAPRCVWFNVDLPGQGIN 200
++TF + GT AI T HD+G N+ + + M+ + V +VD PG
Sbjct: 49 SVTFTVYGTPKPKRPAIFTYHDVGLNYKSCFQPLFRFGDMQEIIQNFVRVHVDAPGMEEG 108
Query: 201 DPDLPSDFTYPTM 239
P P + YP++
Sbjct: 109 APVFPLGYQYPSL 121
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,752,833
Number of Sequences: 369166
Number of extensions: 473411
Number of successful extensions: 949
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 68,354,980
effective HSP length: 51
effective length of database: 58,933,495
effective search space used: 1709071355
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)