Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_K21
(315 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q7ZW41|RPB7_BRARE DNA-directed RNA polymerase II 19 kDa ... 75 6e-14
sp|P62488|RPB7_MOUSE DNA-directed RNA polymerase II 19 kDa ... 74 8e-14
sp|P38421|RPB7_ARATH DNA-directed RNA polymerase II 19 kDa ... 65 4e-11
sp|P46279|RPB7_SOYBN DNA-directed RNA polymerase II 19 kDa ... 64 1e-10
sp|O14459|RPB7_SCHPO DNA-directed RNA polymerase II 19 kDa ... 61 7e-10
sp|P34087|RPB7_YEAST DNA-directed RNA polymerase II 19 kDa ... 45 7e-05
>sp|Q7ZW41|RPB7_BRARE DNA-directed RNA polymerase II 19 kDa polypeptide (RPB7)
Length = 172
Score = 74.7 bits (182), Expect = 6e-14
Identities = 35/89 (39%), Positives = 52/89 (58%)
Frame = +2
Query: 2 VLDAVVYNVTKIGIFAMAGAFQIFISVYAVPQNFQYDCDTVPPCYKTAXXXXXXXXXXXX 181
V+DAVV V K+G+F G FIS +++P ++D ++ PPCYKT
Sbjct: 84 VVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTVDEDVVIQQDDEI 143
Query: 182 RVRIVGLRPDACGILGVGTLAEDYLGLIN 268
R++IVG R D I +G+L +DYLGL++
Sbjct: 144 RLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172
>sp|P62488|RPB7_MOUSE DNA-directed RNA polymerase II 19 kDa polypeptide (RPB7)
sp|Q5E9B8|RPB7_BOVIN DNA-directed RNA polymerase II 19 kDa polypeptide (RPB7)
sp|P62489|RPB7_RAT DNA-directed RNA polymerase II 19 kDa polypeptide (RPB7)
sp|P62487|RPB7_HUMAN DNA-directed RNA polymerase II 19 kDa polypeptide (RPB7)
Length = 172
Score = 74.3 bits (181), Expect = 8e-14
Identities = 35/89 (39%), Positives = 52/89 (58%)
Frame = +2
Query: 2 VLDAVVYNVTKIGIFAMAGAFQIFISVYAVPQNFQYDCDTVPPCYKTAXXXXXXXXXXXX 181
V+DAVV V K+G+F G FIS +++P ++D ++ PPCYKT
Sbjct: 84 VVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEI 143
Query: 182 RVRIVGLRPDACGILGVGTLAEDYLGLIN 268
R++IVG R D I +G+L +DYLGL++
Sbjct: 144 RLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172
>sp|P38421|RPB7_ARATH DNA-directed RNA polymerase II 19 kDa polypeptide (RNA polymerase
II subunit 5)
Length = 176
Score = 65.5 bits (158), Expect = 4e-11
Identities = 34/89 (38%), Positives = 52/89 (58%)
Frame = +2
Query: 2 VLDAVVYNVTKIGIFAMAGAFQIFISVYAVPQNFQYDCDTVPPCYKTAXXXXXXXXXXXX 181
+L+AVV V K+G FA AG QIF+S + +P + ++ +P Y T+
Sbjct: 84 ILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQAGDMPN-YTTSDGSVKIQKECEV 142
Query: 182 RVRIVGLRPDACGILGVGTLAEDYLGLIN 268
R++I+G R DA I VGT+ +D+LG+IN
Sbjct: 143 RLKIIGTRVDATAIFCVGTIKDDFLGVIN 171
>sp|P46279|RPB7_SOYBN DNA-directed RNA polymerase II 19 kDa polypeptide (RNA polymerase
II subunit 5)
Length = 176
Score = 63.9 bits (154), Expect = 1e-10
Identities = 33/89 (37%), Positives = 52/89 (58%)
Frame = +2
Query: 2 VLDAVVYNVTKIGIFAMAGAFQIFISVYAVPQNFQYDCDTVPPCYKTAXXXXXXXXXXXX 181
+L+AVV V K+G FA AG QIF+S + +P + ++ +P Y T+
Sbjct: 84 ILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPN-YTTSDGSVKIQKDSEV 142
Query: 182 RVRIVGLRPDACGILGVGTLAEDYLGLIN 268
R++I+G R DA I +GT+ +D+LG+IN
Sbjct: 143 RLKIIGTRVDATEIFCIGTIKDDFLGVIN 171
>sp|O14459|RPB7_SCHPO DNA-directed RNA polymerase II 19 kDa polypeptide
Length = 172
Score = 61.2 bits (147), Expect = 7e-10
Identities = 32/88 (36%), Positives = 48/88 (54%)
Frame = +2
Query: 2 VLDAVVYNVTKIGIFAMAGAFQIFISVYAVPQNFQYDCDTVPPCYKTAXXXXXXXXXXXX 181
V+DA+V V K+G FA G +F+S + VP + ++D PP Y +
Sbjct: 87 VVDAIVTTVNKMGFFANIGPLNVFVSSHLVPPDMKFDPTANPPNY--SGEDQVIEKGSNV 144
Query: 182 RVRIVGLRPDACGILGVGTLAEDYLGLI 265
R++IVG R DA I + T+ EDYLG++
Sbjct: 145 RLKIVGTRTDATEIFAIATMKEDYLGVL 172
>sp|P34087|RPB7_YEAST DNA-directed RNA polymerase II 19 kDa polypeptide (B16)
Length = 171
Score = 44.7 bits (104), Expect = 7e-05
Identities = 23/88 (26%), Positives = 44/88 (50%)
Frame = +2
Query: 2 VLDAVVYNVTKIGIFAMAGAFQIFISVYAVPQNFQYDCDTVPPCYKTAXXXXXXXXXXXX 181
V+D V + ++ G G ++F++ + +PQ+ ++ + PP Y+++
Sbjct: 86 VVDGTVVSCSQHGFEVQVGPMKVFVTKHLMPQDLTFNAGSNPPSYQSS--EDVITIKSRI 143
Query: 182 RVRIVGLRPDACGILGVGTLAEDYLGLI 265
RV+I G I +G++ EDYLG I
Sbjct: 144 RVKIEGCISQVSSIHAIGSIKEDYLGAI 171
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,541,046
Number of Sequences: 369166
Number of extensions: 450033
Number of successful extensions: 1033
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 68,354,980
effective HSP length: 73
effective length of database: 54,869,325
effective search space used: 1700949075
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)