Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_K16
(680 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q12912|LRMP_HUMAN Lymphoid-restricted membrane protein (... 34 0.41
sp|P25302|SWI4_YEAST Regulatory protein SWI4 (Cell-cycle bo... 30 4.5
sp|Q9YJU5|VGNB_BPMV Genome polyprotein B (RNA1 polyprotein)... 30 5.9
sp|Q9QWF0|CAF1A_MOUSE Chromatin assembly factor 1 subunit A... 30 7.6
sp|Q9NZV7|ZIM2_HUMAN Zinc finger imprinted 2 29 10.0
sp|O51378|KAD_BORBU Adenylate kinase (ATP-AMP transphosphor... 29 10.0
>sp|Q12912|LRMP_HUMAN Lymphoid-restricted membrane protein (Jaw1 protein)
Length = 555
Score = 33.9 bits (76), Expect = 0.41
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +3
Query: 411 CAQRPNS--EMTNVVVTESRVRHLSESNDFVTHSIPRDIQEIHCQLNELKRLLLRPDIVN 584
CA R S EM + ESRV E ++ R + H +L ELK++LL+ +
Sbjct: 287 CAARVASRAEMLGAINQESRVSKAVEVMIQHVENLKRMYAKEHAELEELKQVLLQNERSF 346
Query: 585 DPVEKRDEC 611
+P+E D+C
Sbjct: 347 NPLEDDDDC 355
>sp|P25302|SWI4_YEAST Regulatory protein SWI4 (Cell-cycle box factor, chain SWI4) (ART1
protein)
Length = 1093
Score = 30.4 bits (67), Expect = 4.5
Identities = 33/148 (22%), Positives = 63/148 (42%), Gaps = 5/148 (3%)
Frame = +3
Query: 171 STSLSSDQRYDDVLTRNYQNNRNFKACRKLSKLKKSFSECFRSKFHHLKEVETDSE---P 341
S S +++ + D L RN ++ ++ + + + K H + ++ ++
Sbjct: 692 SNSRNNNTKADRKLARNLPQKNYYQQQQQQQQPQNNVKIPKIIKTQHPDKEDSTADVNIA 751
Query: 342 KLDSELNEEXXXXXXXXXXXXXXCAQRPNSEMTNVVVTESRVRHLSESNDFVTHSIPRDI 521
K DSE+NE + +PNS N ++ + LS N FVT S+ +DI
Sbjct: 752 KTDSEVNESQYLH-----------SNQPNSTNMNTIMED-----LSNINSFVTSSVIKDI 795
Query: 522 QEIHCQLNELKRLLL--RPDIVNDPVEK 599
+ ++ E +L R ++D EK
Sbjct: 796 KSTPSKILENSPILYRRRSQSISDEKEK 823
>sp|Q9YJU5|VGNB_BPMV Genome polyprotein B (RNA1 polyprotein) [Contains: Protease
cofactor (32 kDa protein); Putative helicase
(NTP-binding protein) (NTB) (Membrane-binding protein)
(58 kDa protein); Viral genome-linked protein (VPg);
Picornain 3C-like protease (3C-like protease) (24 kDa
protein); RNA-directed RNA polymerase (87 kDa protein)]
Length = 1850
Score = 30.0 bits (66), Expect = 5.9
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +3
Query: 441 NVVVTESRVRHLSESNDFV-THSIPRDIQEIHCQLNELKRLLLRPDIVNDP 590
N + ++R++ +E ND V S R + +HC LN+ +RPD ++DP
Sbjct: 688 NADIMKNRIK--AERNDMVYVFSAGRKDKILHCFLNKEGECTVRPDSIDDP 736
>sp|Q9QWF0|CAF1A_MOUSE Chromatin assembly factor 1 subunit A (CAF-1 subunit A) (Chromatin
assembly factor I p150 subunit) (CAF-I 150 kDa subunit)
(CAF-Ip150)
Length = 911
Score = 29.6 bits (65), Expect = 7.6
Identities = 23/87 (26%), Positives = 37/87 (42%)
Frame = +3
Query: 99 SQSHQQELVSSDDRISLFIPYHESSTSLSSDQRYDDVLTRNYQNNRNFKACRKLSKLKKS 278
S+S E DD I + SS + S + R +++ + ACR K
Sbjct: 250 SESEILESCPEDDSILSHSSTNSSSPTSSPEGPSTPPEHRGGRSSPSTPACRVAKNFVKG 309
Query: 279 FSECFRSKFHHLKEVETDSEPKLDSEL 359
+E RSK H +E + + + KL E+
Sbjct: 310 STEKGRSKLHRDREQQREEKEKLREEI 336
>sp|Q9NZV7|ZIM2_HUMAN Zinc finger imprinted 2
Length = 527
Score = 29.3 bits (64), Expect = 10.0
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
Frame = +3
Query: 114 QELVSSDDRISLFIPYHESSTSLSSDQRYDDVLTRNYQN----NRNFKACRKLSKLKKSF 281
+ELV+ +D + F P SS S + Y +V+ NY+N F +S+L++
Sbjct: 173 EELVTFEDVLVDFSPEELSSLSAAQRNLYREVMLENYRNLVSLGHQFSKPDIISRLEEEE 232
Query: 282 SECFRSKFHH--LKEVETDSEPKLDSELNEE 368
S + H + + E+ +P + N+E
Sbjct: 233 SYAMETDSRHTVICQGESHDDPLEPHQGNQE 263
>sp|O51378|KAD_BORBU Adenylate kinase (ATP-AMP transphosphorylase)
Length = 211
Score = 29.3 bits (64), Expect = 10.0
Identities = 12/51 (23%), Positives = 26/51 (50%)
Frame = +3
Query: 432 EMTNVVVTESRVRHLSESNDFVTHSIPRDIQEIHCQLNELKRLLLRPDIVN 584
++ + + E +++ + ++ DF+ PR+I CQ L + L I+N
Sbjct: 61 DLITIKIVEDKIKAIKKNKDFILDGFPRNI----CQAEALDKFLPNVKIIN 107
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,196,107
Number of Sequences: 369166
Number of extensions: 1252538
Number of successful extensions: 3142
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3142
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5782011865
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)